Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20125

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20124 and SM_b20125 are separated by 9 nucleotidesSM_b20125 and SM_b20126 are separated by 8 nucleotides SM_b20124: SM_b20124 - sugar ABC transporter ATP-binding protein, at 135,279 to 136,805 _b20124 SM_b20125: SM_b20125 - sugar ABC transporter permease, at 136,815 to 137,747 _b20125 SM_b20126: SM_b20126 - sugar ABC transporter permease, at 137,756 to 138,853 _b20126 Position (kb) 136 137 138Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 135.821 kb on - strand, within SM_b20124at 135.972 kb on + strand, within SM_b20124at 135.972 kb on + strand, within SM_b20124at 135.973 kb on - strandat 135.973 kb on - strand, within SM_b20124at 136.069 kb on + strand, within SM_b20124at 136.070 kb on - strand, within SM_b20124at 136.140 kb on - strand, within SM_b20124at 136.334 kb on - strand, within SM_b20124at 136.449 kb on + strand, within SM_b20124at 136.449 kb on + strand, within SM_b20124at 136.450 kb on - strand, within SM_b20124at 136.494 kb on + strand, within SM_b20124at 136.494 kb on + strand, within SM_b20124at 136.501 kb on + strand, within SM_b20124at 136.501 kb on + strand, within SM_b20124at 136.501 kb on + strand, within SM_b20124at 136.590 kb on + strand, within SM_b20124at 136.590 kb on + strand, within SM_b20124at 136.590 kb on + strand, within SM_b20124at 136.591 kb on - strand, within SM_b20124at 136.591 kb on - strand, within SM_b20124at 136.828 kb on + strandat 136.875 kb on + strandat 136.875 kb on + strandat 136.876 kb on - strandat 136.876 kb on - strandat 136.876 kb on - strandat 136.924 kb on + strand, within SM_b20125at 136.973 kb on - strand, within SM_b20125at 136.973 kb on - strand, within SM_b20125at 136.973 kb on - strand, within SM_b20125at 136.973 kb on - strand, within SM_b20125at 137.145 kb on - strand, within SM_b20125at 137.249 kb on - strand, within SM_b20125at 137.290 kb on + strand, within SM_b20125at 137.290 kb on + strand, within SM_b20125at 137.291 kb on - strand, within SM_b20125at 137.732 kb on + strandat 137.732 kb on + strandat 137.733 kb on - strandat 137.736 kb on + strandat 137.736 kb on + strandat 137.736 kb on + strandat 137.976 kb on + strand, within SM_b20126at 137.977 kb on - strand, within SM_b20126at 138.147 kb on + strand, within SM_b20126at 138.177 kb on + strand, within SM_b20126at 138.177 kb on + strand, within SM_b20126at 138.177 kb on + strand, within SM_b20126at 138.177 kb on + strand, within SM_b20126at 138.178 kb on - strand, within SM_b20126at 138.325 kb on - strand, within SM_b20126at 138.337 kb on + strand, within SM_b20126at 138.348 kb on + strand, within SM_b20126at 138.348 kb on + strand, within SM_b20126at 138.348 kb on + strand, within SM_b20126at 138.348 kb on + strand, within SM_b20126at 138.349 kb on - strand, within SM_b20126at 138.390 kb on + strand, within SM_b20126at 138.465 kb on + strand, within SM_b20126at 138.465 kb on + strand, within SM_b20126at 138.531 kb on - strand, within SM_b20126

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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135,821 - SM_b20124 0.35 -3.4
135,972 + SM_b20124 0.45 +0.5
135,972 + SM_b20124 0.45 +2.6
135,973 - -0.8
135,973 - SM_b20124 0.45 +0.3
136,069 + SM_b20124 0.52 +1.0
136,070 - SM_b20124 0.52 +0.6
136,140 - SM_b20124 0.56 +0.6
136,334 - SM_b20124 0.69 -0.5
136,449 + SM_b20124 0.77 -1.9
136,449 + SM_b20124 0.77 -0.8
136,450 - SM_b20124 0.77 +0.8
136,494 + SM_b20124 0.80 -1.4
136,494 + SM_b20124 0.80 -0.7
136,501 + SM_b20124 0.80 +0.5
136,501 + SM_b20124 0.80 -1.4
136,501 + SM_b20124 0.80 -0.7
136,590 + SM_b20124 0.86 +0.2
136,590 + SM_b20124 0.86 -0.4
136,590 + SM_b20124 0.86 -2.0
136,591 - SM_b20124 0.86 -0.2
136,591 - SM_b20124 0.86 +0.3
136,828 + +1.8
136,875 + -2.5
136,875 + +0.7
136,876 - -1.2
136,876 - -0.9
136,876 - +0.3
136,924 + SM_b20125 0.12 -0.4
136,973 - SM_b20125 0.17 +0.4
136,973 - SM_b20125 0.17 -0.5
136,973 - SM_b20125 0.17 -1.7
136,973 - SM_b20125 0.17 -0.5
137,145 - SM_b20125 0.35 -1.2
137,249 - SM_b20125 0.47 +0.6
137,290 + SM_b20125 0.51 -1.2
137,290 + SM_b20125 0.51 -2.6
137,291 - SM_b20125 0.51 +0.4
137,732 + +0.4
137,732 + -0.6
137,733 - -1.0
137,736 + -0.1
137,736 + -0.3
137,736 + +1.5
137,976 + SM_b20126 0.20 +1.0
137,977 - SM_b20126 0.20 -0.3
138,147 + SM_b20126 0.36 -0.0
138,177 + SM_b20126 0.38 -0.3
138,177 + SM_b20126 0.38 -0.6
138,177 + SM_b20126 0.38 -0.6
138,177 + SM_b20126 0.38 +0.1
138,178 - SM_b20126 0.38 +1.2
138,325 - SM_b20126 0.52 +0.2
138,337 + SM_b20126 0.53 -2.2
138,348 + SM_b20126 0.54 +0.2
138,348 + SM_b20126 0.54 -3.7
138,348 + SM_b20126 0.54 -0.1
138,348 + SM_b20126 0.54 -2.4
138,349 - SM_b20126 0.54 +2.5
138,390 + SM_b20126 0.58 +0.7
138,465 + SM_b20126 0.65 -2.5
138,465 + SM_b20126 0.65 +0.0
138,531 - SM_b20126 0.71 -0.2

Or see this region's nucleotide sequence