Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21523

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21521 and SM_b21522 are separated by 392 nucleotidesSM_b21522 and SM_b21523 overlap by 4 nucleotidesSM_b21523 and SM_b21524 are separated by 97 nucleotides SM_b21521: SM_b21521 - hypothetical protein, at 1,445,257 to 1,445,715 _b21521 SM_b21522: SM_b21522 - cell division topological specificity factor MinE, at 1,446,108 to 1,446,371 _b21522 SM_b21523: SM_b21523 - cell division inhibitor protein, at 1,446,368 to 1,447,183 _b21523 SM_b21524: SM_b21524 - septum formation inhibitor, at 1,447,281 to 1,448,030 _b21524 Position (kb) 1446 1447 1448Strain fitness (log2 ratio) -2 -1 0 1at 1445.642 kb on + strand, within SM_b21521at 1445.737 kb on + strandat 1446.390 kb on - strandat 1446.471 kb on + strand, within SM_b21523at 1446.642 kb on + strand, within SM_b21523at 1446.643 kb on - strand, within SM_b21523at 1447.011 kb on + strand, within SM_b21523at 1447.012 kb on - strand, within SM_b21523at 1447.166 kb on + strandat 1447.167 kb on - strandat 1447.172 kb on + strandat 1447.253 kb on - strandat 1447.376 kb on - strand, within SM_b21524at 1447.484 kb on + strand, within SM_b21524at 1447.485 kb on - strand, within SM_b21524at 1448.041 kb on + strandat 1448.041 kb on + strandat 1448.058 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,445,642 + SM_b21521 0.84 +1.1
1,445,737 + -1.2
1,446,390 - -0.2
1,446,471 + SM_b21523 0.13 -1.9
1,446,642 + SM_b21523 0.34 +1.3
1,446,643 - SM_b21523 0.34 +1.7
1,447,011 + SM_b21523 0.79 -1.0
1,447,012 - SM_b21523 0.79 +1.6
1,447,166 + -2.2
1,447,167 - +0.4
1,447,172 + -0.1
1,447,253 - -0.3
1,447,376 - SM_b21524 0.13 -0.4
1,447,484 + SM_b21524 0.27 +0.7
1,447,485 - SM_b21524 0.27 -1.7
1,448,041 + +1.6
1,448,041 + +0.4
1,448,058 + +0.3

Or see this region's nucleotide sequence