Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21279 and SM_b21280 are separated by 151 nucleotides SM_b21280 and SM_b21281 are separated by 199 nucleotides
SM_b21279: SM_b21279 - amidohydrolase, at 853,494 to 854,663
_b21279
SM_b21280: SM_b21280 - phosphoribosyltransferase, at 854,815 to 855,525
_b21280
SM_b21281: SM_b21281 - xanthine uracil permease, at 855,725 to 857,098
_b21281
Position (kb) 854
855
856 Strain fitness (log2 ratio) -2
-1
0
1
2 at 853.878 kb on - strand, within SM_b21279 at 853.880 kb on - strand, within SM_b21279 at 854.189 kb on - strand, within SM_b21279 at 854.345 kb on + strand, within SM_b21279 at 854.814 kb on + strand at 854.815 kb on - strand at 854.848 kb on + strand at 855.146 kb on - strand, within SM_b21280 at 855.210 kb on + strand, within SM_b21280 at 855.211 kb on - strand, within SM_b21280 at 855.211 kb on - strand, within SM_b21280 at 855.242 kb on - strand, within SM_b21280 at 855.452 kb on + strand, within SM_b21280 at 855.453 kb on - strand, within SM_b21280 at 855.453 kb on - strand, within SM_b21280 at 855.523 kb on + strand at 855.523 kb on + strand at 855.524 kb on - strand at 855.524 kb on - strand at 855.687 kb on + strand at 855.687 kb on + strand at 855.687 kb on + strand at 855.687 kb on + strand at 855.688 kb on - strand at 855.688 kb on - strand at 855.688 kb on - strand at 855.688 kb on - strand at 855.688 kb on - strand at 855.829 kb on + strand at 855.830 kb on - strand at 855.886 kb on + strand, within SM_b21281 at 855.887 kb on - strand, within SM_b21281 at 855.887 kb on - strand, within SM_b21281 at 855.887 kb on - strand, within SM_b21281 at 855.896 kb on + strand, within SM_b21281 at 855.896 kb on + strand, within SM_b21281 at 855.896 kb on + strand, within SM_b21281 at 855.896 kb on + strand, within SM_b21281 at 855.897 kb on - strand, within SM_b21281
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 853,878 - SM_b21279 0.33 -2.3 853,880 - SM_b21279 0.33 -0.8 854,189 - SM_b21279 0.59 +1.4 854,345 + SM_b21279 0.73 +0.1 854,814 + +0.1 854,815 - +0.1 854,848 + +0.9 855,146 - SM_b21280 0.47 +2.3 855,210 + SM_b21280 0.56 +1.6 855,211 - SM_b21280 0.56 -0.9 855,211 - SM_b21280 0.56 +1.5 855,242 - SM_b21280 0.60 +1.6 855,452 + SM_b21280 0.90 -0.0 855,453 - SM_b21280 0.90 -1.1 855,453 - SM_b21280 0.90 +1.7 855,523 + +0.5 855,523 + +0.6 855,524 - +0.3 855,524 - -1.7 855,687 + -1.8 855,687 + +0.2 855,687 + -2.0 855,687 + -0.1 855,688 - +0.3 855,688 - -0.4 855,688 - -0.9 855,688 - +0.2 855,688 - -0.2 855,829 + +2.0 855,830 - +0.9 855,886 + SM_b21281 0.12 -1.5 855,887 - SM_b21281 0.12 -1.2 855,887 - SM_b21281 0.12 -1.3 855,887 - SM_b21281 0.12 -2.7 855,896 + SM_b21281 0.12 -0.9 855,896 + SM_b21281 0.12 +0.3 855,896 + SM_b21281 0.12 +0.8 855,896 + SM_b21281 0.12 -1.7 855,897 - SM_b21281 0.13 -0.4
Or see this region's nucleotide sequence