Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21035 and SM_b21036 are separated by 138 nucleotides SM_b21036 and SM_b21037 are separated by 162 nucleotides
SM_b21035: SM_b21035 - hypothetical protein, at 653,580 to 653,798
_b21035
SM_b21036: SM_b21036 - hypothetical protein, at 653,937 to 654,485
_b21036
SM_b21037: SM_b21037 - oligopeptidemurein peptide ABC transporter substrate-binding protein precursor, at 654,648 to 656,243
_b21037
Position (kb) 653
654
655 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 652.944 kb on + strand at 652.944 kb on + strand at 652.945 kb on - strand at 652.964 kb on - strand at 653.020 kb on + strand at 653.047 kb on - strand at 653.047 kb on - strand at 653.104 kb on + strand at 653.105 kb on - strand at 653.259 kb on - strand at 653.352 kb on + strand at 653.353 kb on - strand at 653.353 kb on - strand at 653.353 kb on - strand at 653.353 kb on - strand at 653.353 kb on - strand at 653.364 kb on + strand at 653.364 kb on + strand at 653.364 kb on + strand at 653.365 kb on - strand at 653.365 kb on - strand at 653.372 kb on + strand at 653.373 kb on - strand at 653.438 kb on + strand at 653.458 kb on + strand at 653.459 kb on - strand at 653.459 kb on - strand at 653.488 kb on + strand at 653.489 kb on - strand at 653.494 kb on - strand at 653.581 kb on + strand at 653.581 kb on + strand at 653.672 kb on + strand, within SM_b21035 at 653.673 kb on - strand, within SM_b21035 at 653.673 kb on - strand, within SM_b21035 at 653.771 kb on + strand, within SM_b21035 at 653.772 kb on - strand, within SM_b21035 at 653.772 kb on - strand, within SM_b21035 at 653.954 kb on + strand at 653.954 kb on + strand at 653.954 kb on + strand at 653.954 kb on + strand at 653.992 kb on - strand, within SM_b21036 at 654.533 kb on + strand at 654.533 kb on + strand at 654.533 kb on + strand at 654.534 kb on - strand at 654.534 kb on - strand at 654.541 kb on + strand at 654.542 kb on - strand at 654.542 kb on - strand at 654.621 kb on - strand at 654.762 kb on - strand at 654.768 kb on + strand at 654.768 kb on + strand at 654.769 kb on - strand at 654.769 kb on - strand at 654.795 kb on + strand at 654.796 kb on - strand at 654.833 kb on + strand, within SM_b21037 at 654.833 kb on + strand, within SM_b21037 at 654.834 kb on - strand, within SM_b21037 at 654.838 kb on - strand, within SM_b21037 at 654.852 kb on + strand, within SM_b21037 at 655.047 kb on + strand, within SM_b21037 at 655.048 kb on - strand, within SM_b21037 at 655.230 kb on + strand, within SM_b21037 at 655.230 kb on + strand, within SM_b21037 at 655.287 kb on + strand, within SM_b21037 at 655.287 kb on + strand, within SM_b21037 at 655.319 kb on + strand, within SM_b21037 at 655.320 kb on - strand, within SM_b21037 at 655.475 kb on - strand, within SM_b21037
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 652,944 + -0.2 652,944 + +2.9 652,945 - -0.5 652,964 - +3.4 653,020 + -3.3 653,047 - -1.1 653,047 - +1.5 653,104 + +1.1 653,105 - -1.3 653,259 - +0.1 653,352 + -0.6 653,353 - +0.2 653,353 - -0.4 653,353 - +0.5 653,353 - +0.4 653,353 - -0.4 653,364 + -0.2 653,364 + +0.1 653,364 + +0.5 653,365 - -2.2 653,365 - +1.9 653,372 + -0.2 653,373 - -0.8 653,438 + -0.7 653,458 + +3.1 653,459 - +0.6 653,459 - +0.6 653,488 + +2.1 653,489 - -1.1 653,494 - +0.1 653,581 + -3.0 653,581 + -1.1 653,672 + SM_b21035 0.42 +1.2 653,673 - SM_b21035 0.42 +1.2 653,673 - SM_b21035 0.42 -0.2 653,771 + SM_b21035 0.87 +0.6 653,772 - SM_b21035 0.88 -0.3 653,772 - SM_b21035 0.88 -0.3 653,954 + -1.6 653,954 + +0.8 653,954 + -0.3 653,954 + +1.5 653,992 - SM_b21036 0.10 -0.6 654,533 + +1.1 654,533 + -0.5 654,533 + -2.7 654,534 - -0.3 654,534 - +1.6 654,541 + +0.6 654,542 - +2.5 654,542 - -0.5 654,621 - +0.6 654,762 - -0.2 654,768 + -0.2 654,768 + -1.0 654,769 - -1.3 654,769 - -1.7 654,795 + -0.9 654,796 - +0.8 654,833 + SM_b21037 0.12 +0.4 654,833 + SM_b21037 0.12 -3.0 654,834 - SM_b21037 0.12 -1.9 654,838 - SM_b21037 0.12 -0.7 654,852 + SM_b21037 0.13 -1.6 655,047 + SM_b21037 0.25 -2.3 655,048 - SM_b21037 0.25 -0.6 655,230 + SM_b21037 0.36 -1.8 655,230 + SM_b21037 0.36 -2.1 655,287 + SM_b21037 0.40 -1.5 655,287 + SM_b21037 0.40 -1.4 655,319 + SM_b21037 0.42 -1.1 655,320 - SM_b21037 0.42 -0.6 655,475 - SM_b21037 0.52 +0.2
Or see this region's nucleotide sequence