Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20369

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20368 and SM_b20369 are separated by 5 nucleotidesSM_b20369 and SM_b20370 overlap by 4 nucleotidesSM_b20370 and SM_b20371 are separated by 44 nucleotides SM_b20368: SM_b20368 - hypothetical protein, at 380,366 to 381,379 _b20368 SM_b20369: SM_b20369 - hypothetical protein, at 381,385 to 382,626 _b20369 SM_b20370: SM_b20370 - ATP-binding transport protein, at 382,623 to 383,303 _b20370 SM_b20371: SM_b20371 - ribose-5-phosphate isomerase B, at 383,348 to 383,794 _b20371 Position (kb) 381 382 383Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 380.501 kb on + strand, within SM_b20368at 380.501 kb on + strand, within SM_b20368at 380.502 kb on - strand, within SM_b20368at 380.988 kb on - strand, within SM_b20368at 380.988 kb on - strand, within SM_b20368at 381.044 kb on - strand, within SM_b20368at 381.065 kb on - strand, within SM_b20368at 381.074 kb on + strand, within SM_b20368at 381.075 kb on - strand, within SM_b20368at 381.135 kb on + strand, within SM_b20368at 381.273 kb on + strand, within SM_b20368at 381.273 kb on + strand, within SM_b20368at 381.274 kb on - strand, within SM_b20368at 381.274 kb on - strand, within SM_b20368at 381.309 kb on + strandat 381.310 kb on - strandat 381.892 kb on - strand, within SM_b20369at 382.025 kb on - strand, within SM_b20369at 382.025 kb on - strand, within SM_b20369at 382.025 kb on - strand, within SM_b20369at 382.222 kb on + strand, within SM_b20369at 382.223 kb on - strand, within SM_b20369at 382.432 kb on + strand, within SM_b20369at 382.433 kb on - strand, within SM_b20369at 382.433 kb on - strand, within SM_b20369at 382.516 kb on + strandat 382.524 kb on - strandat 382.524 kb on - strandat 382.610 kb on + strandat 382.611 kb on - strandat 382.658 kb on + strandat 382.658 kb on + strandat 382.659 kb on - strandat 382.659 kb on - strandat 382.659 kb on - strandat 382.659 kb on - strandat 382.660 kb on + strandat 382.660 kb on + strandat 382.661 kb on - strandat 382.661 kb on - strandat 382.661 kb on - strandat 382.773 kb on + strand, within SM_b20370at 382.774 kb on - strand, within SM_b20370at 382.878 kb on - strand, within SM_b20370at 382.878 kb on - strand, within SM_b20370at 383.171 kb on - strand, within SM_b20370at 383.301 kb on + strandat 383.302 kb on - strandat 383.428 kb on - strand, within SM_b20371

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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380,501 + SM_b20368 0.13 -0.5
380,501 + SM_b20368 0.13 +0.0
380,502 - SM_b20368 0.13 -0.2
380,988 - SM_b20368 0.61 -0.1
380,988 - SM_b20368 0.61 -1.7
381,044 - SM_b20368 0.67 +0.6
381,065 - SM_b20368 0.69 -2.1
381,074 + SM_b20368 0.70 +0.2
381,075 - SM_b20368 0.70 +1.5
381,135 + SM_b20368 0.76 -1.0
381,273 + SM_b20368 0.89 -0.1
381,273 + SM_b20368 0.89 +2.7
381,274 - SM_b20368 0.90 +0.5
381,274 - SM_b20368 0.90 -1.5
381,309 + -0.7
381,310 - -2.4
381,892 - SM_b20369 0.41 -0.7
382,025 - SM_b20369 0.52 -0.7
382,025 - SM_b20369 0.52 -0.7
382,025 - SM_b20369 0.52 -2.4
382,222 + SM_b20369 0.67 +0.5
382,223 - SM_b20369 0.67 -0.2
382,432 + SM_b20369 0.84 +1.3
382,433 - SM_b20369 0.84 -2.4
382,433 - SM_b20369 0.84 -2.8
382,516 + -1.0
382,524 - -2.8
382,524 - -0.2
382,610 + +0.9
382,611 - +2.2
382,658 + +0.4
382,658 + -0.1
382,659 - +0.2
382,659 - -0.2
382,659 - +0.5
382,659 - +0.3
382,660 + -0.2
382,660 + -1.7
382,661 - -0.1
382,661 - +0.6
382,661 - +0.2
382,773 + SM_b20370 0.22 -0.1
382,774 - SM_b20370 0.22 -1.4
382,878 - SM_b20370 0.37 +1.5
382,878 - SM_b20370 0.37 +2.2
383,171 - SM_b20370 0.80 +0.2
383,301 + +0.6
383,302 - -0.2
383,428 - SM_b20371 0.18 -1.2

Or see this region's nucleotide sequence