Experiment: Cobalt chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4754 and Pf6N2E2_4755 are separated by 204 nucleotides Pf6N2E2_4755 and Pf6N2E2_4756 are separated by 211 nucleotides
Pf6N2E2_4754 - Protein rarD, at 5,492,262 to 5,493,149
_4754
Pf6N2E2_4755 - YihE protein, required for LPS synthesis, at 5,493,354 to 5,494,328
_4755
Pf6N2E2_4756 - Putative phosphatase, at 5,494,540 to 5,496,435
_4756
Position (kb) 5493
5494
5495 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5492.410 kb on + strand, within Pf6N2E2_4754 at 5492.411 kb on - strand, within Pf6N2E2_4754 at 5492.411 kb on - strand, within Pf6N2E2_4754 at 5492.411 kb on - strand, within Pf6N2E2_4754 at 5492.429 kb on + strand, within Pf6N2E2_4754 at 5492.429 kb on + strand, within Pf6N2E2_4754 at 5492.429 kb on + strand, within Pf6N2E2_4754 at 5492.429 kb on + strand, within Pf6N2E2_4754 at 5492.429 kb on + strand, within Pf6N2E2_4754 at 5492.430 kb on - strand, within Pf6N2E2_4754 at 5492.430 kb on - strand, within Pf6N2E2_4754 at 5492.430 kb on - strand, within Pf6N2E2_4754 at 5492.430 kb on - strand, within Pf6N2E2_4754 at 5492.430 kb on - strand, within Pf6N2E2_4754 at 5492.430 kb on - strand, within Pf6N2E2_4754 at 5492.430 kb on - strand, within Pf6N2E2_4754 at 5492.430 kb on - strand, within Pf6N2E2_4754 at 5492.430 kb on - strand, within Pf6N2E2_4754 at 5492.434 kb on + strand, within Pf6N2E2_4754 at 5492.434 kb on + strand, within Pf6N2E2_4754 at 5492.435 kb on - strand, within Pf6N2E2_4754 at 5492.435 kb on - strand, within Pf6N2E2_4754 at 5492.435 kb on - strand, within Pf6N2E2_4754 at 5492.607 kb on + strand, within Pf6N2E2_4754 at 5492.608 kb on - strand, within Pf6N2E2_4754 at 5492.608 kb on - strand, within Pf6N2E2_4754 at 5492.608 kb on - strand, within Pf6N2E2_4754 at 5492.659 kb on + strand, within Pf6N2E2_4754 at 5492.660 kb on - strand, within Pf6N2E2_4754 at 5492.808 kb on + strand, within Pf6N2E2_4754 at 5492.808 kb on + strand, within Pf6N2E2_4754 at 5492.808 kb on + strand, within Pf6N2E2_4754 at 5492.808 kb on + strand, within Pf6N2E2_4754 at 5492.808 kb on + strand, within Pf6N2E2_4754 at 5492.808 kb on + strand, within Pf6N2E2_4754 at 5492.809 kb on - strand at 5492.809 kb on - strand, within Pf6N2E2_4754 at 5492.809 kb on - strand, within Pf6N2E2_4754 at 5492.809 kb on - strand, within Pf6N2E2_4754 at 5492.830 kb on + strand, within Pf6N2E2_4754 at 5492.830 kb on + strand, within Pf6N2E2_4754 at 5492.830 kb on + strand, within Pf6N2E2_4754 at 5492.830 kb on + strand, within Pf6N2E2_4754 at 5492.830 kb on + strand, within Pf6N2E2_4754 at 5492.830 kb on + strand, within Pf6N2E2_4754 at 5492.830 kb on + strand, within Pf6N2E2_4754 at 5492.830 kb on + strand, within Pf6N2E2_4754 at 5492.830 kb on + strand, within Pf6N2E2_4754 at 5492.831 kb on - strand, within Pf6N2E2_4754 at 5492.831 kb on - strand, within Pf6N2E2_4754 at 5492.831 kb on - strand, within Pf6N2E2_4754 at 5492.831 kb on - strand, within Pf6N2E2_4754 at 5492.831 kb on - strand, within Pf6N2E2_4754 at 5492.831 kb on - strand, within Pf6N2E2_4754 at 5492.831 kb on - strand, within Pf6N2E2_4754 at 5492.831 kb on - strand, within Pf6N2E2_4754 at 5492.833 kb on + strand, within Pf6N2E2_4754 at 5492.834 kb on - strand, within Pf6N2E2_4754 at 5492.834 kb on - strand, within Pf6N2E2_4754 at 5492.881 kb on + strand, within Pf6N2E2_4754 at 5492.881 kb on + strand, within Pf6N2E2_4754 at 5492.881 kb on + strand, within Pf6N2E2_4754 at 5492.881 kb on + strand, within Pf6N2E2_4754 at 5492.881 kb on + strand, within Pf6N2E2_4754 at 5492.881 kb on + strand, within Pf6N2E2_4754 at 5492.881 kb on + strand, within Pf6N2E2_4754 at 5492.881 kb on + strand, within Pf6N2E2_4754 at 5492.882 kb on - strand, within Pf6N2E2_4754 at 5492.882 kb on - strand, within Pf6N2E2_4754 at 5492.882 kb on - strand, within Pf6N2E2_4754 at 5493.073 kb on + strand at 5493.073 kb on + strand at 5493.073 kb on + strand at 5493.073 kb on + strand at 5493.074 kb on + strand at 5493.074 kb on - strand at 5493.074 kb on - strand at 5493.074 kb on - strand at 5493.100 kb on + strand at 5493.100 kb on + strand at 5493.100 kb on + strand at 5493.100 kb on + strand at 5493.100 kb on + strand at 5493.100 kb on + strand at 5493.100 kb on + strand at 5493.100 kb on + strand at 5493.101 kb on - strand at 5493.101 kb on - strand at 5493.101 kb on - strand at 5493.101 kb on - strand at 5493.101 kb on - strand at 5493.119 kb on + strand at 5493.120 kb on - strand at 5493.120 kb on - strand at 5493.121 kb on + strand at 5493.121 kb on + strand at 5493.121 kb on + strand at 5493.121 kb on + strand at 5493.164 kb on + strand at 5493.165 kb on - strand at 5493.172 kb on + strand at 5493.172 kb on + strand at 5493.172 kb on + strand at 5493.172 kb on + strand at 5493.173 kb on - strand at 5493.173 kb on - strand at 5493.173 kb on - strand at 5493.189 kb on + strand at 5493.189 kb on + strand at 5493.190 kb on - strand at 5493.190 kb on - strand at 5493.412 kb on - strand at 5493.412 kb on - strand at 5493.502 kb on + strand, within Pf6N2E2_4755 at 5493.502 kb on + strand, within Pf6N2E2_4755 at 5493.503 kb on - strand, within Pf6N2E2_4755 at 5493.772 kb on + strand, within Pf6N2E2_4755 at 5493.772 kb on + strand, within Pf6N2E2_4755 at 5493.773 kb on - strand, within Pf6N2E2_4755 at 5493.773 kb on - strand, within Pf6N2E2_4755 at 5494.099 kb on + strand, within Pf6N2E2_4755 at 5494.099 kb on + strand, within Pf6N2E2_4755 at 5494.099 kb on + strand, within Pf6N2E2_4755 at 5494.099 kb on + strand, within Pf6N2E2_4755 at 5494.100 kb on - strand, within Pf6N2E2_4755 at 5494.168 kb on + strand, within Pf6N2E2_4755 at 5494.168 kb on + strand, within Pf6N2E2_4755 at 5494.169 kb on - strand, within Pf6N2E2_4755 at 5494.214 kb on - strand, within Pf6N2E2_4755 at 5494.214 kb on - strand, within Pf6N2E2_4755 at 5494.228 kb on + strand, within Pf6N2E2_4755 at 5494.229 kb on - strand, within Pf6N2E2_4755 at 5494.229 kb on - strand, within Pf6N2E2_4755 at 5494.290 kb on + strand at 5494.517 kb on + strand at 5494.517 kb on + strand at 5494.517 kb on + strand at 5494.517 kb on + strand at 5494.517 kb on + strand at 5494.517 kb on + strand at 5494.517 kb on + strand at 5494.517 kb on + strand at 5494.517 kb on + strand at 5494.517 kb on + strand at 5494.517 kb on + strand at 5494.517 kb on + strand at 5494.518 kb on - strand at 5494.518 kb on - strand at 5494.518 kb on - strand at 5494.518 kb on - strand at 5494.518 kb on - strand at 5494.518 kb on - strand at 5494.662 kb on + strand at 5494.662 kb on + strand at 5494.662 kb on + strand at 5494.662 kb on + strand at 5494.663 kb on - strand at 5494.663 kb on - strand at 5494.663 kb on - strand at 5494.670 kb on + strand at 5494.670 kb on + strand at 5494.670 kb on + strand at 5494.670 kb on + strand at 5494.670 kb on + strand at 5494.671 kb on - strand at 5494.671 kb on - strand at 5494.924 kb on + strand, within Pf6N2E2_4756 at 5495.018 kb on + strand, within Pf6N2E2_4756 at 5495.019 kb on - strand, within Pf6N2E2_4756 at 5495.040 kb on + strand, within Pf6N2E2_4756 at 5495.099 kb on + strand, within Pf6N2E2_4756 at 5495.099 kb on + strand, within Pf6N2E2_4756 at 5495.100 kb on - strand, within Pf6N2E2_4756 at 5495.100 kb on - strand, within Pf6N2E2_4756 at 5495.100 kb on - strand, within Pf6N2E2_4756 at 5495.321 kb on + strand, within Pf6N2E2_4756 at 5495.321 kb on + strand, within Pf6N2E2_4756 at 5495.321 kb on + strand, within Pf6N2E2_4756 at 5495.321 kb on + strand, within Pf6N2E2_4756 at 5495.321 kb on + strand, within Pf6N2E2_4756 at 5495.321 kb on + strand, within Pf6N2E2_4756 at 5495.321 kb on + strand, within Pf6N2E2_4756 at 5495.321 kb on + strand, within Pf6N2E2_4756 at 5495.321 kb on + strand, within Pf6N2E2_4756 at 5495.321 kb on + strand, within Pf6N2E2_4756 at 5495.321 kb on + strand, within Pf6N2E2_4756 at 5495.321 kb on + strand, within Pf6N2E2_4756 at 5495.322 kb on - strand, within Pf6N2E2_4756 at 5495.322 kb on - strand, within Pf6N2E2_4756 at 5495.322 kb on - strand, within Pf6N2E2_4756 at 5495.322 kb on - strand, within Pf6N2E2_4756 at 5495.322 kb on - strand, within Pf6N2E2_4756 at 5495.322 kb on - strand, within Pf6N2E2_4756
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM remove 5,492,410 + Pf6N2E2_4754 0.17 +1.6 5,492,411 - Pf6N2E2_4754 0.17 +2.7 5,492,411 - Pf6N2E2_4754 0.17 +2.9 5,492,411 - Pf6N2E2_4754 0.17 +2.2 5,492,429 + Pf6N2E2_4754 0.19 +2.4 5,492,429 + Pf6N2E2_4754 0.19 +3.5 5,492,429 + Pf6N2E2_4754 0.19 +2.4 5,492,429 + Pf6N2E2_4754 0.19 +1.7 5,492,429 + Pf6N2E2_4754 0.19 +2.5 5,492,430 - Pf6N2E2_4754 0.19 +2.1 5,492,430 - Pf6N2E2_4754 0.19 +2.4 5,492,430 - Pf6N2E2_4754 0.19 +2.4 5,492,430 - Pf6N2E2_4754 0.19 +2.6 5,492,430 - Pf6N2E2_4754 0.19 +2.1 5,492,430 - Pf6N2E2_4754 0.19 +1.1 5,492,430 - Pf6N2E2_4754 0.19 +2.4 5,492,430 - Pf6N2E2_4754 0.19 +2.6 5,492,430 - Pf6N2E2_4754 0.19 +2.2 5,492,434 + Pf6N2E2_4754 0.19 +3.9 5,492,434 + Pf6N2E2_4754 0.19 +2.6 5,492,435 - Pf6N2E2_4754 0.19 +2.4 5,492,435 - Pf6N2E2_4754 0.19 +3.0 5,492,435 - Pf6N2E2_4754 0.19 +2.9 5,492,607 + Pf6N2E2_4754 0.39 +3.0 5,492,608 - Pf6N2E2_4754 0.39 +2.9 5,492,608 - Pf6N2E2_4754 0.39 +3.2 5,492,608 - Pf6N2E2_4754 0.39 +3.5 5,492,659 + Pf6N2E2_4754 0.45 +2.6 5,492,660 - Pf6N2E2_4754 0.45 +2.1 5,492,808 + Pf6N2E2_4754 0.61 +2.8 5,492,808 + Pf6N2E2_4754 0.61 +2.9 5,492,808 + Pf6N2E2_4754 0.61 +2.9 5,492,808 + Pf6N2E2_4754 0.61 +1.8 5,492,808 + Pf6N2E2_4754 0.61 +2.6 5,492,808 + Pf6N2E2_4754 0.61 +3.9 5,492,809 - +2.8 5,492,809 - Pf6N2E2_4754 0.62 +2.6 5,492,809 - Pf6N2E2_4754 0.62 +2.0 5,492,809 - Pf6N2E2_4754 0.62 +1.1 5,492,830 + Pf6N2E2_4754 0.64 +3.3 5,492,830 + Pf6N2E2_4754 0.64 +2.9 5,492,830 + Pf6N2E2_4754 0.64 +2.3 5,492,830 + Pf6N2E2_4754 0.64 +2.5 5,492,830 + Pf6N2E2_4754 0.64 +1.7 5,492,830 + Pf6N2E2_4754 0.64 +1.2 5,492,830 + Pf6N2E2_4754 0.64 +1.3 5,492,830 + Pf6N2E2_4754 0.64 +1.3 5,492,830 + Pf6N2E2_4754 0.64 +2.3 5,492,831 - Pf6N2E2_4754 0.64 +2.1 5,492,831 - Pf6N2E2_4754 0.64 +2.6 5,492,831 - Pf6N2E2_4754 0.64 +2.2 5,492,831 - Pf6N2E2_4754 0.64 +2.4 5,492,831 - Pf6N2E2_4754 0.64 +2.6 5,492,831 - Pf6N2E2_4754 0.64 +2.1 5,492,831 - Pf6N2E2_4754 0.64 +2.9 5,492,831 - Pf6N2E2_4754 0.64 +2.1 5,492,833 + Pf6N2E2_4754 0.64 +2.8 5,492,834 - Pf6N2E2_4754 0.64 +1.8 5,492,834 - Pf6N2E2_4754 0.64 +1.8 5,492,881 + Pf6N2E2_4754 0.70 +1.2 5,492,881 + Pf6N2E2_4754 0.70 +3.5 5,492,881 + Pf6N2E2_4754 0.70 +3.7 5,492,881 + Pf6N2E2_4754 0.70 +1.8 5,492,881 + Pf6N2E2_4754 0.70 +2.0 5,492,881 + Pf6N2E2_4754 0.70 +2.6 5,492,881 + Pf6N2E2_4754 0.70 +2.1 5,492,881 + Pf6N2E2_4754 0.70 +1.8 5,492,882 - Pf6N2E2_4754 0.70 +3.4 5,492,882 - Pf6N2E2_4754 0.70 +2.6 5,492,882 - Pf6N2E2_4754 0.70 +1.7 5,493,073 + +4.4 5,493,073 + +1.5 5,493,073 + +2.0 5,493,073 + +3.8 5,493,074 + +2.8 5,493,074 - +2.9 5,493,074 - +1.4 5,493,074 - +2.4 5,493,100 + +2.6 5,493,100 + +2.8 5,493,100 + +3.0 5,493,100 + +2.3 5,493,100 + +2.5 5,493,100 + +2.9 5,493,100 + +1.6 5,493,100 + +2.3 5,493,101 - +3.1 5,493,101 - +2.5 5,493,101 - +2.5 5,493,101 - +1.8 5,493,101 - +2.6 5,493,119 + +0.9 5,493,120 - +0.2 5,493,120 - +2.8 5,493,121 + +1.4 5,493,121 + +2.0 5,493,121 + +1.7 5,493,121 + +1.9 5,493,164 + +2.1 5,493,165 - -1.0 5,493,172 + +1.9 5,493,172 + +2.4 5,493,172 + +2.1 5,493,172 + +2.6 5,493,173 - +0.7 5,493,173 - -0.8 5,493,173 - -0.5 5,493,189 + +0.7 5,493,189 + +2.3 5,493,190 - -0.8 5,493,190 - -1.3 5,493,412 - -2.5 5,493,412 - -1.1 5,493,502 + Pf6N2E2_4755 0.15 -0.8 5,493,502 + Pf6N2E2_4755 0.15 -0.7 5,493,503 - Pf6N2E2_4755 0.15 -1.9 5,493,772 + Pf6N2E2_4755 0.43 -0.7 5,493,772 + Pf6N2E2_4755 0.43 -0.6 5,493,773 - Pf6N2E2_4755 0.43 -0.8 5,493,773 - Pf6N2E2_4755 0.43 -0.5 5,494,099 + Pf6N2E2_4755 0.76 +0.9 5,494,099 + Pf6N2E2_4755 0.76 -0.9 5,494,099 + Pf6N2E2_4755 0.76 -1.1 5,494,099 + Pf6N2E2_4755 0.76 +0.4 5,494,100 - Pf6N2E2_4755 0.77 -0.5 5,494,168 + Pf6N2E2_4755 0.83 +0.0 5,494,168 + Pf6N2E2_4755 0.83 +0.6 5,494,169 - Pf6N2E2_4755 0.84 -1.2 5,494,214 - Pf6N2E2_4755 0.88 -0.5 5,494,214 - Pf6N2E2_4755 0.88 -0.2 5,494,228 + Pf6N2E2_4755 0.90 +0.4 5,494,229 - Pf6N2E2_4755 0.90 -0.7 5,494,229 - Pf6N2E2_4755 0.90 -0.2 5,494,290 + +0.1 5,494,517 + -0.6 5,494,517 + +0.5 5,494,517 + +0.5 5,494,517 + +0.2 5,494,517 + +0.6 5,494,517 + +0.0 5,494,517 + -0.6 5,494,517 + +1.2 5,494,517 + +0.2 5,494,517 + +0.3 5,494,517 + -0.0 5,494,517 + +0.0 5,494,518 - -0.1 5,494,518 - +0.2 5,494,518 - -0.4 5,494,518 - -0.7 5,494,518 - -0.3 5,494,518 - -0.1 5,494,662 + -0.1 5,494,662 + +0.3 5,494,662 + +0.0 5,494,662 + -0.6 5,494,663 - +0.4 5,494,663 - -1.0 5,494,663 - -0.4 5,494,670 + +0.0 5,494,670 + -0.6 5,494,670 + -0.2 5,494,670 + +0.1 5,494,670 + -0.4 5,494,671 - -0.8 5,494,671 - +0.1 5,494,924 + Pf6N2E2_4756 0.20 +0.4 5,495,018 + Pf6N2E2_4756 0.25 -0.6 5,495,019 - Pf6N2E2_4756 0.25 -0.8 5,495,040 + Pf6N2E2_4756 0.26 -0.8 5,495,099 + Pf6N2E2_4756 0.29 +1.6 5,495,099 + Pf6N2E2_4756 0.29 +0.4 5,495,100 - Pf6N2E2_4756 0.30 -0.0 5,495,100 - Pf6N2E2_4756 0.30 -1.0 5,495,100 - Pf6N2E2_4756 0.30 -0.2 5,495,321 + Pf6N2E2_4756 0.41 +0.5 5,495,321 + Pf6N2E2_4756 0.41 -0.9 5,495,321 + Pf6N2E2_4756 0.41 -0.5 5,495,321 + Pf6N2E2_4756 0.41 -0.4 5,495,321 + Pf6N2E2_4756 0.41 +0.6 5,495,321 + Pf6N2E2_4756 0.41 +0.3 5,495,321 + Pf6N2E2_4756 0.41 +0.4 5,495,321 + Pf6N2E2_4756 0.41 -0.3 5,495,321 + Pf6N2E2_4756 0.41 +0.3 5,495,321 + Pf6N2E2_4756 0.41 -1.4 5,495,321 + Pf6N2E2_4756 0.41 +0.0 5,495,321 + Pf6N2E2_4756 0.41 -0.6 5,495,322 - Pf6N2E2_4756 0.41 +1.5 5,495,322 - Pf6N2E2_4756 0.41 +0.1 5,495,322 - Pf6N2E2_4756 0.41 +0.4 5,495,322 - Pf6N2E2_4756 0.41 -1.4 5,495,322 - Pf6N2E2_4756 0.41 +0.4 5,495,322 - Pf6N2E2_4756 0.41 -0.2
Or see this region's nucleotide sequence