Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21066

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21064 and SM_b21065 are separated by 15 nucleotidesSM_b21065 and SM_b21066 overlap by 4 nucleotidesSM_b21066 and SM_b21067 are separated by 15 nucleotides SM_b21064: SM_b21064 - hypothetical protein, at 698,639 to 699,172 _b21064 SM_b21065: SM_b21065 - hypothetical protein, at 699,188 to 700,165 _b21065 SM_b21066: SM_b21066 - glycosyltransferase, at 700,162 to 701,115 _b21066 SM_b21067: SM_b21067 - NDP-hexose methyltransferase, at 701,131 to 702,336 _b21067 Position (kb) 700 701 702Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 699.280 kb on + strandat 699.281 kb on - strandat 699.306 kb on + strand, within SM_b21065at 699.307 kb on - strand, within SM_b21065at 699.307 kb on - strand, within SM_b21065at 699.307 kb on - strand, within SM_b21065at 699.351 kb on - strand, within SM_b21065at 699.372 kb on + strand, within SM_b21065at 699.373 kb on - strand, within SM_b21065at 699.415 kb on - strand, within SM_b21065at 699.586 kb on + strand, within SM_b21065at 699.636 kb on - strand, within SM_b21065at 699.636 kb on - strand, within SM_b21065at 699.657 kb on + strand, within SM_b21065at 699.671 kb on + strand, within SM_b21065at 699.856 kb on + strand, within SM_b21065at 699.867 kb on + strand, within SM_b21065at 699.939 kb on - strand, within SM_b21065at 699.939 kb on - strand, within SM_b21065at 699.973 kb on + strand, within SM_b21065at 699.973 kb on + strand, within SM_b21065at 699.973 kb on + strand, within SM_b21065at 699.973 kb on + strand, within SM_b21065at 699.973 kb on + strand, within SM_b21065at 699.974 kb on - strand, within SM_b21065at 699.974 kb on - strand, within SM_b21065at 700.165 kb on + strandat 700.166 kb on - strandat 700.199 kb on - strandat 700.207 kb on + strandat 700.356 kb on + strand, within SM_b21066at 700.356 kb on + strand, within SM_b21066at 700.571 kb on + strand, within SM_b21066at 700.571 kb on + strand, within SM_b21066at 700.571 kb on + strand, within SM_b21066at 700.571 kb on + strand, within SM_b21066at 700.572 kb on - strand, within SM_b21066at 700.572 kb on - strand, within SM_b21066at 700.574 kb on + strand, within SM_b21066at 700.575 kb on - strand, within SM_b21066at 700.575 kb on - strand, within SM_b21066at 700.758 kb on + strand, within SM_b21066at 700.758 kb on + strand, within SM_b21066at 700.759 kb on - strand, within SM_b21066at 700.759 kb on - strand, within SM_b21066at 700.763 kb on + strand, within SM_b21066at 700.801 kb on + strand, within SM_b21066at 700.801 kb on + strand, within SM_b21066at 700.859 kb on + strand, within SM_b21066at 700.859 kb on + strand, within SM_b21066at 700.860 kb on - strand, within SM_b21066at 700.931 kb on + strand, within SM_b21066at 700.932 kb on - strand, within SM_b21066at 700.936 kb on + strand, within SM_b21066at 701.005 kb on - strand, within SM_b21066at 701.011 kb on - strand, within SM_b21066at 701.011 kb on - strand, within SM_b21066at 701.063 kb on - strandat 701.063 kb on - strandat 701.081 kb on + strandat 701.082 kb on - strandat 701.082 kb on - strandat 701.082 kb on - strandat 701.130 kb on - strandat 701.202 kb on - strandat 701.242 kb on + strandat 701.288 kb on + strand, within SM_b21067at 701.288 kb on + strand, within SM_b21067at 701.289 kb on - strand, within SM_b21067at 701.289 kb on - strand, within SM_b21067at 701.289 kb on - strand, within SM_b21067at 701.458 kb on + strand, within SM_b21067at 701.459 kb on - strand, within SM_b21067at 701.565 kb on + strand, within SM_b21067at 701.565 kb on + strand, within SM_b21067at 701.566 kb on - strand, within SM_b21067at 701.566 kb on - strand, within SM_b21067at 701.566 kb on - strand, within SM_b21067at 701.567 kb on + strand, within SM_b21067at 701.567 kb on + strand, within SM_b21067at 701.568 kb on - strand, within SM_b21067at 701.568 kb on - strand, within SM_b21067at 701.568 kb on - strand, within SM_b21067at 701.568 kb on - strandat 701.580 kb on - strand, within SM_b21067at 701.580 kb on - strand, within SM_b21067at 701.667 kb on - strand, within SM_b21067at 701.667 kb on - strand, within SM_b21067at 701.669 kb on + strand, within SM_b21067at 701.669 kb on + strand, within SM_b21067at 701.670 kb on - strand, within SM_b21067at 701.670 kb on - strand, within SM_b21067at 701.742 kb on + strand, within SM_b21067at 701.742 kb on + strand, within SM_b21067at 701.742 kb on + strand, within SM_b21067at 701.797 kb on - strand, within SM_b21067at 701.808 kb on + strand, within SM_b21067at 701.808 kb on + strand, within SM_b21067at 701.824 kb on + strand, within SM_b21067at 701.846 kb on + strand, within SM_b21067at 701.846 kb on + strand, within SM_b21067at 702.032 kb on - strand, within SM_b21067at 702.032 kb on - strand, within SM_b21067at 702.032 kb on - strand, within SM_b21067

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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699,280 + -0.4
699,281 - -0.3
699,306 + SM_b21065 0.12 -3.3
699,307 - SM_b21065 0.12 -0.0
699,307 - SM_b21065 0.12 +0.3
699,307 - SM_b21065 0.12 -0.4
699,351 - SM_b21065 0.17 +0.4
699,372 + SM_b21065 0.19 +0.0
699,373 - SM_b21065 0.19 +1.0
699,415 - SM_b21065 0.23 -0.8
699,586 + SM_b21065 0.41 -0.2
699,636 - SM_b21065 0.46 +3.4
699,636 - SM_b21065 0.46 +0.1
699,657 + SM_b21065 0.48 -2.2
699,671 + SM_b21065 0.49 -0.8
699,856 + SM_b21065 0.68 +1.0
699,867 + SM_b21065 0.69 +2.0
699,939 - SM_b21065 0.77 +0.5
699,939 - SM_b21065 0.77 -2.5
699,973 + SM_b21065 0.80 +0.3
699,973 + SM_b21065 0.80 -0.0
699,973 + SM_b21065 0.80 -2.2
699,973 + SM_b21065 0.80 -2.0
699,973 + SM_b21065 0.80 -1.7
699,974 - SM_b21065 0.80 +2.0
699,974 - SM_b21065 0.80 -0.9
700,165 + -0.2
700,166 - -0.3
700,199 - -1.5
700,207 + -1.5
700,356 + SM_b21066 0.20 +0.0
700,356 + SM_b21066 0.20 -0.7
700,571 + SM_b21066 0.43 +0.8
700,571 + SM_b21066 0.43 -0.9
700,571 + SM_b21066 0.43 +0.2
700,571 + SM_b21066 0.43 -2.0
700,572 - SM_b21066 0.43 -0.8
700,572 - SM_b21066 0.43 +0.5
700,574 + SM_b21066 0.43 -1.7
700,575 - SM_b21066 0.43 -2.4
700,575 - SM_b21066 0.43 +1.5
700,758 + SM_b21066 0.62 -1.1
700,758 + SM_b21066 0.62 +0.8
700,759 - SM_b21066 0.63 +0.6
700,759 - SM_b21066 0.63 +3.8
700,763 + SM_b21066 0.63 -0.1
700,801 + SM_b21066 0.67 -0.1
700,801 + SM_b21066 0.67 -1.0
700,859 + SM_b21066 0.73 +0.2
700,859 + SM_b21066 0.73 -1.1
700,860 - SM_b21066 0.73 +0.8
700,931 + SM_b21066 0.81 +1.1
700,932 - SM_b21066 0.81 -1.1
700,936 + SM_b21066 0.81 +0.9
701,005 - SM_b21066 0.88 -2.9
701,011 - SM_b21066 0.89 -2.0
701,011 - SM_b21066 0.89 +2.0
701,063 - -0.6
701,063 - +0.4
701,081 + -0.5
701,082 - +0.0
701,082 - +0.5
701,082 - +2.8
701,130 - +1.7
701,202 - -0.1
701,242 + -0.4
701,288 + SM_b21067 0.13 -0.8
701,288 + SM_b21067 0.13 +0.4
701,289 - SM_b21067 0.13 -0.1
701,289 - SM_b21067 0.13 +0.5
701,289 - SM_b21067 0.13 -0.9
701,458 + SM_b21067 0.27 -1.3
701,459 - SM_b21067 0.27 -2.6
701,565 + SM_b21067 0.36 +1.2
701,565 + SM_b21067 0.36 +3.0
701,566 - SM_b21067 0.36 -0.9
701,566 - SM_b21067 0.36 +0.0
701,566 - SM_b21067 0.36 -0.3
701,567 + SM_b21067 0.36 -1.7
701,567 + SM_b21067 0.36 +2.9
701,568 - SM_b21067 0.36 +1.3
701,568 - SM_b21067 0.36 +0.4
701,568 - SM_b21067 0.36 +0.4
701,568 - +2.0
701,580 - SM_b21067 0.37 +1.6
701,580 - SM_b21067 0.37 +1.0
701,667 - SM_b21067 0.44 +0.1
701,667 - SM_b21067 0.44 +0.5
701,669 + SM_b21067 0.45 -0.2
701,669 + SM_b21067 0.45 +0.1
701,670 - SM_b21067 0.45 -0.4
701,670 - SM_b21067 0.45 -1.4
701,742 + SM_b21067 0.51 -0.5
701,742 + SM_b21067 0.51 +3.7
701,742 + SM_b21067 0.51 -0.8
701,797 - SM_b21067 0.55 -0.0
701,808 + SM_b21067 0.56 -3.7
701,808 + SM_b21067 0.56 +1.1
701,824 + SM_b21067 0.57 +0.3
701,846 + SM_b21067 0.59 -3.0
701,846 + SM_b21067 0.59 -2.3
702,032 - SM_b21067 0.75 +0.1
702,032 - SM_b21067 0.75 -0.6
702,032 - SM_b21067 0.75 -2.1

Or see this region's nucleotide sequence