Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20805 and SM_b20806 are separated by 127 nucleotides SM_b20806 and SM_b20807 are separated by 132 nucleotides
SM_b20805: SM_b20805 - glycosyltransferase, at 590,027 to 590,932
_b20805
SM_b20806: SM_b20806 - hypothetical protein, at 591,060 to 591,749
_b20806
SM_b20807: SM_b20807 - hypothetical protein, at 591,882 to 593,519
_b20807
Position (kb) 591
592 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 590.082 kb on + strand at 590.083 kb on - strand at 590.242 kb on + strand, within SM_b20805 at 590.365 kb on - strand, within SM_b20805 at 590.388 kb on + strand, within SM_b20805 at 590.388 kb on + strand, within SM_b20805 at 590.431 kb on + strand, within SM_b20805 at 590.432 kb on - strand, within SM_b20805 at 590.432 kb on - strand, within SM_b20805 at 590.432 kb on - strand, within SM_b20805 at 590.457 kb on + strand, within SM_b20805 at 590.458 kb on - strand, within SM_b20805 at 590.508 kb on + strand, within SM_b20805 at 590.534 kb on + strand, within SM_b20805 at 590.579 kb on + strand, within SM_b20805 at 590.747 kb on + strand, within SM_b20805 at 590.751 kb on - strand, within SM_b20805 at 590.751 kb on - strand, within SM_b20805 at 590.751 kb on - strand, within SM_b20805 at 590.765 kb on - strand, within SM_b20805 at 590.765 kb on - strand, within SM_b20805 at 590.830 kb on + strand, within SM_b20805 at 590.831 kb on - strand, within SM_b20805 at 590.833 kb on - strand, within SM_b20805 at 590.904 kb on - strand at 590.953 kb on + strand at 590.963 kb on + strand at 590.963 kb on + strand at 590.964 kb on - strand at 591.011 kb on + strand at 591.012 kb on - strand at 591.078 kb on + strand at 591.079 kb on - strand at 591.079 kb on - strand at 591.134 kb on + strand, within SM_b20806 at 591.148 kb on + strand, within SM_b20806 at 591.199 kb on + strand, within SM_b20806 at 591.207 kb on + strand, within SM_b20806 at 591.258 kb on + strand, within SM_b20806 at 591.540 kb on + strand, within SM_b20806 at 591.540 kb on + strand, within SM_b20806 at 591.541 kb on - strand, within SM_b20806 at 591.544 kb on + strand, within SM_b20806 at 591.634 kb on - strand, within SM_b20806 at 591.647 kb on + strand, within SM_b20806 at 591.727 kb on + strand at 591.728 kb on - strand at 591.731 kb on + strand at 591.804 kb on + strand at 591.967 kb on + strand at 591.967 kb on + strand at 591.967 kb on + strand at 591.967 kb on + strand at 591.967 kb on + strand at 592.062 kb on + strand, within SM_b20807 at 592.062 kb on + strand, within SM_b20807 at 592.070 kb on - strand, within SM_b20807 at 592.070 kb on - strand, within SM_b20807 at 592.070 kb on - strand, within SM_b20807 at 592.164 kb on + strand, within SM_b20807 at 592.164 kb on + strand, within SM_b20807 at 592.164 kb on + strand, within SM_b20807 at 592.165 kb on - strand, within SM_b20807 at 592.200 kb on + strand, within SM_b20807 at 592.232 kb on - strand, within SM_b20807 at 592.238 kb on + strand, within SM_b20807 at 592.406 kb on - strand, within SM_b20807 at 592.494 kb on + strand, within SM_b20807 at 592.494 kb on + strand, within SM_b20807 at 592.495 kb on - strand, within SM_b20807 at 592.539 kb on + strand, within SM_b20807 at 592.539 kb on + strand, within SM_b20807 at 592.540 kb on - strand, within SM_b20807 at 592.551 kb on - strand, within SM_b20807 at 592.605 kb on + strand, within SM_b20807 at 592.606 kb on - strand, within SM_b20807 at 592.606 kb on - strand, within SM_b20807 at 592.671 kb on + strand, within SM_b20807 at 592.685 kb on + strand, within SM_b20807 at 592.686 kb on - strand, within SM_b20807 at 592.740 kb on - strand, within SM_b20807
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 590,082 + +1.7 590,083 - -1.6 590,242 + SM_b20805 0.24 -0.8 590,365 - SM_b20805 0.37 -0.9 590,388 + SM_b20805 0.40 +1.2 590,388 + SM_b20805 0.40 +0.0 590,431 + SM_b20805 0.45 +0.5 590,432 - SM_b20805 0.45 -0.2 590,432 - SM_b20805 0.45 -3.2 590,432 - SM_b20805 0.45 -3.1 590,457 + SM_b20805 0.47 +0.1 590,458 - SM_b20805 0.48 -0.9 590,508 + SM_b20805 0.53 -1.6 590,534 + SM_b20805 0.56 -1.0 590,579 + SM_b20805 0.61 -0.2 590,747 + SM_b20805 0.79 +2.6 590,751 - SM_b20805 0.80 -0.3 590,751 - SM_b20805 0.80 -3.8 590,751 - SM_b20805 0.80 +0.8 590,765 - SM_b20805 0.81 -1.2 590,765 - SM_b20805 0.81 +0.8 590,830 + SM_b20805 0.89 -2.4 590,831 - SM_b20805 0.89 +0.5 590,833 - SM_b20805 0.89 -0.9 590,904 - +0.1 590,953 + +0.3 590,963 + -1.5 590,963 + +1.2 590,964 - -0.9 591,011 + -3.0 591,012 - +0.0 591,078 + +1.3 591,079 - -1.9 591,079 - +2.1 591,134 + SM_b20806 0.11 +2.5 591,148 + SM_b20806 0.13 -1.2 591,199 + SM_b20806 0.20 -0.9 591,207 + SM_b20806 0.21 -0.5 591,258 + SM_b20806 0.29 -2.9 591,540 + SM_b20806 0.70 +0.5 591,540 + SM_b20806 0.70 -2.5 591,541 - SM_b20806 0.70 -0.9 591,544 + SM_b20806 0.70 -0.9 591,634 - SM_b20806 0.83 -1.6 591,647 + SM_b20806 0.85 -1.1 591,727 + +0.3 591,728 - -3.1 591,731 + -0.9 591,804 + -2.5 591,967 + +0.1 591,967 + -0.9 591,967 + +0.9 591,967 + +2.1 591,967 + +0.5 592,062 + SM_b20807 0.11 +0.5 592,062 + SM_b20807 0.11 +0.5 592,070 - SM_b20807 0.11 -1.1 592,070 - SM_b20807 0.11 +0.1 592,070 - SM_b20807 0.11 -0.6 592,164 + SM_b20807 0.17 +2.6 592,164 + SM_b20807 0.17 +1.6 592,164 + SM_b20807 0.17 -0.4 592,165 - SM_b20807 0.17 +0.8 592,200 + SM_b20807 0.19 +0.5 592,232 - SM_b20807 0.21 +1.0 592,238 + SM_b20807 0.22 -3.4 592,406 - SM_b20807 0.32 -0.0 592,494 + SM_b20807 0.37 +1.1 592,494 + SM_b20807 0.37 +0.1 592,495 - SM_b20807 0.37 -0.4 592,539 + SM_b20807 0.40 +0.8 592,539 + SM_b20807 0.40 +0.3 592,540 - SM_b20807 0.40 -0.0 592,551 - SM_b20807 0.41 -0.4 592,605 + SM_b20807 0.44 -1.0 592,606 - SM_b20807 0.44 -0.5 592,606 - SM_b20807 0.44 +1.5 592,671 + SM_b20807 0.48 +1.3 592,685 + SM_b20807 0.49 -0.6 592,686 - SM_b20807 0.49 -0.3 592,740 - SM_b20807 0.52 -0.4
Or see this region's nucleotide sequence