Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4308

Experiment: Cobalt chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4306 and Pf6N2E2_4307 are separated by 5 nucleotidesPf6N2E2_4307 and Pf6N2E2_4308 overlap by 4 nucleotidesPf6N2E2_4308 and Pf6N2E2_4309 are separated by 5 nucleotidesPf6N2E2_4309 and Pf6N2E2_4310 are separated by 13 nucleotides Pf6N2E2_4306 - Uncharacterized protein ImpI/VasC, at 5,022,187 to 5,023,032 _4306 Pf6N2E2_4307 - Type VI secretion lipoprotein/VasD, at 5,023,038 to 5,023,541 _4307 Pf6N2E2_4308 - Uncharacterized protein ImpJ/VasE, at 5,023,538 to 5,024,869 _4308 Pf6N2E2_4309 - Outer membrane protein ImpK/VasF, OmpA/MotB domain, at 5,024,875 to 5,025,738 _4309 Pf6N2E2_4310 - IcmF-related protein, at 5,025,752 to 5,029,195 _4310 Position (kb) 5023 5024 5025Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5022.691 kb on + strand, within Pf6N2E2_4306at 5022.691 kb on + strand, within Pf6N2E2_4306at 5022.699 kb on + strand, within Pf6N2E2_4306at 5022.699 kb on + strand, within Pf6N2E2_4306at 5022.979 kb on + strandat 5022.980 kb on - strandat 5022.980 kb on - strandat 5022.980 kb on - strandat 5022.980 kb on - strandat 5022.980 kb on - strandat 5022.980 kb on - strandat 5023.272 kb on + strand, within Pf6N2E2_4307at 5023.365 kb on - strand, within Pf6N2E2_4307at 5023.393 kb on + strand, within Pf6N2E2_4307at 5023.405 kb on - strand, within Pf6N2E2_4307at 5023.434 kb on + strand, within Pf6N2E2_4307at 5023.528 kb on + strandat 5023.528 kb on + strandat 5023.528 kb on + strandat 5023.529 kb on - strandat 5023.529 kb on - strandat 5023.529 kb on - strandat 5023.529 kb on - strandat 5023.529 kb on - strandat 5023.610 kb on + strandat 5023.611 kb on - strandat 5023.611 kb on - strandat 5023.655 kb on + strandat 5023.655 kb on + strandat 5023.656 kb on - strandat 5023.656 kb on - strandat 5023.798 kb on - strand, within Pf6N2E2_4308at 5023.798 kb on - strand, within Pf6N2E2_4308at 5023.807 kb on + strand, within Pf6N2E2_4308at 5023.807 kb on + strand, within Pf6N2E2_4308at 5023.826 kb on + strand, within Pf6N2E2_4308at 5023.826 kb on + strand, within Pf6N2E2_4308at 5023.901 kb on + strand, within Pf6N2E2_4308at 5023.902 kb on - strand, within Pf6N2E2_4308at 5023.910 kb on + strand, within Pf6N2E2_4308at 5023.910 kb on + strand, within Pf6N2E2_4308at 5023.910 kb on + strand, within Pf6N2E2_4308at 5023.910 kb on + strand, within Pf6N2E2_4308at 5023.910 kb on + strand, within Pf6N2E2_4308at 5023.910 kb on + strand, within Pf6N2E2_4308at 5023.911 kb on - strand, within Pf6N2E2_4308at 5023.911 kb on - strand, within Pf6N2E2_4308at 5023.911 kb on - strand, within Pf6N2E2_4308at 5024.127 kb on - strand, within Pf6N2E2_4308at 5024.127 kb on - strand, within Pf6N2E2_4308at 5024.127 kb on - strand, within Pf6N2E2_4308at 5024.254 kb on + strand, within Pf6N2E2_4308at 5024.255 kb on - strand, within Pf6N2E2_4308at 5024.255 kb on - strand, within Pf6N2E2_4308at 5024.286 kb on - strand, within Pf6N2E2_4308at 5024.286 kb on - strand, within Pf6N2E2_4308at 5024.304 kb on + strand, within Pf6N2E2_4308at 5024.304 kb on + strand, within Pf6N2E2_4308at 5024.304 kb on + strand, within Pf6N2E2_4308at 5024.304 kb on + strand, within Pf6N2E2_4308at 5024.304 kb on + strand, within Pf6N2E2_4308at 5024.304 kb on + strand, within Pf6N2E2_4308at 5024.304 kb on + strand, within Pf6N2E2_4308at 5024.305 kb on - strand, within Pf6N2E2_4308at 5024.305 kb on - strand, within Pf6N2E2_4308at 5024.305 kb on - strand, within Pf6N2E2_4308at 5024.320 kb on - strand, within Pf6N2E2_4308at 5024.322 kb on - strand, within Pf6N2E2_4308at 5024.331 kb on + strand, within Pf6N2E2_4308at 5024.332 kb on - strand, within Pf6N2E2_4308at 5024.408 kb on - strand, within Pf6N2E2_4308at 5024.408 kb on - strand, within Pf6N2E2_4308at 5024.747 kb on + strandat 5024.747 kb on + strandat 5024.747 kb on + strandat 5024.747 kb on + strandat 5024.748 kb on - strandat 5024.788 kb on + strandat 5024.987 kb on + strand, within Pf6N2E2_4309at 5024.987 kb on + strand, within Pf6N2E2_4309at 5024.988 kb on - strand, within Pf6N2E2_4309at 5025.004 kb on + strand, within Pf6N2E2_4309at 5025.223 kb on + strand, within Pf6N2E2_4309at 5025.224 kb on - strand, within Pf6N2E2_4309at 5025.296 kb on + strand, within Pf6N2E2_4309at 5025.297 kb on - strand, within Pf6N2E2_4309at 5025.297 kb on - strand, within Pf6N2E2_4309at 5025.297 kb on - strand, within Pf6N2E2_4309at 5025.409 kb on + strand, within Pf6N2E2_4309at 5025.409 kb on + strand, within Pf6N2E2_4309at 5025.409 kb on + strand, within Pf6N2E2_4309at 5025.409 kb on + strand, within Pf6N2E2_4309at 5025.410 kb on - strand, within Pf6N2E2_4309at 5025.410 kb on - strand, within Pf6N2E2_4309at 5025.410 kb on - strand, within Pf6N2E2_4309at 5025.497 kb on - strand, within Pf6N2E2_4309at 5025.559 kb on + strand, within Pf6N2E2_4309at 5025.560 kb on - strand, within Pf6N2E2_4309at 5025.643 kb on + strand, within Pf6N2E2_4309at 5025.697 kb on + strandat 5025.736 kb on + strandat 5025.737 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
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5,022,691 + Pf6N2E2_4306 0.60 -0.2
5,022,691 + Pf6N2E2_4306 0.60 +1.8
5,022,699 + Pf6N2E2_4306 0.61 +0.8
5,022,699 + Pf6N2E2_4306 0.61 +0.7
5,022,979 + -0.3
5,022,980 - +1.2
5,022,980 - +0.1
5,022,980 - -1.4
5,022,980 - +0.1
5,022,980 - -0.9
5,022,980 - -0.8
5,023,272 + Pf6N2E2_4307 0.46 +0.8
5,023,365 - Pf6N2E2_4307 0.65 +0.2
5,023,393 + Pf6N2E2_4307 0.70 -1.7
5,023,405 - Pf6N2E2_4307 0.73 -0.7
5,023,434 + Pf6N2E2_4307 0.79 -1.2
5,023,528 + -0.3
5,023,528 + +1.2
5,023,528 + +0.4
5,023,529 - -0.1
5,023,529 - -0.8
5,023,529 - -0.4
5,023,529 - +0.6
5,023,529 - -0.1
5,023,610 + +0.7
5,023,611 - -0.3
5,023,611 - -0.1
5,023,655 + +0.1
5,023,655 + -0.3
5,023,656 - -0.9
5,023,656 - +0.1
5,023,798 - Pf6N2E2_4308 0.20 -0.4
5,023,798 - Pf6N2E2_4308 0.20 -0.4
5,023,807 + Pf6N2E2_4308 0.20 -0.5
5,023,807 + Pf6N2E2_4308 0.20 -1.6
5,023,826 + Pf6N2E2_4308 0.22 -0.3
5,023,826 + Pf6N2E2_4308 0.22 +1.0
5,023,901 + Pf6N2E2_4308 0.27 -1.2
5,023,902 - Pf6N2E2_4308 0.27 -2.3
5,023,910 + Pf6N2E2_4308 0.28 -1.1
5,023,910 + Pf6N2E2_4308 0.28 -1.6
5,023,910 + Pf6N2E2_4308 0.28 +0.4
5,023,910 + Pf6N2E2_4308 0.28 -0.4
5,023,910 + Pf6N2E2_4308 0.28 -0.4
5,023,910 + Pf6N2E2_4308 0.28 -1.0
5,023,911 - Pf6N2E2_4308 0.28 -0.6
5,023,911 - Pf6N2E2_4308 0.28 -1.2
5,023,911 - Pf6N2E2_4308 0.28 -1.8
5,024,127 - Pf6N2E2_4308 0.44 -0.1
5,024,127 - Pf6N2E2_4308 0.44 +0.1
5,024,127 - Pf6N2E2_4308 0.44 +1.4
5,024,254 + Pf6N2E2_4308 0.54 -2.1
5,024,255 - Pf6N2E2_4308 0.54 +0.4
5,024,255 - Pf6N2E2_4308 0.54 -0.5
5,024,286 - Pf6N2E2_4308 0.56 +1.4
5,024,286 - Pf6N2E2_4308 0.56 +0.2
5,024,304 + Pf6N2E2_4308 0.58 -0.9
5,024,304 + Pf6N2E2_4308 0.58 -0.2
5,024,304 + Pf6N2E2_4308 0.58 +0.0
5,024,304 + Pf6N2E2_4308 0.58 +0.2
5,024,304 + Pf6N2E2_4308 0.58 +0.1
5,024,304 + Pf6N2E2_4308 0.58 +1.1
5,024,304 + Pf6N2E2_4308 0.58 -0.7
5,024,305 - Pf6N2E2_4308 0.58 -1.3
5,024,305 - Pf6N2E2_4308 0.58 +0.3
5,024,305 - Pf6N2E2_4308 0.58 +0.6
5,024,320 - Pf6N2E2_4308 0.59 -0.2
5,024,322 - Pf6N2E2_4308 0.59 -0.3
5,024,331 + Pf6N2E2_4308 0.60 +1.4
5,024,332 - Pf6N2E2_4308 0.60 -0.5
5,024,408 - Pf6N2E2_4308 0.65 +0.5
5,024,408 - Pf6N2E2_4308 0.65 +0.6
5,024,747 + +0.8
5,024,747 + +0.6
5,024,747 + +2.4
5,024,747 + -0.0
5,024,748 - -0.4
5,024,788 + +1.5
5,024,987 + Pf6N2E2_4309 0.13 +0.5
5,024,987 + Pf6N2E2_4309 0.13 +1.1
5,024,988 - Pf6N2E2_4309 0.13 +1.4
5,025,004 + Pf6N2E2_4309 0.15 -0.7
5,025,223 + Pf6N2E2_4309 0.40 -0.4
5,025,224 - Pf6N2E2_4309 0.40 +1.1
5,025,296 + Pf6N2E2_4309 0.49 +2.4
5,025,297 - Pf6N2E2_4309 0.49 -1.2
5,025,297 - Pf6N2E2_4309 0.49 +1.1
5,025,297 - Pf6N2E2_4309 0.49 -1.2
5,025,409 + Pf6N2E2_4309 0.62 -0.1
5,025,409 + Pf6N2E2_4309 0.62 +3.7
5,025,409 + Pf6N2E2_4309 0.62 -0.7
5,025,409 + Pf6N2E2_4309 0.62 -0.0
5,025,410 - Pf6N2E2_4309 0.62 +0.6
5,025,410 - Pf6N2E2_4309 0.62 -0.4
5,025,410 - Pf6N2E2_4309 0.62 -1.2
5,025,497 - Pf6N2E2_4309 0.72 +0.4
5,025,559 + Pf6N2E2_4309 0.79 -0.1
5,025,560 - Pf6N2E2_4309 0.79 -0.7
5,025,643 + Pf6N2E2_4309 0.89 +0.6
5,025,697 + -0.0
5,025,736 + +0.7
5,025,737 - +0.9

Or see this region's nucleotide sequence