Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20945 and SM_b20946 are separated by 52 nucleotides SM_b20946 and SM_b20947 are separated by 772 nucleotides
SM_b20945: SM_b20945 - hypothetical protein, at 1,171,541 to 1,172,806
_b20945
SM_b20946: SM_b20946 - galactosyltransferase, at 1,172,859 to 1,173,539
_b20946
SM_b20947: SM_b20947 - posttranscriptional regulator, repressor protein, at 1,174,312 to 1,174,608
_b20947
Position (kb)
1172
1173
1174 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1172.765 kb on - strand at 1172.945 kb on - strand, within SM_b20946 at 1172.945 kb on - strand, within SM_b20946 at 1172.945 kb on - strand, within SM_b20946 at 1172.974 kb on + strand, within SM_b20946 at 1173.037 kb on + strand, within SM_b20946 at 1173.158 kb on + strand, within SM_b20946 at 1173.230 kb on - strand, within SM_b20946 at 1173.291 kb on - strand, within SM_b20946 at 1173.291 kb on - strand, within SM_b20946 at 1173.346 kb on + strand, within SM_b20946 at 1173.347 kb on - strand, within SM_b20946 at 1173.347 kb on - strand, within SM_b20946 at 1173.461 kb on + strand, within SM_b20946 at 1173.501 kb on - strand at 1173.555 kb on + strand at 1173.556 kb on - strand at 1173.596 kb on - strand at 1173.606 kb on + strand at 1173.736 kb on + strand at 1173.741 kb on + strand at 1173.741 kb on + strand at 1173.788 kb on - strand at 1173.805 kb on - strand at 1173.810 kb on + strand at 1173.813 kb on + strand at 1173.999 kb on + strand at 1173.999 kb on + strand at 1174.000 kb on - strand at 1174.046 kb on + strand at 1174.047 kb on - strand at 1174.047 kb on - strand at 1174.047 kb on - strand at 1174.179 kb on + strand at 1174.180 kb on - strand at 1174.180 kb on - strand at 1174.180 kb on - strand at 1174.200 kb on - strand at 1174.232 kb on + strand at 1174.235 kb on + strand at 1174.237 kb on + strand at 1174.237 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 1,172,765 - -1.9 1,172,945 - SM_b20946 0.13 -0.3 1,172,945 - SM_b20946 0.13 -1.9 1,172,945 - SM_b20946 0.13 -0.3 1,172,974 + SM_b20946 0.17 +0.1 1,173,037 + SM_b20946 0.26 -0.5 1,173,158 + SM_b20946 0.44 -0.7 1,173,230 - SM_b20946 0.54 +0.4 1,173,291 - SM_b20946 0.63 -0.2 1,173,291 - SM_b20946 0.63 +0.7 1,173,346 + SM_b20946 0.72 +0.4 1,173,347 - SM_b20946 0.72 -1.3 1,173,347 - SM_b20946 0.72 -3.6 1,173,461 + SM_b20946 0.88 -0.9 1,173,501 - +0.3 1,173,555 + -0.8 1,173,556 - +0.1 1,173,596 - -0.9 1,173,606 + +0.3 1,173,736 + +0.0 1,173,741 + +0.3 1,173,741 + -0.9 1,173,788 - -0.9 1,173,805 - -0.9 1,173,810 + -0.8 1,173,813 + +0.1 1,173,999 + +0.8 1,173,999 + -3.2 1,174,000 - +1.7 1,174,046 + -0.1 1,174,047 - +0.7 1,174,047 - +0.2 1,174,047 - +1.1 1,174,179 + -1.2 1,174,180 - -0.2 1,174,180 - -0.9 1,174,180 - +2.9 1,174,200 - +0.4 1,174,232 + +0.4 1,174,235 + +0.5 1,174,237 + -0.5 1,174,237 + -0.4
Or see this region's nucleotide sequence