Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21244 and SM_b21245 are separated by 489 nucleotides SM_b21245 and SM_b21246 are separated by 62 nucleotides SM_b21246 and SM_b21247 are separated by 40 nucleotides
SM_b21244: SM_b21244 - membrane protein, polysaccharide transporter, at 811,842 to 813,131
_b21244
SM_b21245: SM_b21245 - OMA family outer membrane protein, at 813,621 to 814,871
_b21245
SM_b21246: SM_b21246 - UDP-phosphate galactose phosphotransferase, at 814,934 to 815,626
_b21246
SM_b21247: SM_b21247 - hypothetical protein, at 815,667 to 816,353
_b21247
Position (kb) 813
814
815 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 812.671 kb on + strand, within SM_b21244 at 812.672 kb on - strand, within SM_b21244 at 812.856 kb on - strand, within SM_b21244 at 812.968 kb on - strand, within SM_b21244 at 812.968 kb on - strand, within SM_b21244 at 812.992 kb on + strand, within SM_b21244 at 812.993 kb on - strand, within SM_b21244 at 813.003 kb on + strand at 813.004 kb on - strand at 813.004 kb on - strand at 813.212 kb on - strand at 813.212 kb on - strand at 813.219 kb on - strand at 813.226 kb on - strand at 813.241 kb on + strand at 813.241 kb on + strand at 813.271 kb on + strand at 813.311 kb on - strand at 813.318 kb on + strand at 813.318 kb on + strand at 813.319 kb on - strand at 813.319 kb on - strand at 813.530 kb on - strand at 813.562 kb on + strand at 813.564 kb on + strand at 813.598 kb on - strand at 813.598 kb on - strand at 813.645 kb on - strand at 813.645 kb on - strand at 813.645 kb on - strand at 813.645 kb on - strand at 813.719 kb on + strand at 813.719 kb on + strand at 813.720 kb on - strand at 813.720 kb on - strand at 813.725 kb on + strand at 813.726 kb on - strand at 813.899 kb on + strand, within SM_b21245 at 813.900 kb on - strand, within SM_b21245 at 814.023 kb on + strand, within SM_b21245 at 814.023 kb on + strand, within SM_b21245 at 814.024 kb on - strand, within SM_b21245 at 814.170 kb on + strand, within SM_b21245 at 814.171 kb on - strand, within SM_b21245 at 814.171 kb on - strand, within SM_b21245 at 814.248 kb on + strand, within SM_b21245 at 814.248 kb on + strand, within SM_b21245 at 814.249 kb on - strand, within SM_b21245 at 814.249 kb on - strand, within SM_b21245 at 814.249 kb on - strand, within SM_b21245 at 814.279 kb on + strand, within SM_b21245 at 814.280 kb on - strand, within SM_b21245 at 814.354 kb on + strand, within SM_b21245 at 814.381 kb on + strand, within SM_b21245 at 814.382 kb on - strand, within SM_b21245 at 814.446 kb on - strand, within SM_b21245 at 814.627 kb on + strand, within SM_b21245 at 814.627 kb on + strand, within SM_b21245 at 814.628 kb on - strand, within SM_b21245 at 814.702 kb on + strand, within SM_b21245 at 814.703 kb on - strand, within SM_b21245 at 814.703 kb on - strand at 814.709 kb on + strand, within SM_b21245 at 814.709 kb on + strand, within SM_b21245 at 814.710 kb on - strand, within SM_b21245 at 814.756 kb on - strand at 814.761 kb on + strand at 814.761 kb on + strand at 814.761 kb on + strand at 814.762 kb on - strand at 814.762 kb on - strand at 814.762 kb on - strand at 814.804 kb on + strand at 814.804 kb on + strand at 814.869 kb on + strand at 814.869 kb on + strand at 814.869 kb on + strand at 814.870 kb on - strand at 814.870 kb on - strand at 814.904 kb on + strand at 814.904 kb on + strand at 814.905 kb on - strand at 814.928 kb on - strand at 814.928 kb on - strand at 814.945 kb on + strand at 814.945 kb on + strand at 814.995 kb on - strand at 815.149 kb on + strand, within SM_b21246 at 815.310 kb on + strand, within SM_b21246 at 815.310 kb on + strand, within SM_b21246 at 815.311 kb on - strand, within SM_b21246 at 815.311 kb on - strand, within SM_b21246 at 815.358 kb on + strand, within SM_b21246 at 815.409 kb on + strand, within SM_b21246 at 815.473 kb on + strand, within SM_b21246 at 815.473 kb on + strand, within SM_b21246 at 815.473 kb on + strand, within SM_b21246 at 815.474 kb on - strand, within SM_b21246 at 815.474 kb on - strand, within SM_b21246 at 815.474 kb on - strand, within SM_b21246 at 815.683 kb on + strand at 815.684 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 812,671 + SM_b21244 0.64 +2.0 812,672 - SM_b21244 0.64 -2.3 812,856 - SM_b21244 0.79 +2.9 812,968 - SM_b21244 0.87 -0.1 812,968 - SM_b21244 0.87 -0.2 812,992 + SM_b21244 0.89 -0.4 812,993 - SM_b21244 0.89 -1.0 813,003 + -1.1 813,004 - +0.7 813,004 - -0.0 813,212 - +0.4 813,212 - -1.8 813,219 - -0.5 813,226 - +1.3 813,241 + +0.8 813,241 + -1.2 813,271 + -2.0 813,311 - +0.1 813,318 + +0.9 813,318 + -1.2 813,319 - -0.2 813,319 - -0.8 813,530 - +0.4 813,562 + -0.9 813,564 + -1.3 813,598 - -0.9 813,598 - +0.4 813,645 - +0.8 813,645 - +1.8 813,645 - -1.9 813,645 - -0.3 813,719 + -0.3 813,719 + -0.1 813,720 - -0.6 813,720 - -0.1 813,725 + -0.6 813,726 - -1.0 813,899 + SM_b21245 0.22 +0.8 813,900 - SM_b21245 0.22 +1.0 814,023 + SM_b21245 0.32 +0.2 814,023 + SM_b21245 0.32 +1.1 814,024 - SM_b21245 0.32 +2.2 814,170 + SM_b21245 0.44 +0.5 814,171 - SM_b21245 0.44 -0.5 814,171 - SM_b21245 0.44 +1.6 814,248 + SM_b21245 0.50 -0.7 814,248 + SM_b21245 0.50 +1.0 814,249 - SM_b21245 0.50 -1.6 814,249 - SM_b21245 0.50 +2.3 814,249 - SM_b21245 0.50 -0.1 814,279 + SM_b21245 0.53 +0.2 814,280 - SM_b21245 0.53 +1.1 814,354 + SM_b21245 0.59 -2.3 814,381 + SM_b21245 0.61 +0.5 814,382 - SM_b21245 0.61 +1.1 814,446 - SM_b21245 0.66 +0.4 814,627 + SM_b21245 0.80 -0.0 814,627 + SM_b21245 0.80 +0.4 814,628 - SM_b21245 0.80 -0.3 814,702 + SM_b21245 0.86 +0.9 814,703 - SM_b21245 0.86 -0.5 814,703 - +2.0 814,709 + SM_b21245 0.87 -1.1 814,709 + SM_b21245 0.87 -1.0 814,710 - SM_b21245 0.87 -0.4 814,756 - +0.8 814,761 + -1.0 814,761 + +0.3 814,761 + -0.3 814,762 - -1.2 814,762 - +0.5 814,762 - -1.7 814,804 + +1.2 814,804 + +0.4 814,869 + +0.5 814,869 + +0.3 814,869 + +0.7 814,870 - +0.3 814,870 - +0.0 814,904 + +0.6 814,904 + +0.2 814,905 - -1.8 814,928 - +0.9 814,928 - +2.2 814,945 + -1.5 814,945 + +0.0 814,995 - -0.1 815,149 + SM_b21246 0.31 +0.8 815,310 + SM_b21246 0.54 -1.3 815,310 + SM_b21246 0.54 +0.2 815,311 - SM_b21246 0.54 -0.7 815,311 - SM_b21246 0.54 -3.5 815,358 + SM_b21246 0.61 -1.0 815,409 + SM_b21246 0.69 +2.3 815,473 + SM_b21246 0.78 -3.2 815,473 + SM_b21246 0.78 -0.1 815,473 + SM_b21246 0.78 +1.2 815,474 - SM_b21246 0.78 +0.1 815,474 - SM_b21246 0.78 -1.2 815,474 - SM_b21246 0.78 +0.8 815,683 + +0.1 815,684 - +0.1
Or see this region's nucleotide sequence