Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20482

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20481 and SM_b20482 are separated by 1 nucleotidesSM_b20482 and SM_b20483 are separated by 7 nucleotides SM_b20481: SM_b20481 - asparagine synthetase (glutamine amidotransferase) protein, at 494,919 to 496,694 _b20481 SM_b20482: SM_b20482 - hypothetical protein, at 496,696 to 498,483 _b20482 SM_b20483: SM_b20483 - catabolite repressor protein, at 498,491 to 499,561 _b20483 Position (kb) 496 497 498 499Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 495.886 kb on + strand, within SM_b20481at 495.961 kb on - strand, within SM_b20481at 495.979 kb on - strand, within SM_b20481at 495.979 kb on - strand, within SM_b20481at 495.979 kb on - strand, within SM_b20481at 496.018 kb on + strand, within SM_b20481at 496.019 kb on - strand, within SM_b20481at 496.229 kb on + strand, within SM_b20481at 496.230 kb on - strand, within SM_b20481at 496.268 kb on + strand, within SM_b20481at 496.268 kb on + strand, within SM_b20481at 496.269 kb on - strand, within SM_b20481at 496.269 kb on - strand, within SM_b20481at 496.304 kb on + strand, within SM_b20481at 496.304 kb on + strand, within SM_b20481at 496.305 kb on - strand, within SM_b20481at 496.476 kb on + strand, within SM_b20481at 496.477 kb on - strand, within SM_b20481at 496.501 kb on - strand, within SM_b20481at 496.501 kb on - strand, within SM_b20481at 496.584 kb on + strandat 496.584 kb on + strandat 496.585 kb on - strandat 496.585 kb on - strandat 496.690 kb on + strandat 496.692 kb on + strandat 496.692 kb on + strandat 496.693 kb on - strandat 496.693 kb on - strandat 496.693 kb on - strandat 496.693 kb on - strandat 496.785 kb on + strandat 496.957 kb on + strand, within SM_b20482at 496.958 kb on - strand, within SM_b20482at 496.962 kb on - strand, within SM_b20482at 497.027 kb on - strand, within SM_b20482at 497.048 kb on - strand, within SM_b20482at 497.048 kb on - strand, within SM_b20482at 497.131 kb on + strand, within SM_b20482at 497.131 kb on + strand, within SM_b20482at 497.131 kb on + strand, within SM_b20482at 497.132 kb on - strand, within SM_b20482at 497.402 kb on - strand, within SM_b20482at 497.402 kb on - strand, within SM_b20482at 497.402 kb on - strand, within SM_b20482at 497.430 kb on + strand, within SM_b20482at 497.430 kb on + strand, within SM_b20482at 497.431 kb on - strand, within SM_b20482at 497.431 kb on - strand, within SM_b20482at 497.431 kb on - strand, within SM_b20482at 497.431 kb on - strand, within SM_b20482at 497.542 kb on + strand, within SM_b20482at 497.543 kb on - strand, within SM_b20482at 497.820 kb on - strand, within SM_b20482at 498.003 kb on + strand, within SM_b20482at 498.003 kb on + strand, within SM_b20482at 498.003 kb on + strand, within SM_b20482at 498.003 kb on + strand, within SM_b20482at 498.004 kb on - strand, within SM_b20482at 498.004 kb on - strand, within SM_b20482at 498.004 kb on - strand, within SM_b20482at 498.188 kb on + strand, within SM_b20482at 498.446 kb on + strandat 498.446 kb on + strandat 498.447 kb on - strandat 498.482 kb on - strandat 498.581 kb on + strandat 498.696 kb on + strand, within SM_b20483at 498.696 kb on + strand, within SM_b20483at 498.696 kb on + strand, within SM_b20483at 498.697 kb on - strand, within SM_b20483at 498.826 kb on - strand, within SM_b20483at 498.878 kb on + strand, within SM_b20483at 498.878 kb on + strand, within SM_b20483at 498.879 kb on - strand, within SM_b20483at 498.936 kb on - strand, within SM_b20483at 498.936 kb on - strand, within SM_b20483at 498.978 kb on + strand, within SM_b20483at 499.108 kb on + strand, within SM_b20483at 499.109 kb on - strandat 499.109 kb on - strand, within SM_b20483at 499.115 kb on + strand, within SM_b20483at 499.115 kb on + strand, within SM_b20483at 499.116 kb on - strand, within SM_b20483at 499.172 kb on - strand, within SM_b20483at 499.191 kb on + strand, within SM_b20483at 499.192 kb on - strand, within SM_b20483at 499.274 kb on - strand, within SM_b20483at 499.274 kb on - strand, within SM_b20483at 499.328 kb on + strand, within SM_b20483at 499.370 kb on + strand, within SM_b20483at 499.399 kb on - strand, within SM_b20483at 499.476 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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495,886 + SM_b20481 0.54 +0.5
495,961 - SM_b20481 0.59 -2.1
495,979 - SM_b20481 0.60 -0.1
495,979 - SM_b20481 0.60 +0.0
495,979 - SM_b20481 0.60 -0.7
496,018 + SM_b20481 0.62 +0.1
496,019 - SM_b20481 0.62 +0.2
496,229 + SM_b20481 0.74 -0.7
496,230 - SM_b20481 0.74 -0.3
496,268 + SM_b20481 0.76 -2.5
496,268 + SM_b20481 0.76 -0.1
496,269 - SM_b20481 0.76 -0.0
496,269 - SM_b20481 0.76 +0.1
496,304 + SM_b20481 0.78 -0.3
496,304 + SM_b20481 0.78 -1.8
496,305 - SM_b20481 0.78 -0.8
496,476 + SM_b20481 0.88 +1.7
496,477 - SM_b20481 0.88 +0.9
496,501 - SM_b20481 0.89 +0.6
496,501 - SM_b20481 0.89 +0.5
496,584 + -0.1
496,584 + -2.7
496,585 - +0.6
496,585 - +0.5
496,690 + -0.4
496,692 + -0.9
496,692 + +1.1
496,693 - +0.9
496,693 - -0.6
496,693 - -2.6
496,693 - -0.4
496,785 + +1.5
496,957 + SM_b20482 0.15 +0.7
496,958 - SM_b20482 0.15 -0.9
496,962 - SM_b20482 0.15 +1.1
497,027 - SM_b20482 0.19 -1.8
497,048 - SM_b20482 0.20 -0.7
497,048 - SM_b20482 0.20 -0.2
497,131 + SM_b20482 0.24 -0.0
497,131 + SM_b20482 0.24 +1.3
497,131 + SM_b20482 0.24 -0.5
497,132 - SM_b20482 0.24 -0.8
497,402 - SM_b20482 0.39 +0.3
497,402 - SM_b20482 0.39 -0.0
497,402 - SM_b20482 0.39 -3.6
497,430 + SM_b20482 0.41 -1.1
497,430 + SM_b20482 0.41 -2.1
497,431 - SM_b20482 0.41 +0.8
497,431 - SM_b20482 0.41 -2.6
497,431 - SM_b20482 0.41 +2.2
497,431 - SM_b20482 0.41 +1.3
497,542 + SM_b20482 0.47 +0.0
497,543 - SM_b20482 0.47 -2.4
497,820 - SM_b20482 0.63 +0.0
498,003 + SM_b20482 0.73 +0.3
498,003 + SM_b20482 0.73 +0.1
498,003 + SM_b20482 0.73 -2.5
498,003 + SM_b20482 0.73 +0.3
498,004 - SM_b20482 0.73 +0.9
498,004 - SM_b20482 0.73 -0.8
498,004 - SM_b20482 0.73 +0.7
498,188 + SM_b20482 0.83 -0.5
498,446 + +0.1
498,446 + +0.0
498,447 - +2.0
498,482 - +1.4
498,581 + +0.5
498,696 + SM_b20483 0.19 -1.7
498,696 + SM_b20483 0.19 -1.9
498,696 + SM_b20483 0.19 -2.0
498,697 - SM_b20483 0.19 -0.2
498,826 - SM_b20483 0.31 -1.2
498,878 + SM_b20483 0.36 -1.7
498,878 + SM_b20483 0.36 +0.6
498,879 - SM_b20483 0.36 -0.1
498,936 - SM_b20483 0.42 +0.4
498,936 - SM_b20483 0.42 +0.2
498,978 + SM_b20483 0.45 +0.5
499,108 + SM_b20483 0.58 +2.1
499,109 - -0.5
499,109 - SM_b20483 0.58 -0.2
499,115 + SM_b20483 0.58 -0.9
499,115 + SM_b20483 0.58 +0.6
499,116 - SM_b20483 0.58 -4.1
499,172 - SM_b20483 0.64 -0.7
499,191 + SM_b20483 0.65 -0.0
499,192 - SM_b20483 0.65 +0.4
499,274 - SM_b20483 0.73 -0.5
499,274 - SM_b20483 0.73 -0.8
499,328 + SM_b20483 0.78 +0.2
499,370 + SM_b20483 0.82 -0.1
499,399 - SM_b20483 0.85 -1.3
499,476 - -0.5

Or see this region's nucleotide sequence