Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20372 and SM_b20373 are separated by 11 nucleotides SM_b20373 and SM_b20374 are separated by 79 nucleotides SM_b20374 and SM_b20375 are separated by 20 nucleotides SM_b20375 and SM_b20376 are separated by 203 nucleotides
SM_b20372: SM_b20372 - hypothetical protein, at 383,818 to 385,095
_b20372
SM_b20373: SM_b20373 - TRAP dicarboxylate transporter, at 385,107 to 385,574
_b20373
SM_b20374: SM_b20374 - substrate-binding protein, at 385,654 to 386,646
_b20374
SM_b20375: SM_b20375 - transcriptional regulator, at 386,667 to 387,437
_b20375
SM_b20376: SM_b20376 - hypothetical protein, at 387,641 to 388,021
_b20376
Position (kb) 385
386
387 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 384.853 kb on - strand, within SM_b20372 at 384.956 kb on + strand, within SM_b20372 at 384.956 kb on + strand, within SM_b20372 at 384.957 kb on - strand, within SM_b20372 at 384.957 kb on - strand, within SM_b20372 at 385.003 kb on + strand at 385.003 kb on + strand at 385.003 kb on + strand at 385.004 kb on - strand at 385.004 kb on - strand at 385.034 kb on + strand at 385.259 kb on + strand, within SM_b20373 at 385.380 kb on - strand, within SM_b20373 at 385.593 kb on + strand at 385.594 kb on - strand at 385.655 kb on + strand at 386.205 kb on - strand, within SM_b20374 at 386.315 kb on + strand, within SM_b20374 at 386.517 kb on - strand, within SM_b20374 at 386.556 kb on - strand at 386.724 kb on + strand at 386.724 kb on + strand at 386.724 kb on + strand at 386.725 kb on - strand at 386.725 kb on - strand at 386.725 kb on - strand at 386.725 kb on - strand at 386.725 kb on - strand at 386.725 kb on - strand at 386.725 kb on - strand at 386.728 kb on + strand at 386.728 kb on + strand at 386.729 kb on - strand at 386.845 kb on + strand, within SM_b20375 at 386.927 kb on - strand, within SM_b20375
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 384,853 - SM_b20372 0.81 -1.1 384,956 + SM_b20372 0.89 +0.8 384,956 + SM_b20372 0.89 -0.2 384,957 - SM_b20372 0.89 +0.0 384,957 - SM_b20372 0.89 -1.3 385,003 + +0.5 385,003 + -0.5 385,003 + -1.5 385,004 - -0.8 385,004 - -0.2 385,034 + +1.4 385,259 + SM_b20373 0.32 -0.6 385,380 - SM_b20373 0.58 -0.2 385,593 + -0.1 385,594 - -1.8 385,655 + +0.8 386,205 - SM_b20374 0.55 -0.8 386,315 + SM_b20374 0.67 -1.3 386,517 - SM_b20374 0.87 -0.4 386,556 - +1.4 386,724 + +0.4 386,724 + -0.5 386,724 + +0.0 386,725 - -0.9 386,725 - +0.7 386,725 - -0.3 386,725 - +1.0 386,725 - -3.2 386,725 - +0.6 386,725 - +0.0 386,728 + -1.7 386,728 + -0.8 386,729 - +3.2 386,845 + SM_b20375 0.23 +1.5 386,927 - SM_b20375 0.34 +0.2
Or see this region's nucleotide sequence