Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20552 and SM_b20553 are separated by 20 nucleotides SM_b20553 and SM_b20554 are separated by 357 nucleotides SM_b20554 and SM_b20555 are separated by 3 nucleotides SM_b20555 and SM_b20556 are separated by 456 nucleotides
SM_b20552: SM_b20552 - hypothetical protein, at 578,150 to 578,881
_b20552
SM_b20553: SM_b20553 - hypothetical protein, at 578,902 to 579,096
_b20553
SM_b20554: SM_b20554 - hypothetical protein, at 579,454 to 579,963
_b20554
SM_b20555: SM_b20555 - hypothetical protein, at 579,967 to 580,188
_b20555
SM_b20556: SM_b20556 - hypothetical protein, at 580,645 to 581,325
_b20556
Position (kb) 579
580 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 578.537 kb on + strand, within SM_b20552 at 578.599 kb on + strand, within SM_b20552 at 578.600 kb on - strand, within SM_b20552 at 578.645 kb on + strand, within SM_b20552 at 578.645 kb on + strand, within SM_b20552 at 578.706 kb on + strand, within SM_b20552 at 578.706 kb on + strand, within SM_b20552 at 578.735 kb on + strand, within SM_b20552 at 578.779 kb on - strand, within SM_b20552 at 578.981 kb on + strand, within SM_b20553 at 579.010 kb on - strand, within SM_b20553 at 579.056 kb on + strand, within SM_b20553 at 579.091 kb on + strand at 579.091 kb on + strand at 579.092 kb on - strand at 579.092 kb on - strand at 579.092 kb on - strand at 579.106 kb on + strand at 579.106 kb on + strand at 579.217 kb on + strand at 579.217 kb on + strand at 579.217 kb on + strand at 579.218 kb on - strand at 579.219 kb on + strand at 579.220 kb on - strand at 579.220 kb on - strand at 579.220 kb on - strand at 579.220 kb on - strand at 579.248 kb on + strand at 579.249 kb on - strand at 579.256 kb on - strand at 579.256 kb on - strand at 579.291 kb on - strand at 579.291 kb on - strand at 579.291 kb on - strand at 579.291 kb on - strand at 579.291 kb on - strand at 579.297 kb on + strand at 579.297 kb on + strand at 579.297 kb on + strand at 579.297 kb on + strand at 579.298 kb on - strand at 579.298 kb on - strand at 579.436 kb on + strand at 579.437 kb on - strand at 579.467 kb on + strand at 579.497 kb on + strand at 579.497 kb on + strand at 579.498 kb on - strand at 579.509 kb on - strand, within SM_b20554 at 579.509 kb on - strand, within SM_b20554 at 579.619 kb on + strand, within SM_b20554 at 579.619 kb on + strand, within SM_b20554 at 579.619 kb on + strand at 579.620 kb on - strand, within SM_b20554 at 579.620 kb on - strand, within SM_b20554 at 579.620 kb on - strand, within SM_b20554 at 579.627 kb on + strand, within SM_b20554 at 579.628 kb on - strand, within SM_b20554 at 579.628 kb on - strand, within SM_b20554 at 579.696 kb on - strand, within SM_b20554 at 579.912 kb on + strand, within SM_b20554 at 579.913 kb on - strand at 579.913 kb on - strand at 580.072 kb on + strand, within SM_b20555 at 580.073 kb on - strand, within SM_b20555 at 580.077 kb on + strand, within SM_b20555 at 580.077 kb on + strand, within SM_b20555 at 580.078 kb on - strand, within SM_b20555 at 580.078 kb on - strand, within SM_b20555 at 580.227 kb on + strand at 580.227 kb on + strand at 580.228 kb on - strand at 580.228 kb on - strand at 580.262 kb on - strand at 580.348 kb on + strand at 580.349 kb on - strand at 580.385 kb on + strand at 580.539 kb on + strand at 580.555 kb on - strand at 580.650 kb on + strand at 580.650 kb on + strand at 580.683 kb on + strand at 580.683 kb on + strand at 580.683 kb on + strand at 580.746 kb on + strand, within SM_b20556
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 578,537 + SM_b20552 0.53 +0.8 578,599 + SM_b20552 0.61 -0.7 578,600 - SM_b20552 0.61 +0.3 578,645 + SM_b20552 0.68 -0.0 578,645 + SM_b20552 0.68 +1.6 578,706 + SM_b20552 0.76 +0.4 578,706 + SM_b20552 0.76 -0.1 578,735 + SM_b20552 0.80 +1.6 578,779 - SM_b20552 0.86 -0.5 578,981 + SM_b20553 0.41 +0.1 579,010 - SM_b20553 0.55 +0.3 579,056 + SM_b20553 0.79 -0.4 579,091 + -1.3 579,091 + +0.2 579,092 - -0.6 579,092 - +2.8 579,092 - +4.9 579,106 + +0.2 579,106 + -4.0 579,217 + -1.2 579,217 + +0.1 579,217 + -2.2 579,218 - -0.7 579,219 + -0.9 579,220 - -1.3 579,220 - -0.8 579,220 - +0.0 579,220 - +0.5 579,248 + -1.9 579,249 - -0.7 579,256 - -0.2 579,256 - +0.8 579,291 - +0.8 579,291 - -0.5 579,291 - +0.3 579,291 - +1.1 579,291 - -0.1 579,297 + +1.1 579,297 + -0.1 579,297 + +0.0 579,297 + +0.2 579,298 - +0.6 579,298 - +0.9 579,436 + -2.2 579,437 - +0.0 579,467 + +1.3 579,497 + -0.6 579,497 + +0.2 579,498 - -1.1 579,509 - SM_b20554 0.11 -1.1 579,509 - SM_b20554 0.11 +0.5 579,619 + SM_b20554 0.32 +1.1 579,619 + SM_b20554 0.32 -1.9 579,619 + -1.2 579,620 - SM_b20554 0.33 +0.6 579,620 - SM_b20554 0.33 -0.9 579,620 - SM_b20554 0.33 +0.9 579,627 + SM_b20554 0.34 -1.6 579,628 - SM_b20554 0.34 +0.2 579,628 - SM_b20554 0.34 -0.1 579,696 - SM_b20554 0.47 +1.9 579,912 + SM_b20554 0.90 +0.7 579,913 - +0.1 579,913 - +2.5 580,072 + SM_b20555 0.47 -1.0 580,073 - SM_b20555 0.48 -0.2 580,077 + SM_b20555 0.50 -0.5 580,077 + SM_b20555 0.50 +1.8 580,078 - SM_b20555 0.50 +0.1 580,078 - SM_b20555 0.50 +0.9 580,227 + +0.1 580,227 + +0.8 580,228 - +0.2 580,228 - -0.3 580,262 - -0.2 580,348 + -0.6 580,349 - +2.1 580,385 + +1.5 580,539 + -0.6 580,555 - -0.7 580,650 + -0.9 580,650 + +0.6 580,683 + -0.2 580,683 + +0.5 580,683 + +0.0 580,746 + SM_b20556 0.15 -1.3
Or see this region's nucleotide sequence