Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20217

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20216 and SM_b20217 are separated by 217 nucleotidesSM_b20217 and SM_b20218 are separated by 170 nucleotides SM_b20216: SM_b20216 - epoxide hydrolase, at 224,114 to 225,160 _b20216 SM_b20217: SM_b20217 - hypothetical protein, at 225,378 to 226,043 _b20217 SM_b20218: SM_b20218 - sensor histidine kinase, at 226,214 to 227,578 _b20218 Position (kb) 225 226 227Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 224.384 kb on + strand, within SM_b20216at 224.385 kb on - strand, within SM_b20216at 224.596 kb on + strand, within SM_b20216at 224.651 kb on + strand, within SM_b20216at 224.757 kb on - strand, within SM_b20216at 224.933 kb on + strand, within SM_b20216at 225.259 kb on + strandat 225.259 kb on + strandat 225.277 kb on + strandat 225.277 kb on + strandat 225.277 kb on + strandat 225.277 kb on + strandat 225.277 kb on + strandat 225.278 kb on - strandat 225.419 kb on + strandat 225.419 kb on + strandat 225.435 kb on - strandat 225.545 kb on + strand, within SM_b20217at 225.624 kb on + strand, within SM_b20217at 225.694 kb on + strand, within SM_b20217at 225.735 kb on + strand, within SM_b20217at 225.736 kb on - strand, within SM_b20217at 225.787 kb on - strand, within SM_b20217at 225.796 kb on - strand, within SM_b20217at 225.796 kb on - strand, within SM_b20217at 226.002 kb on + strandat 226.142 kb on - strandat 226.470 kb on - strand, within SM_b20218at 226.470 kb on - strand, within SM_b20218at 226.676 kb on + strand, within SM_b20218at 226.885 kb on - strand, within SM_b20218

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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224,384 + SM_b20216 0.26 +1.5
224,385 - SM_b20216 0.26 -0.5
224,596 + SM_b20216 0.46 -1.0
224,651 + SM_b20216 0.51 +1.2
224,757 - SM_b20216 0.61 +0.1
224,933 + SM_b20216 0.78 -0.3
225,259 + +2.8
225,259 + -0.5
225,277 + -1.9
225,277 + -1.8
225,277 + -1.7
225,277 + -1.9
225,277 + +0.5
225,278 - -0.7
225,419 + -1.2
225,419 + +0.7
225,435 - -1.0
225,545 + SM_b20217 0.25 -1.2
225,624 + SM_b20217 0.37 -0.7
225,694 + SM_b20217 0.47 -2.9
225,735 + SM_b20217 0.54 -0.4
225,736 - SM_b20217 0.54 -2.5
225,787 - SM_b20217 0.61 -1.9
225,796 - SM_b20217 0.63 -1.9
225,796 - SM_b20217 0.63 +2.5
226,002 + +0.5
226,142 - +0.7
226,470 - SM_b20218 0.19 -1.2
226,470 - SM_b20218 0.19 +1.2
226,676 + SM_b20218 0.34 -1.2
226,885 - SM_b20218 0.49 -1.2

Or see this region's nucleotide sequence