Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5603

Experiment: Cobalt chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5602 and Pf6N2E2_5603 are separated by 59 nucleotidesPf6N2E2_5603 and Pf6N2E2_5604 are separated by 164 nucleotidesPf6N2E2_5604 and Pf6N2E2_5605 are separated by 66 nucleotides Pf6N2E2_5602 - Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like, at 6,417,491 to 6,418,585 _5602 Pf6N2E2_5603 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 6,418,645 to 6,419,403 _5603 Pf6N2E2_5604 - Putative heme iron utilization protein, at 6,419,568 to 6,420,299 _5604 Pf6N2E2_5605 - FxsA protein, at 6,420,366 to 6,420,842 _5605 Position (kb) 6418 6419 6420Strain fitness (log2 ratio) -2 -1 0 1 2at 6418.646 kb on + strandat 6418.646 kb on + strandat 6418.646 kb on + strandat 6418.646 kb on + strandat 6418.647 kb on - strandat 6418.647 kb on - strandat 6418.688 kb on + strandat 6418.688 kb on + strandat 6418.688 kb on + strandat 6418.688 kb on + strandat 6418.688 kb on + strandat 6418.689 kb on - strandat 6418.689 kb on - strandat 6418.689 kb on - strandat 6418.689 kb on - strandat 6418.689 kb on - strandat 6418.689 kb on - strandat 6418.691 kb on + strandat 6418.692 kb on - strandat 6418.707 kb on + strandat 6418.707 kb on + strandat 6418.707 kb on + strandat 6418.708 kb on - strandat 6418.708 kb on - strandat 6418.708 kb on - strandat 6418.709 kb on + strandat 6418.709 kb on + strandat 6418.709 kb on + strandat 6418.709 kb on + strandat 6418.709 kb on + strandat 6418.709 kb on + strandat 6418.709 kb on + strandat 6418.710 kb on - strandat 6418.710 kb on - strandat 6418.710 kb on - strandat 6418.710 kb on - strandat 6418.710 kb on - strandat 6418.710 kb on - strandat 6418.919 kb on + strand, within Pf6N2E2_5603at 6418.919 kb on + strand, within Pf6N2E2_5603at 6418.919 kb on + strand, within Pf6N2E2_5603at 6418.920 kb on - strand, within Pf6N2E2_5603at 6418.920 kb on - strand, within Pf6N2E2_5603at 6418.920 kb on - strand, within Pf6N2E2_5603at 6418.920 kb on - strand, within Pf6N2E2_5603at 6418.920 kb on - strand, within Pf6N2E2_5603at 6419.228 kb on + strand, within Pf6N2E2_5603at 6419.228 kb on + strand, within Pf6N2E2_5603at 6419.228 kb on + strand, within Pf6N2E2_5603at 6419.229 kb on - strand, within Pf6N2E2_5603at 6419.376 kb on + strandat 6419.376 kb on + strandat 6419.383 kb on + strandat 6419.383 kb on + strandat 6419.383 kb on + strandat 6419.384 kb on - strandat 6419.384 kb on - strandat 6419.384 kb on - strandat 6419.384 kb on - strandat 6419.384 kb on - strandat 6419.496 kb on + strandat 6419.497 kb on - strandat 6419.497 kb on - strandat 6419.540 kb on - strandat 6419.564 kb on + strandat 6419.565 kb on - strandat 6419.565 kb on - strandat 6419.617 kb on - strandat 6419.826 kb on + strand, within Pf6N2E2_5604at 6419.886 kb on + strand, within Pf6N2E2_5604at 6419.886 kb on + strand, within Pf6N2E2_5604at 6419.889 kb on + strand, within Pf6N2E2_5604at 6419.889 kb on + strand, within Pf6N2E2_5604at 6419.889 kb on + strand, within Pf6N2E2_5604at 6419.890 kb on - strand, within Pf6N2E2_5604at 6419.896 kb on - strand, within Pf6N2E2_5604at 6419.896 kb on - strand, within Pf6N2E2_5604at 6419.916 kb on + strand, within Pf6N2E2_5604at 6419.916 kb on + strand, within Pf6N2E2_5604at 6419.970 kb on + strand, within Pf6N2E2_5604at 6419.971 kb on - strand, within Pf6N2E2_5604at 6419.971 kb on - strand, within Pf6N2E2_5604at 6420.001 kb on + strand, within Pf6N2E2_5604at 6420.097 kb on - strand, within Pf6N2E2_5604at 6420.250 kb on - strandat 6420.323 kb on + strandat 6420.324 kb on - strandat 6420.333 kb on + strandat 6420.333 kb on + strandat 6420.333 kb on + strandat 6420.334 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
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6,418,646 + +0.3
6,418,646 + -0.8
6,418,646 + +0.7
6,418,646 + +0.1
6,418,647 - +0.6
6,418,647 - -0.2
6,418,688 + +0.7
6,418,688 + +0.6
6,418,688 + -1.4
6,418,688 + +1.8
6,418,688 + -0.2
6,418,689 - +1.8
6,418,689 - +0.4
6,418,689 - -0.3
6,418,689 - +0.3
6,418,689 - -1.3
6,418,689 - +1.5
6,418,691 + -0.9
6,418,692 - +0.0
6,418,707 + -0.4
6,418,707 + -1.2
6,418,707 + +0.4
6,418,708 - -0.2
6,418,708 - +0.9
6,418,708 - -0.3
6,418,709 + +0.4
6,418,709 + +1.5
6,418,709 + +0.1
6,418,709 + +0.8
6,418,709 + +0.3
6,418,709 + -0.7
6,418,709 + -1.6
6,418,710 - -0.3
6,418,710 - +0.0
6,418,710 - -0.5
6,418,710 - +0.9
6,418,710 - -0.1
6,418,710 - +0.9
6,418,919 + Pf6N2E2_5603 0.36 -0.2
6,418,919 + Pf6N2E2_5603 0.36 +0.3
6,418,919 + Pf6N2E2_5603 0.36 +0.4
6,418,920 - Pf6N2E2_5603 0.36 +0.8
6,418,920 - Pf6N2E2_5603 0.36 -0.2
6,418,920 - Pf6N2E2_5603 0.36 +0.0
6,418,920 - Pf6N2E2_5603 0.36 +0.0
6,418,920 - Pf6N2E2_5603 0.36 -1.6
6,419,228 + Pf6N2E2_5603 0.77 +0.4
6,419,228 + Pf6N2E2_5603 0.77 +0.6
6,419,228 + Pf6N2E2_5603 0.77 +0.3
6,419,229 - Pf6N2E2_5603 0.77 +1.1
6,419,376 + -1.2
6,419,376 + -1.3
6,419,383 + -0.4
6,419,383 + +0.1
6,419,383 + -1.1
6,419,384 - -0.1
6,419,384 - +0.9
6,419,384 - +0.1
6,419,384 - -1.3
6,419,384 - -1.1
6,419,496 + -1.1
6,419,497 - -0.9
6,419,497 - -0.6
6,419,540 - +0.1
6,419,564 + +0.1
6,419,565 - +1.2
6,419,565 - -1.6
6,419,617 - +1.2
6,419,826 + Pf6N2E2_5604 0.35 +0.6
6,419,886 + Pf6N2E2_5604 0.43 -0.3
6,419,886 + Pf6N2E2_5604 0.43 +1.1
6,419,889 + Pf6N2E2_5604 0.44 +0.9
6,419,889 + Pf6N2E2_5604 0.44 -0.8
6,419,889 + Pf6N2E2_5604 0.44 -0.4
6,419,890 - Pf6N2E2_5604 0.44 +0.5
6,419,896 - Pf6N2E2_5604 0.45 -1.3
6,419,896 - Pf6N2E2_5604 0.45 -2.1
6,419,916 + Pf6N2E2_5604 0.48 -0.9
6,419,916 + Pf6N2E2_5604 0.48 +0.5
6,419,970 + Pf6N2E2_5604 0.55 -1.1
6,419,971 - Pf6N2E2_5604 0.55 -0.1
6,419,971 - Pf6N2E2_5604 0.55 +0.9
6,420,001 + Pf6N2E2_5604 0.59 -0.1
6,420,097 - Pf6N2E2_5604 0.72 -0.6
6,420,250 - -0.4
6,420,323 + +0.4
6,420,324 - -0.1
6,420,333 + -2.4
6,420,333 + -0.4
6,420,333 + -0.4
6,420,334 - +1.1

Or see this region's nucleotide sequence