Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21269 and SM_b21270 are separated by 96 nucleotides SM_b21270 and SM_b21271 are separated by 83 nucleotides SM_b21271 and SM_b21272 are separated by 147 nucleotides
SM_b21269: SM_b21269 - ABC transporter ATPase, at 842,345 to 844,435
_b21269
SM_b21270: SM_b21270 - transcriptional regulator, at 844,532 to 844,996
_b21270
SM_b21271: SM_b21271 - nucleotide-binding protein, at 845,080 to 845,829
_b21271
SM_b21272: SM_b21272 - LacI family transcriptional regulator, at 845,977 to 847,047
_b21272
Position (kb) 845
846 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 844.196 kb on + strand, within SM_b21269 at 844.299 kb on + strand at 844.416 kb on - strand at 844.416 kb on - strand at 844.416 kb on - strand at 844.438 kb on + strand at 844.438 kb on + strand at 844.438 kb on + strand at 844.438 kb on + strand at 844.439 kb on - strand at 844.439 kb on - strand at 844.439 kb on - strand at 844.439 kb on - strand at 844.439 kb on - strand at 844.441 kb on + strand at 844.441 kb on + strand at 844.442 kb on - strand at 844.442 kb on - strand at 844.442 kb on - strand at 844.463 kb on + strand at 844.463 kb on + strand at 844.463 kb on + strand at 844.464 kb on - strand at 844.464 kb on - strand at 844.464 kb on - strand at 844.532 kb on - strand at 844.539 kb on + strand at 844.638 kb on - strand, within SM_b21270 at 844.688 kb on + strand, within SM_b21270 at 844.688 kb on + strand, within SM_b21270 at 844.689 kb on - strand, within SM_b21270 at 845.068 kb on + strand at 845.069 kb on - strand at 845.096 kb on - strand at 845.096 kb on - strand at 845.113 kb on + strand at 845.224 kb on + strand, within SM_b21271 at 845.225 kb on - strand, within SM_b21271 at 845.225 kb on - strand, within SM_b21271 at 845.227 kb on - strand, within SM_b21271 at 845.566 kb on + strand, within SM_b21271 at 845.566 kb on + strand, within SM_b21271 at 845.567 kb on - strand, within SM_b21271 at 845.715 kb on - strand, within SM_b21271 at 845.715 kb on - strand, within SM_b21271 at 845.882 kb on + strand at 845.883 kb on - strand at 845.883 kb on - strand at 845.883 kb on - strand at 845.883 kb on - strand at 845.885 kb on + strand at 845.885 kb on + strand at 845.927 kb on + strand at 845.928 kb on - strand at 845.970 kb on + strand at 845.970 kb on + strand at 845.971 kb on - strand at 846.008 kb on + strand at 846.008 kb on + strand at 846.008 kb on + strand at 846.009 kb on - strand at 846.009 kb on - strand at 846.532 kb on - strand, within SM_b21272 at 846.532 kb on - strand, within SM_b21272
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 844,196 + SM_b21269 0.89 +0.7 844,299 + -1.0 844,416 - -1.6 844,416 - -3.0 844,416 - +0.9 844,438 + +0.4 844,438 + +0.7 844,438 + +0.3 844,438 + +0.5 844,439 - +0.3 844,439 - -0.6 844,439 - -0.8 844,439 - +0.8 844,439 - -3.6 844,441 + -0.0 844,441 + +0.2 844,442 - -0.5 844,442 - +0.0 844,442 - -0.2 844,463 + -0.5 844,463 + +0.4 844,463 + -0.2 844,464 - -0.5 844,464 - -0.1 844,464 - +0.2 844,532 - -0.6 844,539 + -0.3 844,638 - SM_b21270 0.23 +0.6 844,688 + SM_b21270 0.34 +1.0 844,688 + SM_b21270 0.34 -0.5 844,689 - SM_b21270 0.34 -3.5 845,068 + -0.6 845,069 - +1.0 845,096 - -0.8 845,096 - -0.1 845,113 + +1.1 845,224 + SM_b21271 0.19 +0.1 845,225 - SM_b21271 0.19 -1.0 845,225 - SM_b21271 0.19 -1.3 845,227 - SM_b21271 0.20 -0.0 845,566 + SM_b21271 0.65 -1.3 845,566 + SM_b21271 0.65 +0.0 845,567 - SM_b21271 0.65 -0.8 845,715 - SM_b21271 0.85 -0.0 845,715 - SM_b21271 0.85 -1.2 845,882 + -0.7 845,883 - +0.6 845,883 - -2.2 845,883 - -1.7 845,883 - -0.3 845,885 + -0.1 845,885 + +0.3 845,927 + -0.1 845,928 - +0.9 845,970 + +0.2 845,970 + -0.4 845,971 - +0.3 846,008 + +0.9 846,008 + +1.0 846,008 + -0.9 846,009 - +0.4 846,009 - +0.0 846,532 - SM_b21272 0.52 -0.8 846,532 - SM_b21272 0.52 +0.4
Or see this region's nucleotide sequence