Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20066

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20065 and SM_b20066 are separated by 166 nucleotidesSM_b20066 and SM_b20067 are separated by 3 nucleotidesSM_b20067 and SM_b20068 are separated by 214 nucleotides SM_b20065: SM_b20065 - hypothetical protein, at 73,972 to 74,370 _b20065 SM_b20066: SM_b20066 - hypothetical protein, at 74,537 to 74,722 _b20066 SM_b20067: SM_b20067 - hypothetical protein, at 74,726 to 75,247 _b20067 SM_b20068: SM_b20068 - hypothetical protein, at 75,462 to 75,671 _b20068 Position (kb) 74 75Strain fitness (log2 ratio) -2 -1 0 1 2 3at 73.650 kb on + strandat 73.752 kb on + strandat 73.752 kb on + strandat 73.752 kb on + strandat 73.752 kb on + strandat 73.752 kb on + strandat 73.753 kb on - strandat 73.757 kb on - strandat 73.849 kb on + strandat 73.971 kb on + strandat 73.971 kb on + strandat 73.972 kb on - strandat 73.972 kb on - strandat 74.260 kb on + strandat 74.395 kb on - strandat 74.412 kb on - strandat 74.611 kb on - strandat 74.832 kb on + strand, within SM_b20067at 74.833 kb on - strand, within SM_b20067at 74.833 kb on - strand, within SM_b20067at 74.930 kb on - strand, within SM_b20067at 75.088 kb on + strand, within SM_b20067at 75.089 kb on - strand, within SM_b20067at 75.119 kb on + strand, within SM_b20067at 75.134 kb on - strand, within SM_b20067at 75.134 kb on - strand, within SM_b20067at 75.371 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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73,650 + -0.0
73,752 + +0.3
73,752 + -0.9
73,752 + +3.5
73,752 + -2.2
73,752 + +0.5
73,753 - -0.1
73,757 - +1.3
73,849 + -1.9
73,971 + -0.2
73,971 + -0.5
73,972 - -1.9
73,972 - +0.9
74,260 + -0.6
74,395 - +0.4
74,412 - +1.5
74,611 - -1.9
74,832 + SM_b20067 0.20 -2.0
74,833 - SM_b20067 0.20 +0.0
74,833 - SM_b20067 0.20 -0.3
74,930 - SM_b20067 0.39 -0.2
75,088 + SM_b20067 0.69 -0.8
75,089 - SM_b20067 0.70 +0.3
75,119 + SM_b20067 0.75 +1.2
75,134 - SM_b20067 0.78 +0.0
75,134 - SM_b20067 0.78 +0.1
75,371 + +0.2

Or see this region's nucleotide sequence