Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21337 and SM_b21338 are separated by 3 nucleotides SM_b21338 and SM_b21339 are separated by 1 nucleotides SM_b21339 and SM_b21340 overlap by 28 nucleotides
SM_b21337: SM_b21337 - iron-sulfur-binding protein, at 1,003,886 to 1,004,548
_b21337
SM_b21338: SM_b21338 - molybdopterin-binding protein, at 1,004,552 to 1,005,457
_b21338
SM_b21339: SM_b21339 - N-terminal part of the catalytic subunit of an oxidoreductase like aldehyde oxidase or xanthine dehydrogenase, at 1,005,459 to 1,005,791
_b21339
SM_b21340: SM_b21340 - hypothetical protein, at 1,005,764 to 1,006,831
_b21340
Position (kb) 1005
1006 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1004.483 kb on - strand at 1004.502 kb on - strand at 1004.567 kb on + strand at 1004.777 kb on - strand at 1004.777 kb on - strand, within SM_b21338 at 1004.860 kb on - strand, within SM_b21338 at 1004.860 kb on - strand, within SM_b21338 at 1004.872 kb on + strand, within SM_b21338 at 1004.919 kb on - strand, within SM_b21338 at 1005.131 kb on + strand, within SM_b21338 at 1005.200 kb on - strand, within SM_b21338 at 1005.261 kb on - strand, within SM_b21338 at 1005.585 kb on - strand, within SM_b21339 at 1005.607 kb on + strand, within SM_b21339 at 1005.659 kb on + strand, within SM_b21339 at 1005.660 kb on - strand, within SM_b21339 at 1005.663 kb on + strand, within SM_b21339 at 1005.663 kb on + strand, within SM_b21339 at 1005.663 kb on + strand, within SM_b21339 at 1005.664 kb on - strand, within SM_b21339 at 1005.664 kb on - strand, within SM_b21339 at 1005.664 kb on - strand, within SM_b21339 at 1005.664 kb on - strand, within SM_b21339 at 1005.669 kb on + strand, within SM_b21339 at 1005.669 kb on + strand, within SM_b21339 at 1005.670 kb on - strand, within SM_b21339 at 1005.782 kb on - strand at 1005.782 kb on - strand at 1005.782 kb on - strand at 1006.002 kb on - strand, within SM_b21340 at 1006.002 kb on - strand, within SM_b21340 at 1006.002 kb on - strand, within SM_b21340 at 1006.002 kb on - strand, within SM_b21340 at 1006.002 kb on - strand, within SM_b21340 at 1006.291 kb on + strand, within SM_b21340 at 1006.362 kb on - strand, within SM_b21340 at 1006.362 kb on - strand, within SM_b21340 at 1006.474 kb on + strand, within SM_b21340 at 1006.475 kb on - strand, within SM_b21340 at 1006.572 kb on - strand, within SM_b21340 at 1006.621 kb on + strand, within SM_b21340 at 1006.621 kb on + strand, within SM_b21340 at 1006.622 kb on - strand, within SM_b21340 at 1006.622 kb on - strand, within SM_b21340 at 1006.748 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 1,004,483 - -3.0 1,004,502 - +0.4 1,004,567 + +1.5 1,004,777 - +1.3 1,004,777 - SM_b21338 0.25 -1.1 1,004,860 - SM_b21338 0.34 +0.1 1,004,860 - SM_b21338 0.34 +0.4 1,004,872 + SM_b21338 0.35 -0.5 1,004,919 - SM_b21338 0.41 +2.5 1,005,131 + SM_b21338 0.64 -2.0 1,005,200 - SM_b21338 0.72 -1.1 1,005,261 - SM_b21338 0.78 -0.2 1,005,585 - SM_b21339 0.38 +0.5 1,005,607 + SM_b21339 0.44 +0.3 1,005,659 + SM_b21339 0.60 -1.1 1,005,660 - SM_b21339 0.60 +0.5 1,005,663 + SM_b21339 0.61 -0.3 1,005,663 + SM_b21339 0.61 -0.3 1,005,663 + SM_b21339 0.61 +0.7 1,005,664 - SM_b21339 0.62 -0.1 1,005,664 - SM_b21339 0.62 -1.0 1,005,664 - SM_b21339 0.62 -1.3 1,005,664 - SM_b21339 0.62 -0.0 1,005,669 + SM_b21339 0.63 +0.9 1,005,669 + SM_b21339 0.63 +0.2 1,005,670 - SM_b21339 0.63 -1.0 1,005,782 - -1.5 1,005,782 - -2.6 1,005,782 - -0.3 1,006,002 - SM_b21340 0.22 -1.8 1,006,002 - SM_b21340 0.22 -0.3 1,006,002 - SM_b21340 0.22 +0.1 1,006,002 - SM_b21340 0.22 +1.3 1,006,002 - SM_b21340 0.22 -0.1 1,006,291 + SM_b21340 0.49 -1.9 1,006,362 - SM_b21340 0.56 -2.9 1,006,362 - SM_b21340 0.56 -0.9 1,006,474 + SM_b21340 0.66 +0.1 1,006,475 - SM_b21340 0.67 +1.9 1,006,572 - SM_b21340 0.76 +1.1 1,006,621 + SM_b21340 0.80 -0.6 1,006,621 + SM_b21340 0.80 -0.9 1,006,622 - SM_b21340 0.80 -2.4 1,006,622 - SM_b21340 0.80 +3.9 1,006,748 + -0.2
Or see this region's nucleotide sequence