Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21089 and SM_b21090 are separated by 85 nucleotides SM_b21090 and SM_b21091 are separated by 304 nucleotides
SM_b21089: SM_b21089 - membrane-anchored racemase, at 731,300 to 732,370
_b21089
SM_b21090: SM_b21090 - hypothetical protein, at 732,456 to 733,592
_b21090
SM_b21091: SM_b21091 - cell-wall lytic enzyme, muramidase (lysozyme) protein, at 733,897 to 734,907
_b21091
Position (kb) 732
733
734 Strain fitness (log2 ratio) -2
-1
0
1
2 at 731.532 kb on + strand, within SM_b21089 at 731.594 kb on - strand, within SM_b21089 at 731.594 kb on - strand, within SM_b21089 at 731.631 kb on + strand, within SM_b21089 at 731.632 kb on - strand, within SM_b21089 at 731.642 kb on + strand, within SM_b21089 at 731.678 kb on + strand, within SM_b21089 at 731.679 kb on - strand, within SM_b21089 at 731.679 kb on - strand, within SM_b21089 at 731.679 kb on - strand, within SM_b21089 at 731.696 kb on + strand, within SM_b21089 at 731.884 kb on - strand, within SM_b21089 at 731.949 kb on + strand, within SM_b21089 at 731.949 kb on + strand, within SM_b21089 at 731.950 kb on - strand, within SM_b21089 at 731.950 kb on - strand, within SM_b21089 at 732.018 kb on - strand, within SM_b21089 at 732.033 kb on - strand, within SM_b21089 at 732.041 kb on + strand, within SM_b21089 at 732.042 kb on - strand, within SM_b21089 at 732.042 kb on - strand, within SM_b21089 at 732.129 kb on - strand, within SM_b21089 at 732.621 kb on + strand, within SM_b21090 at 732.621 kb on + strand, within SM_b21090 at 732.621 kb on + strand, within SM_b21090 at 732.621 kb on + strand, within SM_b21090 at 732.622 kb on - strand, within SM_b21090 at 732.759 kb on + strand, within SM_b21090 at 732.930 kb on + strand, within SM_b21090 at 732.930 kb on + strand, within SM_b21090 at 733.134 kb on + strand, within SM_b21090 at 733.134 kb on + strand, within SM_b21090 at 733.134 kb on + strand, within SM_b21090 at 733.134 kb on + strand, within SM_b21090 at 733.135 kb on - strand, within SM_b21090 at 733.141 kb on - strand, within SM_b21090 at 733.150 kb on - strand, within SM_b21090 at 733.250 kb on - strand, within SM_b21090 at 733.470 kb on + strand, within SM_b21090 at 733.471 kb on - strand, within SM_b21090 at 733.471 kb on - strand, within SM_b21090 at 733.670 kb on - strand at 733.670 kb on - strand at 733.670 kb on - strand at 733.733 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 731,532 + SM_b21089 0.22 +0.4 731,594 - SM_b21089 0.27 +0.4 731,594 - SM_b21089 0.27 -0.3 731,631 + SM_b21089 0.31 +1.5 731,632 - SM_b21089 0.31 -1.3 731,642 + SM_b21089 0.32 -0.3 731,678 + SM_b21089 0.35 -1.5 731,679 - SM_b21089 0.35 -1.3 731,679 - SM_b21089 0.35 -0.5 731,679 - SM_b21089 0.35 -0.3 731,696 + SM_b21089 0.37 +0.3 731,884 - SM_b21089 0.55 -1.8 731,949 + SM_b21089 0.61 +1.0 731,949 + SM_b21089 0.61 +1.3 731,950 - SM_b21089 0.61 -0.5 731,950 - SM_b21089 0.61 +0.1 732,018 - SM_b21089 0.67 +2.0 732,033 - SM_b21089 0.68 -0.1 732,041 + SM_b21089 0.69 -0.4 732,042 - SM_b21089 0.69 +0.2 732,042 - SM_b21089 0.69 -0.6 732,129 - SM_b21089 0.77 +0.5 732,621 + SM_b21090 0.15 -0.2 732,621 + SM_b21090 0.15 +0.5 732,621 + SM_b21090 0.15 -0.6 732,621 + SM_b21090 0.15 -0.2 732,622 - SM_b21090 0.15 -0.5 732,759 + SM_b21090 0.27 +0.7 732,930 + SM_b21090 0.42 +0.1 732,930 + SM_b21090 0.42 +0.0 733,134 + SM_b21090 0.60 -0.7 733,134 + SM_b21090 0.60 +0.6 733,134 + SM_b21090 0.60 +0.3 733,134 + SM_b21090 0.60 +1.3 733,135 - SM_b21090 0.60 -1.3 733,141 - SM_b21090 0.60 -1.4 733,150 - SM_b21090 0.61 -0.2 733,250 - SM_b21090 0.70 +0.4 733,470 + SM_b21090 0.89 +0.5 733,471 - SM_b21090 0.89 -1.6 733,471 - SM_b21090 0.89 +0.3 733,670 - -2.2 733,670 - -1.8 733,670 - -1.1 733,733 + +0.3
Or see this region's nucleotide sequence