Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21075 and SM_b21076 overlap by 11 nucleotides SM_b21076 and SM_b21077 are separated by 149 nucleotides SM_b21077 and SM_b21078 overlap by 2 nucleotides
SM_b21075: SM_b21075 - glycosyltransferase, at 712,082 to 713,314
_b21075
SM_b21076: SM_b21076 - glycosyltransferase, at 713,304 to 714,437
_b21076
SM_b21077: SM_b21077 - hypothetical protein, at 714,587 to 714,877
_b21077
SM_b21078: SM_b21078 - glycosyltransferase, at 714,876 to 716,084
_b21078
Position (kb) 713
714
715 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 712.309 kb on - strand, within SM_b21075 at 712.309 kb on - strand, within SM_b21075 at 712.319 kb on + strand, within SM_b21075 at 712.509 kb on + strand, within SM_b21075 at 712.509 kb on + strand, within SM_b21075 at 712.509 kb on + strand, within SM_b21075 at 712.509 kb on + strand, within SM_b21075 at 712.510 kb on - strand, within SM_b21075 at 712.510 kb on - strand, within SM_b21075 at 712.514 kb on + strand, within SM_b21075 at 712.514 kb on + strand, within SM_b21075 at 712.515 kb on - strand, within SM_b21075 at 712.515 kb on - strand, within SM_b21075 at 712.518 kb on + strand, within SM_b21075 at 712.518 kb on + strand, within SM_b21075 at 712.519 kb on - strand, within SM_b21075 at 712.559 kb on + strand, within SM_b21075 at 712.560 kb on - strand, within SM_b21075 at 712.610 kb on + strand, within SM_b21075 at 712.611 kb on - strand, within SM_b21075 at 712.621 kb on + strand, within SM_b21075 at 712.621 kb on + strand, within SM_b21075 at 712.622 kb on - strand, within SM_b21075 at 712.627 kb on - strand, within SM_b21075 at 712.627 kb on - strand, within SM_b21075 at 712.627 kb on - strand, within SM_b21075 at 712.685 kb on + strand, within SM_b21075 at 712.686 kb on - strand, within SM_b21075 at 712.686 kb on - strand, within SM_b21075 at 712.699 kb on + strand, within SM_b21075 at 712.787 kb on + strand, within SM_b21075 at 712.788 kb on - strand, within SM_b21075 at 712.788 kb on - strand, within SM_b21075 at 712.788 kb on - strand, within SM_b21075 at 712.790 kb on + strand, within SM_b21075 at 712.790 kb on + strand, within SM_b21075 at 712.791 kb on - strand, within SM_b21075 at 712.791 kb on - strand, within SM_b21075 at 712.791 kb on - strand, within SM_b21075 at 712.796 kb on - strand, within SM_b21075 at 712.817 kb on + strand, within SM_b21075 at 712.839 kb on + strand, within SM_b21075 at 712.840 kb on - strand, within SM_b21075 at 712.921 kb on + strand, within SM_b21075 at 712.921 kb on + strand, within SM_b21075 at 712.947 kb on - strand, within SM_b21075 at 712.964 kb on + strand, within SM_b21075 at 712.964 kb on + strand, within SM_b21075 at 712.964 kb on + strand, within SM_b21075 at 712.964 kb on + strand, within SM_b21075 at 712.964 kb on + strand, within SM_b21075 at 712.965 kb on - strand, within SM_b21075 at 712.965 kb on - strand, within SM_b21075 at 713.025 kb on + strand, within SM_b21075 at 713.026 kb on - strand, within SM_b21075 at 713.131 kb on + strand, within SM_b21075 at 713.132 kb on - strand, within SM_b21075 at 713.312 kb on + strand at 713.313 kb on - strand at 713.316 kb on + strand at 713.316 kb on + strand at 713.317 kb on - strand at 713.317 kb on - strand at 713.367 kb on + strand at 713.368 kb on - strand at 713.504 kb on + strand, within SM_b21076 at 713.516 kb on - strand, within SM_b21076 at 713.516 kb on - strand, within SM_b21076 at 713.516 kb on - strand, within SM_b21076 at 713.620 kb on - strand, within SM_b21076 at 713.804 kb on + strand, within SM_b21076 at 714.042 kb on + strand, within SM_b21076 at 714.043 kb on - strand, within SM_b21076 at 714.043 kb on - strand, within SM_b21076 at 714.043 kb on - strand, within SM_b21076 at 714.045 kb on + strand, within SM_b21076 at 714.045 kb on + strand, within SM_b21076 at 714.045 kb on + strand, within SM_b21076 at 714.045 kb on + strand, within SM_b21076 at 714.045 kb on + strand, within SM_b21076 at 714.045 kb on + strand, within SM_b21076 at 714.045 kb on + strand, within SM_b21076 at 714.045 kb on + strand, within SM_b21076 at 714.046 kb on - strand, within SM_b21076 at 714.046 kb on - strand, within SM_b21076 at 714.046 kb on - strand, within SM_b21076 at 714.046 kb on - strand, within SM_b21076 at 714.046 kb on - strand, within SM_b21076 at 714.046 kb on - strand, within SM_b21076 at 714.079 kb on + strand, within SM_b21076 at 714.079 kb on + strand, within SM_b21076 at 714.079 kb on + strand, within SM_b21076 at 714.092 kb on - strand, within SM_b21076 at 714.092 kb on - strand, within SM_b21076 at 714.153 kb on - strand, within SM_b21076 at 714.225 kb on - strand, within SM_b21076 at 714.339 kb on + strand at 714.339 kb on + strand at 714.340 kb on - strand at 714.340 kb on - strand at 714.389 kb on + strand at 714.416 kb on + strand at 714.417 kb on - strand at 714.437 kb on + strand at 714.438 kb on - strand at 714.438 kb on - strand at 714.457 kb on + strand at 714.457 kb on + strand at 714.460 kb on - strand at 714.501 kb on + strand at 714.527 kb on + strand at 714.619 kb on + strand, within SM_b21077 at 714.619 kb on + strand, within SM_b21077 at 714.620 kb on - strand, within SM_b21077 at 714.620 kb on - strand, within SM_b21077 at 714.680 kb on + strand, within SM_b21077 at 714.680 kb on + strand, within SM_b21077 at 714.681 kb on - strand, within SM_b21077 at 714.749 kb on + strand, within SM_b21077 at 714.749 kb on + strand, within SM_b21077 at 714.868 kb on + strand at 714.918 kb on - strand at 714.918 kb on - strand at 714.955 kb on + strand at 714.981 kb on - strand at 715.088 kb on - strand, within SM_b21078 at 715.201 kb on - strand, within SM_b21078 at 715.201 kb on - strand, within SM_b21078 at 715.201 kb on - strand, within SM_b21078 at 715.251 kb on + strand, within SM_b21078 at 715.251 kb on + strand, within SM_b21078 at 715.251 kb on + strand, within SM_b21078 at 715.251 kb on + strand, within SM_b21078 at 715.251 kb on + strand, within SM_b21078 at 715.251 kb on + strand, within SM_b21078 at 715.252 kb on - strand, within SM_b21078 at 715.252 kb on - strand, within SM_b21078 at 715.252 kb on - strand, within SM_b21078 at 715.255 kb on + strand, within SM_b21078 at 715.256 kb on - strand, within SM_b21078 at 715.256 kb on - strand, within SM_b21078 at 715.299 kb on - strand, within SM_b21078 at 715.330 kb on + strand, within SM_b21078 at 715.330 kb on + strand, within SM_b21078 at 715.331 kb on - strand, within SM_b21078 at 715.331 kb on - strand, within SM_b21078 at 715.391 kb on - strand, within SM_b21078 at 715.391 kb on - strand, within SM_b21078 at 715.428 kb on - strand, within SM_b21078 at 715.433 kb on - strand, within SM_b21078
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 712,309 - SM_b21075 0.18 +0.4 712,309 - SM_b21075 0.18 +0.7 712,319 + SM_b21075 0.19 +1.0 712,509 + SM_b21075 0.35 +0.5 712,509 + SM_b21075 0.35 +0.4 712,509 + SM_b21075 0.35 -2.2 712,509 + SM_b21075 0.35 -0.2 712,510 - SM_b21075 0.35 -0.5 712,510 - SM_b21075 0.35 -0.8 712,514 + SM_b21075 0.35 -0.1 712,514 + SM_b21075 0.35 -1.9 712,515 - SM_b21075 0.35 +0.4 712,515 - SM_b21075 0.35 -0.3 712,518 + SM_b21075 0.35 +1.2 712,518 + SM_b21075 0.35 -1.3 712,519 - SM_b21075 0.35 -0.3 712,559 + SM_b21075 0.39 +1.0 712,560 - SM_b21075 0.39 -2.2 712,610 + SM_b21075 0.43 -2.8 712,611 - SM_b21075 0.43 -0.6 712,621 + SM_b21075 0.44 +0.0 712,621 + SM_b21075 0.44 +0.4 712,622 - SM_b21075 0.44 +0.2 712,627 - SM_b21075 0.44 -1.7 712,627 - SM_b21075 0.44 +1.1 712,627 - SM_b21075 0.44 -1.2 712,685 + SM_b21075 0.49 -2.7 712,686 - SM_b21075 0.49 +0.9 712,686 - SM_b21075 0.49 +0.9 712,699 + SM_b21075 0.50 +2.0 712,787 + SM_b21075 0.57 +1.0 712,788 - SM_b21075 0.57 -3.0 712,788 - SM_b21075 0.57 +0.3 712,788 - SM_b21075 0.57 -2.8 712,790 + SM_b21075 0.57 +0.1 712,790 + SM_b21075 0.57 -0.3 712,791 - SM_b21075 0.58 -1.4 712,791 - SM_b21075 0.58 -0.7 712,791 - SM_b21075 0.58 -0.4 712,796 - SM_b21075 0.58 +0.8 712,817 + SM_b21075 0.60 -0.0 712,839 + SM_b21075 0.61 -0.7 712,840 - SM_b21075 0.61 -0.1 712,921 + SM_b21075 0.68 -2.0 712,921 + SM_b21075 0.68 -1.4 712,947 - SM_b21075 0.70 +0.8 712,964 + SM_b21075 0.72 -0.9 712,964 + SM_b21075 0.72 -0.8 712,964 + SM_b21075 0.72 -1.9 712,964 + SM_b21075 0.72 +1.7 712,964 + SM_b21075 0.72 -0.5 712,965 - SM_b21075 0.72 +0.6 712,965 - SM_b21075 0.72 -0.8 713,025 + SM_b21075 0.76 -0.5 713,026 - SM_b21075 0.77 -1.1 713,131 + SM_b21075 0.85 -0.2 713,132 - SM_b21075 0.85 -2.9 713,312 + -1.6 713,313 - -0.6 713,316 + +1.0 713,316 + +0.7 713,317 - +0.7 713,317 - +1.1 713,367 + +0.1 713,368 - +0.3 713,504 + SM_b21076 0.18 +0.1 713,516 - SM_b21076 0.19 +0.0 713,516 - SM_b21076 0.19 +1.5 713,516 - SM_b21076 0.19 -0.9 713,620 - SM_b21076 0.28 +0.6 713,804 + SM_b21076 0.44 +0.3 714,042 + SM_b21076 0.65 -0.8 714,043 - SM_b21076 0.65 -1.3 714,043 - SM_b21076 0.65 +1.5 714,043 - SM_b21076 0.65 -0.8 714,045 + SM_b21076 0.65 +0.5 714,045 + SM_b21076 0.65 +0.4 714,045 + SM_b21076 0.65 -0.3 714,045 + SM_b21076 0.65 +0.4 714,045 + SM_b21076 0.65 -1.3 714,045 + SM_b21076 0.65 -2.3 714,045 + SM_b21076 0.65 +2.1 714,045 + SM_b21076 0.65 -1.3 714,046 - SM_b21076 0.65 +1.9 714,046 - SM_b21076 0.65 -0.2 714,046 - SM_b21076 0.65 -3.3 714,046 - SM_b21076 0.65 -0.1 714,046 - SM_b21076 0.65 -2.4 714,046 - SM_b21076 0.65 +0.2 714,079 + SM_b21076 0.68 +0.1 714,079 + SM_b21076 0.68 +1.0 714,079 + SM_b21076 0.68 +0.7 714,092 - SM_b21076 0.69 +0.8 714,092 - SM_b21076 0.69 -0.2 714,153 - SM_b21076 0.75 -2.5 714,225 - SM_b21076 0.81 -1.5 714,339 + +0.3 714,339 + -1.1 714,340 - +0.8 714,340 - +0.1 714,389 + +0.0 714,416 + +0.6 714,417 - -2.4 714,437 + -1.4 714,438 - -2.6 714,438 - -1.3 714,457 + -0.8 714,457 + -1.4 714,460 - -2.5 714,501 + +0.2 714,527 + -0.2 714,619 + SM_b21077 0.11 -1.0 714,619 + SM_b21077 0.11 +0.9 714,620 - SM_b21077 0.11 +0.1 714,620 - SM_b21077 0.11 +0.0 714,680 + SM_b21077 0.32 -1.3 714,680 + SM_b21077 0.32 -1.7 714,681 - SM_b21077 0.32 -1.9 714,749 + SM_b21077 0.56 +0.8 714,749 + SM_b21077 0.56 -1.0 714,868 + -0.8 714,918 - +0.8 714,918 - +0.0 714,955 + -1.7 714,981 - -0.3 715,088 - SM_b21078 0.18 +0.0 715,201 - SM_b21078 0.27 -2.0 715,201 - SM_b21078 0.27 -0.8 715,201 - SM_b21078 0.27 +0.2 715,251 + SM_b21078 0.31 +0.5 715,251 + SM_b21078 0.31 +0.7 715,251 + SM_b21078 0.31 -0.3 715,251 + SM_b21078 0.31 +0.0 715,251 + SM_b21078 0.31 -0.4 715,251 + SM_b21078 0.31 -1.1 715,252 - SM_b21078 0.31 +0.1 715,252 - SM_b21078 0.31 +2.6 715,252 - SM_b21078 0.31 +1.8 715,255 + SM_b21078 0.31 -1.1 715,256 - SM_b21078 0.31 +1.4 715,256 - SM_b21078 0.31 +2.0 715,299 - SM_b21078 0.35 +2.0 715,330 + SM_b21078 0.38 +3.0 715,330 + SM_b21078 0.38 +0.5 715,331 - SM_b21078 0.38 -0.2 715,331 - SM_b21078 0.38 -0.6 715,391 - SM_b21078 0.43 +0.5 715,391 - SM_b21078 0.43 -1.3 715,428 - SM_b21078 0.46 +1.0 715,433 - SM_b21078 0.46 +0.5
Or see this region's nucleotide sequence