Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21082 and SM_b21083 are separated by 135 nucleotides SM_b21083 and SM_b21084 overlap by 4 nucleotides SM_b21084 and SM_b21085 are separated by 62 nucleotides
SM_b21082: SM_b21082 - mannose-6-phosphate isomerase, GDP-mannose pyrophosphorylase, at 719,985 to 722,288
_b21082
SM_b21083: SM_b21083 - hypothetical protein, at 722,424 to 722,867
_b21083
SM_b21084: SM_b21084 - hypothetical protein, at 722,864 to 723,217
_b21084
SM_b21085: SM_b21085 - hypothetical protein, at 723,280 to 724,932
_b21085
Position (kb) 722
723
724 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 721.866 kb on + strand, within SM_b21082 at 721.867 kb on - strand, within SM_b21082 at 722.072 kb on + strand at 722.155 kb on + strand at 722.155 kb on + strand at 722.155 kb on + strand at 722.160 kb on + strand at 722.160 kb on + strand at 722.160 kb on + strand at 722.160 kb on + strand at 722.160 kb on + strand at 722.160 kb on + strand at 722.160 kb on + strand at 722.160 kb on + strand at 722.161 kb on - strand at 722.161 kb on - strand at 722.188 kb on - strand at 722.214 kb on + strand at 722.273 kb on + strand at 722.273 kb on + strand at 722.312 kb on + strand at 722.313 kb on - strand at 722.316 kb on + strand at 722.337 kb on - strand at 722.337 kb on - strand at 722.362 kb on - strand at 722.369 kb on - strand at 723.140 kb on + strand, within SM_b21084 at 723.140 kb on + strand, within SM_b21084 at 723.219 kb on + strand at 723.220 kb on - strand at 723.220 kb on - strand at 723.221 kb on + strand at 723.476 kb on - strand, within SM_b21085 at 724.062 kb on + strand, within SM_b21085 at 724.063 kb on - strand, within SM_b21085 at 724.063 kb on - strand, within SM_b21085 at 724.100 kb on - strand, within SM_b21085 at 724.100 kb on - strand, within SM_b21085
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 721,866 + SM_b21082 0.82 +0.4 721,867 - SM_b21082 0.82 -0.2 722,072 + +3.0 722,155 + -2.5 722,155 + -0.2 722,155 + +0.6 722,160 + +0.9 722,160 + -1.3 722,160 + +0.1 722,160 + +1.5 722,160 + +0.5 722,160 + +0.1 722,160 + +0.5 722,160 + +0.4 722,161 - -1.1 722,161 - +0.5 722,188 - -2.4 722,214 + -1.8 722,273 + +0.7 722,273 + -0.1 722,312 + +3.0 722,313 - +0.4 722,316 + -0.3 722,337 - +0.2 722,337 - +0.5 722,362 - -0.5 722,369 - +0.7 723,140 + SM_b21084 0.78 -1.1 723,140 + SM_b21084 0.78 -2.9 723,219 + +1.5 723,220 - +1.1 723,220 - +0.2 723,221 + -0.6 723,476 - SM_b21085 0.12 -1.7 724,062 + SM_b21085 0.47 +0.2 724,063 - SM_b21085 0.47 +0.8 724,063 - SM_b21085 0.47 -1.4 724,100 - SM_b21085 0.50 +0.2 724,100 - SM_b21085 0.50 +1.4
Or see this region's nucleotide sequence