Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21103

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21102 and SM_b21103 are separated by 167 nucleotidesSM_b21103 and SM_b21104 are separated by 69 nucleotidesSM_b21104 and SM_b21105 overlap by 1 nucleotides SM_b21102: SM_b21102 - transcriptional regulator, at 744,023 to 744,805 _b21102 SM_b21103: SM_b21103 - ABC transporter for L-Fucose, periplasmic substrate-binding protein (from data), at 744,973 to 746,292 _b21103 SM_b21104: SM_b21104 - ABC transporter for L-Fucose, permease component 1 (from data), at 746,362 to 747,258 _b21104 SM_b21105: SM_b21105 - ABC transporter for L-Fucose, permease component 2 (from data), at 747,258 to 748,124 _b21105 Position (kb) 744 745 746 747Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 744.136 kb on + strand, within SM_b21102at 744.136 kb on + strand, within SM_b21102at 744.136 kb on + strand, within SM_b21102at 744.136 kb on + strand, within SM_b21102at 744.136 kb on + strand, within SM_b21102at 744.137 kb on - strand, within SM_b21102at 744.137 kb on - strand, within SM_b21102at 744.137 kb on - strand, within SM_b21102at 744.138 kb on + strand, within SM_b21102at 744.138 kb on + strand, within SM_b21102at 744.138 kb on + strand, within SM_b21102at 744.138 kb on + strand, within SM_b21102at 744.138 kb on + strand, within SM_b21102at 744.138 kb on + strand, within SM_b21102at 744.201 kb on + strand, within SM_b21102at 744.202 kb on - strand, within SM_b21102at 744.202 kb on - strand, within SM_b21102at 744.202 kb on - strand, within SM_b21102at 744.238 kb on - strand, within SM_b21102at 744.270 kb on + strand, within SM_b21102at 744.270 kb on + strand, within SM_b21102at 744.271 kb on - strand, within SM_b21102at 744.395 kb on - strand, within SM_b21102at 744.603 kb on + strand, within SM_b21102at 744.630 kb on + strand, within SM_b21102at 744.630 kb on + strand, within SM_b21102at 744.631 kb on - strand, within SM_b21102at 744.970 kb on - strandat 744.970 kb on - strandat 745.121 kb on - strand, within SM_b21103at 745.167 kb on + strand, within SM_b21103at 745.167 kb on + strand, within SM_b21103at 745.291 kb on + strand, within SM_b21103at 745.291 kb on + strand, within SM_b21103at 745.291 kb on + strand, within SM_b21103at 745.291 kb on + strand, within SM_b21103at 745.292 kb on - strand, within SM_b21103at 745.439 kb on - strand, within SM_b21103at 745.477 kb on + strand, within SM_b21103at 745.478 kb on - strand, within SM_b21103at 745.478 kb on - strand, within SM_b21103at 745.478 kb on - strand, within SM_b21103at 745.606 kb on + strand, within SM_b21103at 745.636 kb on + strand, within SM_b21103at 745.637 kb on - strand, within SM_b21103at 745.637 kb on - strand, within SM_b21103at 745.637 kb on - strand, within SM_b21103at 745.711 kb on + strand, within SM_b21103at 745.711 kb on + strand, within SM_b21103at 745.712 kb on - strand, within SM_b21103at 745.712 kb on - strand, within SM_b21103at 745.747 kb on + strand, within SM_b21103at 745.747 kb on + strand, within SM_b21103at 745.747 kb on + strand, within SM_b21103at 745.747 kb on + strand, within SM_b21103at 745.748 kb on - strand, within SM_b21103at 746.458 kb on + strand, within SM_b21104at 746.459 kb on - strand, within SM_b21104at 746.527 kb on + strand, within SM_b21104at 746.527 kb on + strand, within SM_b21104at 746.528 kb on - strand, within SM_b21104at 746.528 kb on - strand, within SM_b21104at 746.657 kb on - strand, within SM_b21104at 746.657 kb on - strand, within SM_b21104at 746.989 kb on + strand, within SM_b21104at 746.989 kb on + strand, within SM_b21104at 746.990 kb on - strand, within SM_b21104at 746.990 kb on - strand, within SM_b21104at 746.990 kb on - strand, within SM_b21104at 747.049 kb on + strand, within SM_b21104at 747.049 kb on + strand, within SM_b21104at 747.050 kb on - strand, within SM_b21104at 747.130 kb on + strand, within SM_b21104at 747.131 kb on - strand, within SM_b21104at 747.170 kb on - strandat 747.170 kb on - strandat 747.205 kb on + strandat 747.256 kb on + strandat 747.256 kb on + strandat 747.263 kb on + strandat 747.263 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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744,136 + SM_b21102 0.14 -1.8
744,136 + SM_b21102 0.14 +0.5
744,136 + SM_b21102 0.14 -2.4
744,136 + SM_b21102 0.14 -0.3
744,136 + SM_b21102 0.14 -0.4
744,137 - SM_b21102 0.15 -0.5
744,137 - SM_b21102 0.15 -0.0
744,137 - SM_b21102 0.15 +3.6
744,138 + SM_b21102 0.15 -2.3
744,138 + SM_b21102 0.15 -0.2
744,138 + SM_b21102 0.15 -3.1
744,138 + SM_b21102 0.15 +0.8
744,138 + SM_b21102 0.15 -1.6
744,138 + SM_b21102 0.15 +0.6
744,201 + SM_b21102 0.23 -0.0
744,202 - SM_b21102 0.23 +0.8
744,202 - SM_b21102 0.23 +0.0
744,202 - SM_b21102 0.23 -0.2
744,238 - SM_b21102 0.27 +1.0
744,270 + SM_b21102 0.32 +0.5
744,270 + SM_b21102 0.32 +1.0
744,271 - SM_b21102 0.32 -0.1
744,395 - SM_b21102 0.48 +0.2
744,603 + SM_b21102 0.74 +0.2
744,630 + SM_b21102 0.78 +0.0
744,630 + SM_b21102 0.78 +0.8
744,631 - SM_b21102 0.78 -0.8
744,970 - -0.3
744,970 - +0.8
745,121 - SM_b21103 0.11 +1.5
745,167 + SM_b21103 0.15 -3.0
745,167 + SM_b21103 0.15 +1.6
745,291 + SM_b21103 0.24 +2.2
745,291 + SM_b21103 0.24 -1.1
745,291 + SM_b21103 0.24 +0.7
745,291 + SM_b21103 0.24 -1.7
745,292 - SM_b21103 0.24 -1.0
745,439 - SM_b21103 0.35 +0.3
745,477 + SM_b21103 0.38 -0.5
745,478 - SM_b21103 0.38 +1.0
745,478 - SM_b21103 0.38 -1.0
745,478 - SM_b21103 0.38 -0.2
745,606 + SM_b21103 0.48 +0.5
745,636 + SM_b21103 0.50 -0.2
745,637 - SM_b21103 0.50 +1.3
745,637 - SM_b21103 0.50 +0.3
745,637 - SM_b21103 0.50 +0.3
745,711 + SM_b21103 0.56 +3.0
745,711 + SM_b21103 0.56 +2.7
745,712 - SM_b21103 0.56 -0.2
745,712 - SM_b21103 0.56 -0.1
745,747 + SM_b21103 0.59 -0.3
745,747 + SM_b21103 0.59 +1.5
745,747 + SM_b21103 0.59 -0.1
745,747 + SM_b21103 0.59 +0.8
745,748 - SM_b21103 0.59 +1.7
746,458 + SM_b21104 0.11 +0.1
746,459 - SM_b21104 0.11 -0.4
746,527 + SM_b21104 0.18 +1.9
746,527 + SM_b21104 0.18 -0.2
746,528 - SM_b21104 0.19 +0.6
746,528 - SM_b21104 0.19 -0.5
746,657 - SM_b21104 0.33 -0.9
746,657 - SM_b21104 0.33 -0.1
746,989 + SM_b21104 0.70 -0.8
746,989 + SM_b21104 0.70 -1.4
746,990 - SM_b21104 0.70 -1.3
746,990 - SM_b21104 0.70 +0.3
746,990 - SM_b21104 0.70 +0.4
747,049 + SM_b21104 0.77 +2.3
747,049 + SM_b21104 0.77 -1.8
747,050 - SM_b21104 0.77 +0.3
747,130 + SM_b21104 0.86 +0.4
747,131 - SM_b21104 0.86 -0.1
747,170 - -2.7
747,170 - +1.0
747,205 + -0.1
747,256 + +3.6
747,256 + -0.5
747,263 + +0.3
747,263 + -0.6

Or see this region's nucleotide sequence