Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4183

Experiment: Cobalt chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4181 and Pf6N2E2_4182 are separated by 33 nucleotidesPf6N2E2_4182 and Pf6N2E2_4183 are separated by 115 nucleotidesPf6N2E2_4183 and Pf6N2E2_4184 are separated by 165 nucleotidesPf6N2E2_4184 and Pf6N2E2_4185 are separated by 175 nucleotides Pf6N2E2_4181 - Organic hydroperoxide resistance protein, at 4,866,115 to 4,866,534 _4181 Pf6N2E2_4182 - Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1), at 4,866,568 to 4,866,936 _4182 Pf6N2E2_4183 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 4,867,052 to 4,867,840 _4183 Pf6N2E2_4184 - Glyoxalase family protein, at 4,868,006 to 4,868,359 _4184 Pf6N2E2_4185 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 4,868,535 to 4,870,091 _4185 Position (kb) 4867 4868Strain fitness (log2 ratio) -2 -1 0 1 2at 4866.069 kb on + strandat 4866.102 kb on + strandat 4866.103 kb on - strandat 4866.103 kb on - strandat 4866.127 kb on + strandat 4866.127 kb on + strandat 4866.127 kb on + strandat 4866.127 kb on + strandat 4866.128 kb on - strandat 4866.274 kb on + strand, within Pf6N2E2_4181at 4866.532 kb on + strandat 4866.532 kb on + strandat 4866.533 kb on - strandat 4866.552 kb on + strandat 4866.553 kb on - strandat 4866.651 kb on + strand, within Pf6N2E2_4182at 4866.651 kb on + strand, within Pf6N2E2_4182at 4866.651 kb on + strand, within Pf6N2E2_4182at 4866.651 kb on + strand, within Pf6N2E2_4182at 4866.651 kb on + strand, within Pf6N2E2_4182at 4866.651 kb on + strand, within Pf6N2E2_4182at 4866.652 kb on - strand, within Pf6N2E2_4182at 4866.652 kb on - strand, within Pf6N2E2_4182at 4866.652 kb on - strand, within Pf6N2E2_4182at 4866.652 kb on - strand, within Pf6N2E2_4182at 4866.890 kb on + strand, within Pf6N2E2_4182at 4866.891 kb on - strand, within Pf6N2E2_4182at 4867.005 kb on + strandat 4867.005 kb on + strandat 4867.006 kb on - strandat 4867.006 kb on - strandat 4867.006 kb on - strandat 4867.006 kb on - strandat 4867.053 kb on + strandat 4867.053 kb on + strandat 4867.131 kb on + strand, within Pf6N2E2_4183at 4867.132 kb on - strand, within Pf6N2E2_4183at 4867.132 kb on - strand, within Pf6N2E2_4183at 4867.132 kb on - strand, within Pf6N2E2_4183at 4867.132 kb on - strand, within Pf6N2E2_4183at 4867.132 kb on - strand, within Pf6N2E2_4183at 4867.132 kb on - strand, within Pf6N2E2_4183at 4867.505 kb on + strand, within Pf6N2E2_4183at 4867.505 kb on + strand, within Pf6N2E2_4183at 4867.505 kb on + strand, within Pf6N2E2_4183at 4867.505 kb on + strand, within Pf6N2E2_4183at 4867.505 kb on + strand, within Pf6N2E2_4183at 4867.505 kb on + strand, within Pf6N2E2_4183at 4867.505 kb on + strand, within Pf6N2E2_4183at 4867.505 kb on + strand, within Pf6N2E2_4183at 4867.505 kb on + strand, within Pf6N2E2_4183at 4867.505 kb on + strand, within Pf6N2E2_4183at 4867.505 kb on + strand, within Pf6N2E2_4183at 4867.506 kb on - strand, within Pf6N2E2_4183at 4867.506 kb on - strand, within Pf6N2E2_4183at 4867.506 kb on - strand, within Pf6N2E2_4183at 4867.506 kb on - strand, within Pf6N2E2_4183at 4867.506 kb on - strand, within Pf6N2E2_4183at 4867.506 kb on - strand, within Pf6N2E2_4183at 4867.506 kb on - strand, within Pf6N2E2_4183at 4867.506 kb on - strand, within Pf6N2E2_4183at 4867.609 kb on - strand, within Pf6N2E2_4183at 4867.609 kb on - strand, within Pf6N2E2_4183at 4867.609 kb on - strand, within Pf6N2E2_4183at 4867.859 kb on - strandat 4867.880 kb on + strandat 4867.881 kb on - strandat 4867.881 kb on - strandat 4867.881 kb on - strandat 4867.897 kb on + strandat 4867.898 kb on - strandat 4867.957 kb on - strandat 4868.034 kb on + strandat 4868.050 kb on + strand, within Pf6N2E2_4184at 4868.051 kb on - strand, within Pf6N2E2_4184at 4868.151 kb on + strand, within Pf6N2E2_4184at 4868.151 kb on + strand, within Pf6N2E2_4184at 4868.151 kb on + strand, within Pf6N2E2_4184at 4868.151 kb on + strand, within Pf6N2E2_4184at 4868.152 kb on - strand, within Pf6N2E2_4184at 4868.152 kb on - strand, within Pf6N2E2_4184at 4868.152 kb on - strand, within Pf6N2E2_4184at 4868.152 kb on - strand, within Pf6N2E2_4184at 4868.152 kb on - strand, within Pf6N2E2_4184at 4868.235 kb on + strand, within Pf6N2E2_4184at 4868.235 kb on + strand, within Pf6N2E2_4184at 4868.235 kb on + strand, within Pf6N2E2_4184at 4868.236 kb on - strand, within Pf6N2E2_4184at 4868.236 kb on - strand, within Pf6N2E2_4184at 4868.236 kb on - strand, within Pf6N2E2_4184at 4868.236 kb on - strand, within Pf6N2E2_4184at 4868.236 kb on - strand, within Pf6N2E2_4184at 4868.236 kb on - strand, within Pf6N2E2_4184at 4868.247 kb on + strand, within Pf6N2E2_4184at 4868.280 kb on + strand, within Pf6N2E2_4184at 4868.280 kb on + strand, within Pf6N2E2_4184at 4868.280 kb on + strand, within Pf6N2E2_4184at 4868.280 kb on + strand, within Pf6N2E2_4184at 4868.280 kb on + strand, within Pf6N2E2_4184at 4868.280 kb on + strand, within Pf6N2E2_4184at 4868.280 kb on + strand, within Pf6N2E2_4184at 4868.280 kb on + strand, within Pf6N2E2_4184at 4868.280 kb on + strand, within Pf6N2E2_4184at 4868.280 kb on + strand, within Pf6N2E2_4184at 4868.280 kb on + strand, within Pf6N2E2_4184at 4868.281 kb on - strand, within Pf6N2E2_4184at 4868.281 kb on - strand, within Pf6N2E2_4184at 4868.281 kb on - strand, within Pf6N2E2_4184at 4868.281 kb on - strand, within Pf6N2E2_4184at 4868.281 kb on - strand, within Pf6N2E2_4184at 4868.281 kb on - strand, within Pf6N2E2_4184at 4868.281 kb on - strand, within Pf6N2E2_4184at 4868.281 kb on - strand, within Pf6N2E2_4184at 4868.281 kb on - strand, within Pf6N2E2_4184at 4868.281 kb on - strand, within Pf6N2E2_4184at 4868.281 kb on - strand, within Pf6N2E2_4184at 4868.281 kb on - strand, within Pf6N2E2_4184at 4868.344 kb on + strandat 4868.345 kb on - strandat 4868.386 kb on + strandat 4868.386 kb on + strandat 4868.397 kb on - strandat 4868.397 kb on - strandat 4868.467 kb on + strandat 4868.467 kb on + strandat 4868.467 kb on + strandat 4868.467 kb on + strandat 4868.467 kb on + strandat 4868.467 kb on + strandat 4868.467 kb on + strandat 4868.467 kb on + strandat 4868.467 kb on + strandat 4868.467 kb on + strandat 4868.467 kb on + strandat 4868.467 kb on + strandat 4868.467 kb on + strandat 4868.468 kb on - strandat 4868.468 kb on - strandat 4868.468 kb on - strandat 4868.468 kb on - strandat 4868.468 kb on - strandat 4868.468 kb on - strandat 4868.468 kb on - strandat 4868.468 kb on - strandat 4868.468 kb on - strandat 4868.468 kb on - strandat 4868.489 kb on + strandat 4868.489 kb on + strandat 4868.499 kb on + strandat 4868.499 kb on + strandat 4868.500 kb on - strandat 4868.536 kb on + strandat 4868.537 kb on - strandat 4868.537 kb on - strandat 4868.537 kb on - strandat 4868.537 kb on - strandat 4868.543 kb on + strandat 4868.543 kb on + strandat 4868.544 kb on - strandat 4868.553 kb on + strandat 4868.553 kb on + strandat 4868.554 kb on - strandat 4868.554 kb on - strandat 4868.742 kb on + strand, within Pf6N2E2_4185at 4868.742 kb on + strand, within Pf6N2E2_4185at 4868.742 kb on + strand, within Pf6N2E2_4185at 4868.747 kb on + strand, within Pf6N2E2_4185at 4868.747 kb on + strand, within Pf6N2E2_4185at 4868.748 kb on - strand, within Pf6N2E2_4185at 4868.748 kb on - strand, within Pf6N2E2_4185at 4868.748 kb on - strand, within Pf6N2E2_4185

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
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4,866,069 + -0.4
4,866,102 + -0.6
4,866,103 - +0.0
4,866,103 - +0.4
4,866,127 + -1.0
4,866,127 + -1.2
4,866,127 + +0.2
4,866,127 + -0.4
4,866,128 - +0.4
4,866,274 + Pf6N2E2_4181 0.38 -0.4
4,866,532 + +0.7
4,866,532 + +0.6
4,866,533 - +1.4
4,866,552 + -0.9
4,866,553 - -0.8
4,866,651 + Pf6N2E2_4182 0.22 +0.5
4,866,651 + Pf6N2E2_4182 0.22 +0.2
4,866,651 + Pf6N2E2_4182 0.22 +0.2
4,866,651 + Pf6N2E2_4182 0.22 -0.6
4,866,651 + Pf6N2E2_4182 0.22 +0.2
4,866,651 + Pf6N2E2_4182 0.22 +0.2
4,866,652 - Pf6N2E2_4182 0.23 -0.5
4,866,652 - Pf6N2E2_4182 0.23 -0.1
4,866,652 - Pf6N2E2_4182 0.23 +0.4
4,866,652 - Pf6N2E2_4182 0.23 -1.1
4,866,890 + Pf6N2E2_4182 0.87 +1.1
4,866,891 - Pf6N2E2_4182 0.88 -1.2
4,867,005 + -0.2
4,867,005 + +0.1
4,867,006 - -0.1
4,867,006 - +0.6
4,867,006 - +0.5
4,867,006 - +0.2
4,867,053 + -1.3
4,867,053 + -0.0
4,867,131 + Pf6N2E2_4183 0.10 -0.2
4,867,132 - Pf6N2E2_4183 0.10 -0.7
4,867,132 - Pf6N2E2_4183 0.10 +0.9
4,867,132 - Pf6N2E2_4183 0.10 +0.4
4,867,132 - Pf6N2E2_4183 0.10 -0.6
4,867,132 - Pf6N2E2_4183 0.10 +0.6
4,867,132 - Pf6N2E2_4183 0.10 -1.8
4,867,505 + Pf6N2E2_4183 0.57 -0.2
4,867,505 + Pf6N2E2_4183 0.57 -0.6
4,867,505 + Pf6N2E2_4183 0.57 +0.6
4,867,505 + Pf6N2E2_4183 0.57 +0.0
4,867,505 + Pf6N2E2_4183 0.57 -0.3
4,867,505 + Pf6N2E2_4183 0.57 +0.8
4,867,505 + Pf6N2E2_4183 0.57 +2.0
4,867,505 + Pf6N2E2_4183 0.57 +0.3
4,867,505 + Pf6N2E2_4183 0.57 -0.8
4,867,505 + Pf6N2E2_4183 0.57 +1.1
4,867,505 + Pf6N2E2_4183 0.57 +0.2
4,867,506 - Pf6N2E2_4183 0.58 +0.3
4,867,506 - Pf6N2E2_4183 0.58 -1.9
4,867,506 - Pf6N2E2_4183 0.58 +0.3
4,867,506 - Pf6N2E2_4183 0.58 +0.7
4,867,506 - Pf6N2E2_4183 0.58 -0.3
4,867,506 - Pf6N2E2_4183 0.58 +0.5
4,867,506 - Pf6N2E2_4183 0.58 -0.1
4,867,506 - Pf6N2E2_4183 0.58 -0.8
4,867,609 - Pf6N2E2_4183 0.71 +0.1
4,867,609 - Pf6N2E2_4183 0.71 +0.9
4,867,609 - Pf6N2E2_4183 0.71 +1.0
4,867,859 - -0.8
4,867,880 + -0.4
4,867,881 - +0.3
4,867,881 - -0.4
4,867,881 - +0.8
4,867,897 + +0.5
4,867,898 - +0.8
4,867,957 - +2.0
4,868,034 + -0.4
4,868,050 + Pf6N2E2_4184 0.12 -0.5
4,868,051 - Pf6N2E2_4184 0.13 +0.1
4,868,151 + Pf6N2E2_4184 0.41 -1.0
4,868,151 + Pf6N2E2_4184 0.41 +1.4
4,868,151 + Pf6N2E2_4184 0.41 -0.2
4,868,151 + Pf6N2E2_4184 0.41 -0.1
4,868,152 - Pf6N2E2_4184 0.41 -0.9
4,868,152 - Pf6N2E2_4184 0.41 +1.4
4,868,152 - Pf6N2E2_4184 0.41 +0.4
4,868,152 - Pf6N2E2_4184 0.41 -1.5
4,868,152 - Pf6N2E2_4184 0.41 -1.9
4,868,235 + Pf6N2E2_4184 0.65 -0.6
4,868,235 + Pf6N2E2_4184 0.65 -1.4
4,868,235 + Pf6N2E2_4184 0.65 +0.7
4,868,236 - Pf6N2E2_4184 0.65 -0.7
4,868,236 - Pf6N2E2_4184 0.65 -0.7
4,868,236 - Pf6N2E2_4184 0.65 +1.4
4,868,236 - Pf6N2E2_4184 0.65 +0.2
4,868,236 - Pf6N2E2_4184 0.65 -0.2
4,868,236 - Pf6N2E2_4184 0.65 +0.1
4,868,247 + Pf6N2E2_4184 0.68 +0.5
4,868,280 + Pf6N2E2_4184 0.77 +0.0
4,868,280 + Pf6N2E2_4184 0.77 -0.1
4,868,280 + Pf6N2E2_4184 0.77 +0.5
4,868,280 + Pf6N2E2_4184 0.77 -0.5
4,868,280 + Pf6N2E2_4184 0.77 -0.5
4,868,280 + Pf6N2E2_4184 0.77 +0.6
4,868,280 + Pf6N2E2_4184 0.77 +0.1
4,868,280 + Pf6N2E2_4184 0.77 +0.0
4,868,280 + Pf6N2E2_4184 0.77 +1.4
4,868,280 + Pf6N2E2_4184 0.77 -0.2
4,868,280 + Pf6N2E2_4184 0.77 -0.1
4,868,281 - Pf6N2E2_4184 0.78 +0.6
4,868,281 - Pf6N2E2_4184 0.78 +0.4
4,868,281 - Pf6N2E2_4184 0.78 -1.0
4,868,281 - Pf6N2E2_4184 0.78 +0.4
4,868,281 - Pf6N2E2_4184 0.78 +0.3
4,868,281 - Pf6N2E2_4184 0.78 +0.9
4,868,281 - Pf6N2E2_4184 0.78 +0.4
4,868,281 - Pf6N2E2_4184 0.78 +0.2
4,868,281 - Pf6N2E2_4184 0.78 -0.7
4,868,281 - Pf6N2E2_4184 0.78 -0.3
4,868,281 - Pf6N2E2_4184 0.78 +0.4
4,868,281 - Pf6N2E2_4184 0.78 +0.2
4,868,344 + +1.4
4,868,345 - +0.6
4,868,386 + -0.5
4,868,386 + -1.1
4,868,397 - -1.0
4,868,397 - -1.3
4,868,467 + -0.5
4,868,467 + +0.4
4,868,467 + +0.5
4,868,467 + -1.4
4,868,467 + -0.1
4,868,467 + +0.2
4,868,467 + -0.3
4,868,467 + -0.9
4,868,467 + -0.0
4,868,467 + -1.3
4,868,467 + -0.7
4,868,467 + +0.0
4,868,467 + +0.5
4,868,468 - +0.5
4,868,468 - +1.8
4,868,468 - +0.6
4,868,468 - +0.2
4,868,468 - -0.1
4,868,468 - +0.5
4,868,468 - +0.2
4,868,468 - -0.2
4,868,468 - +1.7
4,868,468 - -0.7
4,868,489 + +0.6
4,868,489 + -0.6
4,868,499 + -0.3
4,868,499 + -0.5
4,868,500 - +0.0
4,868,536 + +0.2
4,868,537 - +1.1
4,868,537 - +0.3
4,868,537 - -0.4
4,868,537 - +0.3
4,868,543 + +0.4
4,868,543 + +2.4
4,868,544 - -0.5
4,868,553 + -0.0
4,868,553 + +0.6
4,868,554 - +1.6
4,868,554 - -0.5
4,868,742 + Pf6N2E2_4185 0.13 +0.4
4,868,742 + Pf6N2E2_4185 0.13 -0.8
4,868,742 + Pf6N2E2_4185 0.13 -0.2
4,868,747 + Pf6N2E2_4185 0.14 -0.2
4,868,747 + Pf6N2E2_4185 0.14 +0.7
4,868,748 - Pf6N2E2_4185 0.14 -1.8
4,868,748 - Pf6N2E2_4185 0.14 +0.1
4,868,748 - Pf6N2E2_4185 0.14 -1.6

Or see this region's nucleotide sequence