Experiment: Cobalt chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5868 and Pf6N2E2_5869 are separated by 184 nucleotides Pf6N2E2_5869 and Pf6N2E2_5870 are separated by 89 nucleotides Pf6N2E2_5870 and Pf6N2E2_5871 are separated by 11 nucleotides Pf6N2E2_5871 and Pf6N2E2_5872 are separated by 248 nucleotides
Pf6N2E2_5868 - 5-oxo-L-prolinase, putative, at 6,687,740 to 6,688,750
_5868
Pf6N2E2_5869 - Helicase subunit of the DNA excision repair complex, at 6,688,935 to 6,689,399
_5869
Pf6N2E2_5870 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41), at 6,689,489 to 6,690,709
_5870
Pf6N2E2_5871 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form (EC 4.2.1.59), at 6,690,721 to 6,691,236
_5871
Pf6N2E2_5872 - Sensor histidine kinase/response regulator, at 6,691,485 to 6,693,386
_5872
Position (kb)
6689
6690
6691 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6688.493 kb on + strand, within Pf6N2E2_5868 at 6688.493 kb on + strand, within Pf6N2E2_5868 at 6688.494 kb on - strand, within Pf6N2E2_5868 at 6688.494 kb on - strand, within Pf6N2E2_5868 at 6688.497 kb on + strand, within Pf6N2E2_5868 at 6688.497 kb on + strand, within Pf6N2E2_5868 at 6688.497 kb on + strand, within Pf6N2E2_5868 at 6688.497 kb on + strand, within Pf6N2E2_5868 at 6688.497 kb on + strand, within Pf6N2E2_5868 at 6688.497 kb on + strand, within Pf6N2E2_5868 at 6688.497 kb on + strand, within Pf6N2E2_5868 at 6688.497 kb on + strand, within Pf6N2E2_5868 at 6688.497 kb on + strand, within Pf6N2E2_5868 at 6688.497 kb on + strand, within Pf6N2E2_5868 at 6688.497 kb on + strand, within Pf6N2E2_5868 at 6688.497 kb on + strand, within Pf6N2E2_5868 at 6688.497 kb on + strand, within Pf6N2E2_5868 at 6688.498 kb on - strand, within Pf6N2E2_5868 at 6688.498 kb on - strand, within Pf6N2E2_5868 at 6688.498 kb on - strand, within Pf6N2E2_5868 at 6688.498 kb on - strand, within Pf6N2E2_5868 at 6688.498 kb on - strand, within Pf6N2E2_5868 at 6688.498 kb on - strand, within Pf6N2E2_5868 at 6688.575 kb on + strand, within Pf6N2E2_5868 at 6688.576 kb on - strand, within Pf6N2E2_5868 at 6688.617 kb on + strand, within Pf6N2E2_5868 at 6688.618 kb on - strand, within Pf6N2E2_5868 at 6688.618 kb on - strand, within Pf6N2E2_5868 at 6688.748 kb on + strand at 6688.748 kb on + strand at 6688.748 kb on + strand at 6688.789 kb on + strand at 6688.901 kb on + strand at 6688.934 kb on + strand at 6688.935 kb on - strand at 6688.935 kb on - strand at 6688.935 kb on - strand at 6688.935 kb on - strand at 6688.935 kb on - strand at 6689.199 kb on + strand, within Pf6N2E2_5869 at 6689.199 kb on + strand, within Pf6N2E2_5869 at 6689.200 kb on - strand, within Pf6N2E2_5869 at 6689.200 kb on - strand, within Pf6N2E2_5869 at 6689.200 kb on - strand, within Pf6N2E2_5869 at 6689.421 kb on + strand at 6689.490 kb on + strand at 6689.490 kb on + strand at 6689.490 kb on + strand at 6689.491 kb on - strand at 6689.491 kb on - strand at 6689.491 kb on - strand at 6689.491 kb on - strand at 6689.491 kb on - strand at 6691.374 kb on - strand at 6691.374 kb on - strand at 6691.374 kb on - strand at 6691.430 kb on - strand at 6691.486 kb on + strand at 6691.486 kb on + strand at 6691.486 kb on + strand at 6691.487 kb on - strand at 6691.487 kb on - strand at 6691.487 kb on - strand at 6691.547 kb on - strand at 6691.547 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM remove 6,688,493 + Pf6N2E2_5868 0.74 +0.5 6,688,493 + Pf6N2E2_5868 0.74 +0.9 6,688,494 - Pf6N2E2_5868 0.75 +0.2 6,688,494 - Pf6N2E2_5868 0.75 -0.4 6,688,497 + Pf6N2E2_5868 0.75 -0.4 6,688,497 + Pf6N2E2_5868 0.75 -0.4 6,688,497 + Pf6N2E2_5868 0.75 -0.7 6,688,497 + Pf6N2E2_5868 0.75 +0.4 6,688,497 + Pf6N2E2_5868 0.75 +0.1 6,688,497 + Pf6N2E2_5868 0.75 -0.1 6,688,497 + Pf6N2E2_5868 0.75 +0.9 6,688,497 + Pf6N2E2_5868 0.75 +1.3 6,688,497 + Pf6N2E2_5868 0.75 +0.9 6,688,497 + Pf6N2E2_5868 0.75 +0.5 6,688,497 + Pf6N2E2_5868 0.75 +2.3 6,688,497 + Pf6N2E2_5868 0.75 -1.1 6,688,497 + Pf6N2E2_5868 0.75 -0.1 6,688,498 - Pf6N2E2_5868 0.75 +0.6 6,688,498 - Pf6N2E2_5868 0.75 -0.9 6,688,498 - Pf6N2E2_5868 0.75 +0.8 6,688,498 - Pf6N2E2_5868 0.75 +0.6 6,688,498 - Pf6N2E2_5868 0.75 -1.0 6,688,498 - Pf6N2E2_5868 0.75 +0.1 6,688,575 + Pf6N2E2_5868 0.83 -0.6 6,688,576 - Pf6N2E2_5868 0.83 -1.1 6,688,617 + Pf6N2E2_5868 0.87 -0.1 6,688,618 - Pf6N2E2_5868 0.87 -0.4 6,688,618 - Pf6N2E2_5868 0.87 +0.1 6,688,748 + +1.0 6,688,748 + -0.1 6,688,748 + -1.8 6,688,789 + -1.1 6,688,901 + +0.3 6,688,934 + -0.7 6,688,935 - -0.4 6,688,935 - -1.6 6,688,935 - -1.7 6,688,935 - -0.3 6,688,935 - -0.3 6,689,199 + Pf6N2E2_5869 0.57 -0.7 6,689,199 + Pf6N2E2_5869 0.57 -0.4 6,689,200 - Pf6N2E2_5869 0.57 +0.5 6,689,200 - Pf6N2E2_5869 0.57 -1.1 6,689,200 - Pf6N2E2_5869 0.57 -0.5 6,689,421 + +0.4 6,689,490 + -0.1 6,689,490 + -0.1 6,689,490 + +0.9 6,689,491 - -0.1 6,689,491 - -0.1 6,689,491 - +0.9 6,689,491 - -0.7 6,689,491 - -1.1 6,691,374 - +0.6 6,691,374 - -0.6 6,691,374 - +0.9 6,691,430 - +0.0 6,691,486 + -1.0 6,691,486 + -0.4 6,691,486 + -2.3 6,691,487 - -0.4 6,691,487 - -0.4 6,691,487 - -0.0 6,691,547 - +0.9 6,691,547 - -0.4
Or see this region's nucleotide sequence