Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21094 and SM_b21095 overlap by 4 nucleotides SM_b21095 and SM_b21096 are separated by 8 nucleotides SM_b21096 and SM_b21097 are separated by 49 nucleotides SM_b21097 and SM_b21098 are separated by 82 nucleotides
SM_b21094: SM_b21094 - argininosuccinate lyase, at 736,510 to 737,976
_b21094
SM_b21095: SM_b21095 - amino acid ABC transporter permease, at 737,973 to 738,845
_b21095
SM_b21096: SM_b21096 - amino acid transporter ABC transporter ATP-binding protein, at 738,854 to 739,624
_b21096
SM_b21097: SM_b21097 - amino acid ABC transporter substrate-binding protein, at 739,674 to 740,516
_b21097
SM_b21098: SM_b21098 - hypothetical protein, at 740,599 to 741,396
_b21098
Position (kb) 738
739
740 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 738.015 kb on + strand at 738.053 kb on + strand at 738.141 kb on + strand, within SM_b21095 at 738.141 kb on + strand, within SM_b21095 at 738.142 kb on - strand, within SM_b21095 at 738.142 kb on - strand, within SM_b21095 at 738.186 kb on + strand, within SM_b21095 at 738.187 kb on - strand, within SM_b21095 at 738.187 kb on - strand, within SM_b21095 at 738.300 kb on + strand, within SM_b21095 at 738.301 kb on - strand, within SM_b21095 at 738.302 kb on + strand, within SM_b21095 at 738.302 kb on + strand, within SM_b21095 at 738.303 kb on - strand, within SM_b21095 at 738.303 kb on - strand, within SM_b21095 at 738.303 kb on - strand, within SM_b21095 at 738.303 kb on - strand, within SM_b21095 at 738.303 kb on - strand, within SM_b21095 at 738.303 kb on - strand at 738.473 kb on + strand, within SM_b21095 at 738.473 kb on + strand, within SM_b21095 at 738.473 kb on + strand, within SM_b21095 at 738.474 kb on - strand, within SM_b21095 at 738.522 kb on + strand, within SM_b21095 at 738.679 kb on + strand, within SM_b21095 at 738.702 kb on + strand, within SM_b21095 at 738.702 kb on + strand, within SM_b21095 at 738.702 kb on + strand, within SM_b21095 at 738.702 kb on + strand, within SM_b21095 at 738.703 kb on - strand, within SM_b21095 at 738.703 kb on - strand, within SM_b21095 at 738.792 kb on + strand at 738.793 kb on - strand at 738.793 kb on - strand at 738.793 kb on - strand at 738.794 kb on + strand at 738.865 kb on + strand at 738.866 kb on - strand at 738.866 kb on - strand at 738.899 kb on + strand at 738.900 kb on - strand at 739.511 kb on - strand, within SM_b21096 at 739.807 kb on - strand, within SM_b21097 at 739.821 kb on + strand, within SM_b21097 at 739.822 kb on - strand, within SM_b21097 at 739.967 kb on + strand, within SM_b21097 at 739.973 kb on + strand, within SM_b21097 at 740.006 kb on + strand, within SM_b21097 at 740.025 kb on + strand, within SM_b21097 at 740.025 kb on + strand, within SM_b21097 at 740.050 kb on - strand, within SM_b21097 at 740.050 kb on - strand, within SM_b21097 at 740.107 kb on + strand, within SM_b21097 at 740.316 kb on + strand, within SM_b21097 at 740.317 kb on - strand, within SM_b21097 at 740.317 kb on - strand, within SM_b21097 at 740.350 kb on - strand, within SM_b21097 at 740.350 kb on - strand, within SM_b21097 at 740.350 kb on - strand, within SM_b21097 at 740.436 kb on + strand at 740.457 kb on + strand at 740.457 kb on + strand at 740.457 kb on + strand at 740.457 kb on + strand at 740.458 kb on - strand at 740.458 kb on - strand at 740.490 kb on + strand at 740.490 kb on + strand at 740.491 kb on - strand at 740.515 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 738,015 + -1.5 738,053 + -0.1 738,141 + SM_b21095 0.19 -1.3 738,141 + SM_b21095 0.19 -0.1 738,142 - SM_b21095 0.19 -3.6 738,142 - SM_b21095 0.19 +0.4 738,186 + SM_b21095 0.24 -0.0 738,187 - SM_b21095 0.25 -0.3 738,187 - SM_b21095 0.25 -0.4 738,300 + SM_b21095 0.37 +0.0 738,301 - SM_b21095 0.38 +0.7 738,302 + SM_b21095 0.38 -2.4 738,302 + SM_b21095 0.38 +1.0 738,303 - SM_b21095 0.38 +0.3 738,303 - SM_b21095 0.38 +1.1 738,303 - SM_b21095 0.38 +1.0 738,303 - SM_b21095 0.38 +0.9 738,303 - SM_b21095 0.38 -0.4 738,303 - +1.0 738,473 + SM_b21095 0.57 -0.2 738,473 + SM_b21095 0.57 +0.1 738,473 + SM_b21095 0.57 +1.6 738,474 - SM_b21095 0.57 -2.3 738,522 + SM_b21095 0.63 -0.2 738,679 + SM_b21095 0.81 -1.0 738,702 + SM_b21095 0.84 -0.9 738,702 + SM_b21095 0.84 -0.6 738,702 + SM_b21095 0.84 -1.2 738,702 + SM_b21095 0.84 +0.1 738,703 - SM_b21095 0.84 +1.0 738,703 - SM_b21095 0.84 -0.1 738,792 + +0.2 738,793 - +0.4 738,793 - +0.4 738,793 - -0.8 738,794 + +0.5 738,865 + +1.6 738,866 - +1.7 738,866 - +1.5 738,899 + +0.5 738,900 - +1.0 739,511 - SM_b21096 0.85 -1.3 739,807 - SM_b21097 0.16 +0.1 739,821 + SM_b21097 0.17 -0.4 739,822 - SM_b21097 0.18 -0.6 739,967 + SM_b21097 0.35 -0.1 739,973 + SM_b21097 0.35 -0.8 740,006 + SM_b21097 0.39 -3.6 740,025 + SM_b21097 0.42 +0.5 740,025 + SM_b21097 0.42 +2.3 740,050 - SM_b21097 0.45 +1.0 740,050 - SM_b21097 0.45 +0.9 740,107 + SM_b21097 0.51 -0.3 740,316 + SM_b21097 0.76 -0.2 740,317 - SM_b21097 0.76 -3.1 740,317 - SM_b21097 0.76 -0.5 740,350 - SM_b21097 0.80 +0.7 740,350 - SM_b21097 0.80 +0.6 740,350 - SM_b21097 0.80 +0.9 740,436 + -0.8 740,457 + +0.7 740,457 + -0.3 740,457 + +1.3 740,457 + +1.4 740,458 - -0.7 740,458 - +1.6 740,490 + +0.4 740,490 + -1.3 740,491 - -0.0 740,515 - -1.3
Or see this region's nucleotide sequence