Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20462 and SM_b20463 overlap by 1 nucleotides SM_b20463 and SM_b20464 are separated by 188 nucleotides SM_b20464 and SM_b20465 are separated by 165 nucleotides
SM_b20462: SM_b20462 - cellulase H protein, at 474,922 to 475,899
_b20462
SM_b20463: SM_b20463 - hypothetical protein, at 475,899 to 476,408
_b20463
SM_b20464: SM_b20464 - hypothetical protein, at 476,597 to 476,899
_b20464
SM_b20465: SM_b20465 - hypothetical protein, at 477,065 to 478,135
_b20465
Position (kb) 476
477 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 475.723 kb on + strand, within SM_b20462 at 475.723 kb on + strand, within SM_b20462 at 475.723 kb on + strand, within SM_b20462 at 475.724 kb on - strand, within SM_b20462 at 475.724 kb on - strand, within SM_b20462 at 475.724 kb on - strand, within SM_b20462 at 475.724 kb on - strand, within SM_b20462 at 475.724 kb on - strand, within SM_b20462 at 475.724 kb on - strand, within SM_b20462 at 475.813 kb on + strand at 475.863 kb on + strand at 475.911 kb on + strand at 475.911 kb on + strand at 475.912 kb on - strand at 475.921 kb on + strand at 475.921 kb on + strand at 475.952 kb on - strand, within SM_b20463 at 476.029 kb on - strand, within SM_b20463 at 476.037 kb on + strand, within SM_b20463 at 476.136 kb on + strand, within SM_b20463 at 476.176 kb on + strand, within SM_b20463 at 476.176 kb on + strand, within SM_b20463 at 476.176 kb on + strand, within SM_b20463 at 476.263 kb on - strand, within SM_b20463 at 476.292 kb on + strand, within SM_b20463 at 476.293 kb on - strand, within SM_b20463 at 476.293 kb on - strand, within SM_b20463 at 476.355 kb on + strand, within SM_b20463 at 476.355 kb on + strand, within SM_b20463 at 476.355 kb on + strand, within SM_b20463 at 476.356 kb on - strand, within SM_b20463 at 476.356 kb on - strand, within SM_b20463 at 476.356 kb on - strand, within SM_b20463 at 476.509 kb on + strand at 476.510 kb on - strand at 476.510 kb on - strand at 476.510 kb on - strand at 476.598 kb on + strand at 476.599 kb on - strand at 476.648 kb on - strand, within SM_b20464 at 476.649 kb on + strand, within SM_b20464 at 476.650 kb on - strand, within SM_b20464 at 476.650 kb on - strand, within SM_b20464 at 476.650 kb on - strand, within SM_b20464 at 476.650 kb on - strand, within SM_b20464 at 476.650 kb on - strand, within SM_b20464 at 477.155 kb on + strand at 477.156 kb on - strand at 477.156 kb on - strand at 477.239 kb on - strand, within SM_b20465 at 477.239 kb on - strand, within SM_b20465 at 477.392 kb on + strand, within SM_b20465 at 477.393 kb on - strand, within SM_b20465 at 477.394 kb on + strand, within SM_b20465 at 477.395 kb on - strand, within SM_b20465 at 477.530 kb on + strand, within SM_b20465 at 477.531 kb on - strand, within SM_b20465 at 477.626 kb on - strand, within SM_b20465 at 477.626 kb on - strand, within SM_b20465 at 477.692 kb on + strand, within SM_b20465 at 477.692 kb on + strand, within SM_b20465 at 477.692 kb on + strand, within SM_b20465 at 477.693 kb on - strand, within SM_b20465 at 477.725 kb on + strand, within SM_b20465 at 477.726 kb on - strand, within SM_b20465 at 477.726 kb on - strand, within SM_b20465 at 477.769 kb on + strand, within SM_b20465 at 477.770 kb on - strand, within SM_b20465
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 475,723 + SM_b20462 0.82 +0.2 475,723 + SM_b20462 0.82 -0.2 475,723 + SM_b20462 0.82 +0.1 475,724 - SM_b20462 0.82 +0.5 475,724 - SM_b20462 0.82 -0.8 475,724 - SM_b20462 0.82 +0.2 475,724 - SM_b20462 0.82 -2.0 475,724 - SM_b20462 0.82 -0.8 475,724 - SM_b20462 0.82 -1.3 475,813 + -1.2 475,863 + +1.0 475,911 + +0.5 475,911 + -0.2 475,912 - +0.4 475,921 + +0.5 475,921 + +1.1 475,952 - SM_b20463 0.10 +3.1 476,029 - SM_b20463 0.25 -1.3 476,037 + SM_b20463 0.27 -1.4 476,136 + SM_b20463 0.46 +0.2 476,176 + SM_b20463 0.54 +2.1 476,176 + SM_b20463 0.54 +0.4 476,176 + SM_b20463 0.54 -0.1 476,263 - SM_b20463 0.71 +1.2 476,292 + SM_b20463 0.77 -0.5 476,293 - SM_b20463 0.77 +1.0 476,293 - SM_b20463 0.77 +0.1 476,355 + SM_b20463 0.89 -2.4 476,355 + SM_b20463 0.89 -1.7 476,355 + SM_b20463 0.89 +1.5 476,356 - SM_b20463 0.90 -1.2 476,356 - SM_b20463 0.90 -0.1 476,356 - SM_b20463 0.90 +0.5 476,509 + +1.1 476,510 - +2.6 476,510 - +0.1 476,510 - +1.3 476,598 + -2.4 476,599 - +0.2 476,648 - SM_b20464 0.17 -1.7 476,649 + SM_b20464 0.17 -0.9 476,650 - SM_b20464 0.17 +0.5 476,650 - SM_b20464 0.17 -1.5 476,650 - SM_b20464 0.17 -2.0 476,650 - SM_b20464 0.17 -0.8 476,650 - SM_b20464 0.17 -0.0 477,155 + +1.2 477,156 - +0.5 477,156 - -0.3 477,239 - SM_b20465 0.16 +0.8 477,239 - SM_b20465 0.16 -0.1 477,392 + SM_b20465 0.31 -0.3 477,393 - SM_b20465 0.31 -0.2 477,394 + SM_b20465 0.31 +2.3 477,395 - SM_b20465 0.31 +0.9 477,530 + SM_b20465 0.43 +1.3 477,531 - SM_b20465 0.44 -0.0 477,626 - SM_b20465 0.52 -2.3 477,626 - SM_b20465 0.52 +0.4 477,692 + SM_b20465 0.59 -0.9 477,692 + SM_b20465 0.59 -1.9 477,692 + SM_b20465 0.59 -0.1 477,693 - SM_b20465 0.59 -0.1 477,725 + SM_b20465 0.62 -0.8 477,726 - SM_b20465 0.62 -0.8 477,726 - SM_b20465 0.62 +0.2 477,769 + SM_b20465 0.66 +0.2 477,770 - SM_b20465 0.66 +0.9
Or see this region's nucleotide sequence