Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21205 and SM_b21206 overlap by 4 nucleotides SM_b21206 and SM_b21207 overlap by 1 nucleotides
SM_b21205: SM_b21205 - ABC transporter permease, at 957,069 to 958,223
_b21205
SM_b21206: SM_b21206 - ABC transporter ATP-binding protein, at 958,220 to 959,968
_b21206
SM_b21207: SM_b21207 - hypothetical protein, at 959,968 to 960,972
_b21207
Position (kb) 958
959
960 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 957.226 kb on + strand, within SM_b21205 at 957.226 kb on + strand, within SM_b21205 at 957.227 kb on - strand, within SM_b21205 at 957.227 kb on - strand, within SM_b21205 at 957.227 kb on - strand, within SM_b21205 at 957.227 kb on - strand, within SM_b21205 at 957.409 kb on + strand, within SM_b21205 at 957.410 kb on - strand, within SM_b21205 at 957.502 kb on + strand, within SM_b21205 at 957.778 kb on + strand, within SM_b21205 at 957.779 kb on - strand, within SM_b21205 at 958.192 kb on + strand at 958.193 kb on - strand at 958.357 kb on - strand at 958.359 kb on - strand at 958.447 kb on + strand, within SM_b21206 at 958.666 kb on - strand, within SM_b21206 at 958.666 kb on - strand, within SM_b21206 at 958.713 kb on + strand, within SM_b21206 at 958.713 kb on + strand, within SM_b21206 at 958.714 kb on - strand, within SM_b21206 at 958.737 kb on + strand, within SM_b21206 at 958.737 kb on + strand, within SM_b21206 at 958.737 kb on + strand, within SM_b21206 at 958.737 kb on + strand, within SM_b21206 at 958.738 kb on - strand, within SM_b21206 at 958.738 kb on - strand, within SM_b21206 at 958.742 kb on + strand, within SM_b21206 at 958.900 kb on + strand, within SM_b21206 at 959.047 kb on + strand, within SM_b21206 at 959.358 kb on + strand, within SM_b21206 at 959.695 kb on + strand, within SM_b21206 at 959.695 kb on + strand, within SM_b21206 at 959.695 kb on + strand, within SM_b21206 at 959.696 kb on - strand, within SM_b21206 at 959.696 kb on - strand, within SM_b21206 at 959.697 kb on + strand, within SM_b21206 at 959.698 kb on - strand, within SM_b21206 at 959.756 kb on + strand, within SM_b21206 at 959.756 kb on + strand, within SM_b21206 at 959.756 kb on + strand, within SM_b21206 at 959.757 kb on - strand, within SM_b21206 at 959.757 kb on - strand, within SM_b21206 at 960.149 kb on + strand, within SM_b21207 at 960.149 kb on + strand, within SM_b21207 at 960.149 kb on + strand, within SM_b21207 at 960.150 kb on - strand, within SM_b21207 at 960.150 kb on - strand, within SM_b21207 at 960.150 kb on - strand, within SM_b21207 at 960.150 kb on - strand, within SM_b21207 at 960.153 kb on + strand, within SM_b21207 at 960.154 kb on - strand, within SM_b21207 at 960.154 kb on - strand, within SM_b21207 at 960.231 kb on - strand, within SM_b21207 at 960.231 kb on - strand, within SM_b21207 at 960.231 kb on - strand, within SM_b21207 at 960.270 kb on - strand, within SM_b21207 at 960.270 kb on - strand, within SM_b21207 at 960.270 kb on - strand, within SM_b21207 at 960.276 kb on + strand, within SM_b21207 at 960.424 kb on + strand, within SM_b21207 at 960.425 kb on - strand, within SM_b21207 at 960.543 kb on + strand, within SM_b21207 at 960.544 kb on - strand, within SM_b21207 at 960.604 kb on + strand, within SM_b21207 at 960.605 kb on - strand, within SM_b21207
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 957,226 + SM_b21205 0.14 +0.0 957,226 + SM_b21205 0.14 +1.0 957,227 - SM_b21205 0.14 -0.4 957,227 - SM_b21205 0.14 +0.0 957,227 - SM_b21205 0.14 -3.2 957,227 - SM_b21205 0.14 +2.2 957,409 + SM_b21205 0.29 +1.8 957,410 - SM_b21205 0.30 +0.4 957,502 + SM_b21205 0.37 -1.3 957,778 + SM_b21205 0.61 -0.9 957,779 - SM_b21205 0.61 +0.3 958,192 + -1.2 958,193 - +0.9 958,357 - +0.2 958,359 - +1.0 958,447 + SM_b21206 0.13 +0.1 958,666 - SM_b21206 0.26 +0.5 958,666 - SM_b21206 0.26 +0.5 958,713 + SM_b21206 0.28 +0.8 958,713 + SM_b21206 0.28 +0.7 958,714 - SM_b21206 0.28 -2.5 958,737 + SM_b21206 0.30 +1.6 958,737 + SM_b21206 0.30 -2.3 958,737 + SM_b21206 0.30 -0.8 958,737 + SM_b21206 0.30 +1.0 958,738 - SM_b21206 0.30 +0.5 958,738 - SM_b21206 0.30 +1.3 958,742 + SM_b21206 0.30 -2.5 958,900 + SM_b21206 0.39 +0.5 959,047 + SM_b21206 0.47 -0.7 959,358 + SM_b21206 0.65 -1.2 959,695 + SM_b21206 0.84 -0.8 959,695 + SM_b21206 0.84 +0.4 959,695 + SM_b21206 0.84 +0.5 959,696 - SM_b21206 0.84 -1.8 959,696 - SM_b21206 0.84 +0.4 959,697 + SM_b21206 0.84 +0.4 959,698 - SM_b21206 0.85 -1.3 959,756 + SM_b21206 0.88 -3.2 959,756 + SM_b21206 0.88 +1.2 959,756 + SM_b21206 0.88 +0.4 959,757 - SM_b21206 0.88 +1.1 959,757 - SM_b21206 0.88 -1.2 960,149 + SM_b21207 0.18 -0.8 960,149 + SM_b21207 0.18 +2.0 960,149 + SM_b21207 0.18 -0.1 960,150 - SM_b21207 0.18 -0.3 960,150 - SM_b21207 0.18 +0.2 960,150 - SM_b21207 0.18 +0.1 960,150 - SM_b21207 0.18 -0.6 960,153 + SM_b21207 0.18 +1.9 960,154 - SM_b21207 0.19 +0.8 960,154 - SM_b21207 0.19 -0.5 960,231 - SM_b21207 0.26 -1.4 960,231 - SM_b21207 0.26 +1.7 960,231 - SM_b21207 0.26 +0.1 960,270 - SM_b21207 0.30 +0.3 960,270 - SM_b21207 0.30 -0.8 960,270 - SM_b21207 0.30 -0.4 960,276 + SM_b21207 0.31 +0.4 960,424 + SM_b21207 0.45 -0.1 960,425 - SM_b21207 0.45 +0.6 960,543 + SM_b21207 0.57 +0.4 960,544 - SM_b21207 0.57 -0.0 960,604 + SM_b21207 0.63 -0.0 960,605 - SM_b21207 0.63 -0.0
Or see this region's nucleotide sequence