Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5871

Experiment: Cobalt chloride 0.6 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_5870 and Pf6N2E2_5871 are separated by 11 nucleotidesPf6N2E2_5871 and Pf6N2E2_5872 are separated by 248 nucleotides Pf6N2E2_5870 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41), at 6,689,489 to 6,690,709 _5870 Pf6N2E2_5871 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form (EC 4.2.1.59), at 6,690,721 to 6,691,236 _5871 Pf6N2E2_5872 - Sensor histidine kinase/response regulator, at 6,691,485 to 6,693,386 _5872 Position (kb) 6690 6691 6692Strain fitness (log2 ratio) -2 -1 0 1 2at 6691.374 kb on - strandat 6691.374 kb on - strandat 6691.374 kb on - strandat 6691.430 kb on - strandat 6691.486 kb on + strandat 6691.486 kb on + strandat 6691.486 kb on + strandat 6691.487 kb on - strandat 6691.487 kb on - strandat 6691.487 kb on - strandat 6691.547 kb on - strandat 6691.547 kb on - strandat 6691.734 kb on + strand, within Pf6N2E2_5872at 6691.734 kb on + strand, within Pf6N2E2_5872at 6691.734 kb on + strand, within Pf6N2E2_5872at 6691.734 kb on + strand, within Pf6N2E2_5872at 6691.735 kb on - strand, within Pf6N2E2_5872at 6691.836 kb on + strand, within Pf6N2E2_5872at 6691.836 kb on + strand, within Pf6N2E2_5872at 6691.836 kb on + strand, within Pf6N2E2_5872at 6691.837 kb on - strand, within Pf6N2E2_5872at 6691.837 kb on - strand, within Pf6N2E2_5872at 6691.837 kb on - strand, within Pf6N2E2_5872at 6691.837 kb on - strand, within Pf6N2E2_5872at 6691.837 kb on - strand, within Pf6N2E2_5872at 6691.837 kb on - strand, within Pf6N2E2_5872at 6691.837 kb on - strand, within Pf6N2E2_5872at 6691.837 kb on - strand, within Pf6N2E2_5872at 6691.837 kb on - strand, within Pf6N2E2_5872

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
remove
6,691,374 - +0.6
6,691,374 - -0.6
6,691,374 - +0.9
6,691,430 - +0.0
6,691,486 + -1.0
6,691,486 + -0.4
6,691,486 + -2.3
6,691,487 - -0.4
6,691,487 - -0.4
6,691,487 - -0.0
6,691,547 - +0.9
6,691,547 - -0.4
6,691,734 + Pf6N2E2_5872 0.13 +0.0
6,691,734 + Pf6N2E2_5872 0.13 -0.7
6,691,734 + Pf6N2E2_5872 0.13 -1.9
6,691,734 + Pf6N2E2_5872 0.13 +0.9
6,691,735 - Pf6N2E2_5872 0.13 -1.1
6,691,836 + Pf6N2E2_5872 0.18 +0.8
6,691,836 + Pf6N2E2_5872 0.18 -0.4
6,691,836 + Pf6N2E2_5872 0.18 -0.9
6,691,837 - Pf6N2E2_5872 0.19 -1.5
6,691,837 - Pf6N2E2_5872 0.19 +0.0
6,691,837 - Pf6N2E2_5872 0.19 +0.5
6,691,837 - Pf6N2E2_5872 0.19 +0.2
6,691,837 - Pf6N2E2_5872 0.19 -0.3
6,691,837 - Pf6N2E2_5872 0.19 +1.9
6,691,837 - Pf6N2E2_5872 0.19 -0.2
6,691,837 - Pf6N2E2_5872 0.19 -0.5
6,691,837 - Pf6N2E2_5872 0.19 +0.1

Or see this region's nucleotide sequence