Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20828 and SM_b21663 overlap by 4 nucleotides SM_b21663 and SM_b21664 are separated by 99 nucleotides SM_b21664 and SM_b21665 are separated by 57 nucleotides SM_b21665 and SM_b20829 are separated by 46 nucleotides
SM_b20828: SM_b20828 - hypothetical protein, at 618,428 to 618,703
_b20828
SM_b21663: SM_b21663 - hypothetical protein, at 618,700 to 619,116
_b21663
SM_b21664: SM_b21664 - hypothetical protein, at 619,216 to 619,485
_b21664
SM_b21665: SM_b21665 - hypothetical protein, at 619,543 to 619,899
_b21665
SM_b20829: SM_b20829 - secreted calcium-binding protein, at 619,946 to 621,625
_b20829
Position (kb) 619
620 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 618.354 kb on + strand at 618.355 kb on - strand at 618.394 kb on - strand at 618.479 kb on + strand, within SM_b20828 at 618.479 kb on + strand, within SM_b20828 at 618.479 kb on + strand, within SM_b20828 at 618.491 kb on + strand, within SM_b20828 at 618.492 kb on - strand, within SM_b20828 at 618.492 kb on - strand, within SM_b20828 at 618.492 kb on - strand, within SM_b20828 at 618.492 kb on - strand, within SM_b20828 at 618.537 kb on - strand, within SM_b20828 at 618.789 kb on + strand, within SM_b21663 at 618.941 kb on + strand, within SM_b21663 at 618.954 kb on - strand, within SM_b21663 at 619.084 kb on + strand at 619.085 kb on - strand at 619.231 kb on + strand at 619.293 kb on - strand, within SM_b21664 at 619.402 kb on + strand, within SM_b21664 at 619.402 kb on + strand, within SM_b21664 at 619.402 kb on + strand, within SM_b21664 at 619.402 kb on + strand, within SM_b21664 at 619.403 kb on - strand, within SM_b21664 at 619.403 kb on - strand, within SM_b21664 at 619.435 kb on + strand, within SM_b21664 at 619.435 kb on + strand, within SM_b21664 at 619.435 kb on + strand, within SM_b21664 at 619.436 kb on - strand, within SM_b21664 at 619.436 kb on - strand, within SM_b21664 at 619.436 kb on - strand, within SM_b21664 at 619.436 kb on - strand, within SM_b21664 at 619.755 kb on + strand, within SM_b21665 at 619.756 kb on - strand, within SM_b21665 at 619.756 kb on - strand, within SM_b21665 at 619.892 kb on + strand at 619.893 kb on - strand at 619.935 kb on - strand at 619.978 kb on + strand at 619.978 kb on + strand at 619.979 kb on - strand at 620.067 kb on + strand at 620.123 kb on + strand, within SM_b20829 at 620.123 kb on + strand, within SM_b20829 at 620.124 kb on - strand, within SM_b20829 at 620.124 kb on - strand, within SM_b20829 at 620.124 kb on - strand, within SM_b20829 at 620.185 kb on + strand, within SM_b20829 at 620.186 kb on - strand, within SM_b20829 at 620.245 kb on + strand, within SM_b20829 at 620.246 kb on - strand, within SM_b20829 at 620.248 kb on + strand, within SM_b20829 at 620.288 kb on - strand, within SM_b20829 at 620.312 kb on + strand, within SM_b20829 at 620.312 kb on + strand, within SM_b20829 at 620.313 kb on - strand, within SM_b20829 at 620.421 kb on - strand, within SM_b20829 at 620.434 kb on + strand, within SM_b20829 at 620.435 kb on - strand, within SM_b20829 at 620.440 kb on + strand, within SM_b20829 at 620.441 kb on - strand, within SM_b20829 at 620.441 kb on - strand, within SM_b20829 at 620.473 kb on + strand, within SM_b20829 at 620.473 kb on + strand, within SM_b20829 at 620.473 kb on + strand at 620.474 kb on - strand, within SM_b20829 at 620.474 kb on - strand, within SM_b20829
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 618,354 + -0.7 618,355 - +0.8 618,394 - -0.0 618,479 + SM_b20828 0.18 -0.9 618,479 + SM_b20828 0.18 +1.0 618,479 + SM_b20828 0.18 -0.0 618,491 + SM_b20828 0.23 -1.7 618,492 - SM_b20828 0.23 -1.2 618,492 - SM_b20828 0.23 +0.0 618,492 - SM_b20828 0.23 -1.6 618,492 - SM_b20828 0.23 +1.7 618,537 - SM_b20828 0.39 -1.4 618,789 + SM_b21663 0.21 +0.6 618,941 + SM_b21663 0.58 -1.0 618,954 - SM_b21663 0.61 +1.4 619,084 + +2.1 619,085 - -2.2 619,231 + -1.1 619,293 - SM_b21664 0.29 +0.5 619,402 + SM_b21664 0.69 +2.3 619,402 + SM_b21664 0.69 -0.8 619,402 + SM_b21664 0.69 -0.2 619,402 + SM_b21664 0.69 +0.3 619,403 - SM_b21664 0.69 +3.5 619,403 - SM_b21664 0.69 -0.9 619,435 + SM_b21664 0.81 -0.0 619,435 + SM_b21664 0.81 -0.7 619,435 + SM_b21664 0.81 +0.8 619,436 - SM_b21664 0.81 +0.7 619,436 - SM_b21664 0.81 +0.3 619,436 - SM_b21664 0.81 -1.5 619,436 - SM_b21664 0.81 +1.2 619,755 + SM_b21665 0.59 -0.4 619,756 - SM_b21665 0.60 -0.2 619,756 - SM_b21665 0.60 -0.1 619,892 + +0.5 619,893 - -1.1 619,935 - +0.1 619,978 + -0.2 619,978 + -2.2 619,979 - +0.5 620,067 + -0.4 620,123 + SM_b20829 0.11 -2.6 620,123 + SM_b20829 0.11 -0.9 620,124 - SM_b20829 0.11 -2.4 620,124 - SM_b20829 0.11 -2.8 620,124 - SM_b20829 0.11 +2.0 620,185 + SM_b20829 0.14 +1.3 620,186 - SM_b20829 0.14 -0.1 620,245 + SM_b20829 0.18 -1.8 620,246 - SM_b20829 0.18 +2.5 620,248 + SM_b20829 0.18 +0.4 620,288 - SM_b20829 0.20 -1.2 620,312 + SM_b20829 0.22 -2.5 620,312 + SM_b20829 0.22 +0.9 620,313 - SM_b20829 0.22 +0.4 620,421 - SM_b20829 0.28 -3.6 620,434 + SM_b20829 0.29 +1.2 620,435 - SM_b20829 0.29 -1.4 620,440 + SM_b20829 0.29 +0.8 620,441 - SM_b20829 0.29 +1.4 620,441 - SM_b20829 0.29 -3.0 620,473 + SM_b20829 0.31 +0.9 620,473 + SM_b20829 0.31 +0.1 620,473 + -0.2 620,474 - SM_b20829 0.31 -0.3 620,474 - SM_b20829 0.31 +0.6
Or see this region's nucleotide sequence