Experiment: Cobalt chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3915 and Pf6N2E2_3916 are separated by 132 nucleotides Pf6N2E2_3916 and Pf6N2E2_3917 are separated by 12 nucleotides
Pf6N2E2_3915 - Transcriptional regulator, LysR family, at 4,550,214 to 4,551,104
_3915
Pf6N2E2_3916 - Short-chain dehydrogenase/reductase SDR, at 4,551,237 to 4,551,977
_3916
Pf6N2E2_3917 - High-affinity choline uptake protein BetT, at 4,551,990 to 4,553,993
_3917
Position (kb)
4551
4552 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4550.428 kb on + strand, within Pf6N2E2_3915 at 4550.469 kb on + strand, within Pf6N2E2_3915 at 4550.510 kb on - strand, within Pf6N2E2_3915 at 4550.536 kb on + strand, within Pf6N2E2_3915 at 4550.536 kb on + strand, within Pf6N2E2_3915 at 4550.536 kb on + strand, within Pf6N2E2_3915 at 4550.536 kb on + strand, within Pf6N2E2_3915 at 4550.536 kb on + strand, within Pf6N2E2_3915 at 4550.537 kb on - strand, within Pf6N2E2_3915 at 4550.537 kb on - strand, within Pf6N2E2_3915 at 4550.537 kb on - strand, within Pf6N2E2_3915 at 4550.537 kb on - strand, within Pf6N2E2_3915 at 4550.537 kb on - strand, within Pf6N2E2_3915 at 4550.537 kb on - strand, within Pf6N2E2_3915 at 4550.587 kb on + strand, within Pf6N2E2_3915 at 4550.672 kb on + strand, within Pf6N2E2_3915 at 4550.748 kb on + strand, within Pf6N2E2_3915 at 4550.748 kb on + strand, within Pf6N2E2_3915 at 4550.748 kb on + strand, within Pf6N2E2_3915 at 4550.748 kb on + strand, within Pf6N2E2_3915 at 4550.748 kb on + strand, within Pf6N2E2_3915 at 4550.749 kb on - strand, within Pf6N2E2_3915 at 4550.749 kb on - strand, within Pf6N2E2_3915 at 4550.749 kb on - strand, within Pf6N2E2_3915 at 4550.749 kb on - strand, within Pf6N2E2_3915 at 4550.749 kb on - strand, within Pf6N2E2_3915 at 4550.749 kb on - strand, within Pf6N2E2_3915 at 4550.798 kb on - strand, within Pf6N2E2_3915 at 4550.911 kb on + strand, within Pf6N2E2_3915 at 4550.911 kb on + strand, within Pf6N2E2_3915 at 4550.911 kb on + strand, within Pf6N2E2_3915 at 4550.911 kb on + strand, within Pf6N2E2_3915 at 4550.912 kb on - strand, within Pf6N2E2_3915 at 4551.023 kb on + strand at 4551.023 kb on + strand at 4551.023 kb on + strand at 4551.023 kb on + strand at 4551.024 kb on - strand at 4551.024 kb on - strand at 4551.024 kb on - strand at 4551.024 kb on - strand at 4551.064 kb on + strand at 4551.064 kb on + strand at 4551.064 kb on + strand at 4551.064 kb on + strand at 4551.064 kb on + strand at 4551.064 kb on + strand at 4551.065 kb on - strand at 4551.065 kb on - strand at 4551.065 kb on - strand at 4551.065 kb on - strand at 4551.065 kb on - strand at 4551.065 kb on - strand at 4551.065 kb on - strand at 4551.065 kb on - strand at 4551.067 kb on - strand at 4551.161 kb on + strand at 4551.165 kb on + strand at 4551.165 kb on + strand at 4551.177 kb on + strand at 4551.178 kb on - strand at 4551.345 kb on + strand, within Pf6N2E2_3916 at 4551.345 kb on + strand, within Pf6N2E2_3916 at 4551.345 kb on + strand, within Pf6N2E2_3916 at 4551.345 kb on + strand, within Pf6N2E2_3916 at 4551.696 kb on + strand, within Pf6N2E2_3916 at 4551.696 kb on + strand, within Pf6N2E2_3916 at 4551.696 kb on + strand, within Pf6N2E2_3916 at 4551.696 kb on + strand, within Pf6N2E2_3916 at 4551.697 kb on - strand, within Pf6N2E2_3916 at 4551.846 kb on + strand, within Pf6N2E2_3916 at 4551.847 kb on - strand, within Pf6N2E2_3916 at 4552.027 kb on + strand at 4552.027 kb on + strand at 4552.066 kb on + strand at 4552.066 kb on + strand at 4552.067 kb on - strand at 4552.081 kb on + strand at 4552.081 kb on + strand at 4552.120 kb on + strand at 4552.121 kb on - strand at 4552.124 kb on - strand at 4552.124 kb on - strand at 4552.124 kb on - strand at 4552.183 kb on + strand at 4552.204 kb on + strand, within Pf6N2E2_3917 at 4552.204 kb on + strand, within Pf6N2E2_3917 at 4552.205 kb on - strand, within Pf6N2E2_3917 at 4552.483 kb on + strand, within Pf6N2E2_3917 at 4552.483 kb on + strand, within Pf6N2E2_3917 at 4552.484 kb on - strand, within Pf6N2E2_3917 at 4552.484 kb on - strand, within Pf6N2E2_3917 at 4552.484 kb on - strand, within Pf6N2E2_3917 at 4552.778 kb on - strand, within Pf6N2E2_3917 at 4552.795 kb on + strand, within Pf6N2E2_3917 at 4552.795 kb on + strand, within Pf6N2E2_3917 at 4552.796 kb on - strand, within Pf6N2E2_3917 at 4552.796 kb on - strand, within Pf6N2E2_3917
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM remove 4,550,428 + Pf6N2E2_3915 0.24 -0.2 4,550,469 + Pf6N2E2_3915 0.29 -0.1 4,550,510 - Pf6N2E2_3915 0.33 +1.2 4,550,536 + Pf6N2E2_3915 0.36 +2.1 4,550,536 + Pf6N2E2_3915 0.36 -1.7 4,550,536 + Pf6N2E2_3915 0.36 -2.8 4,550,536 + Pf6N2E2_3915 0.36 -0.9 4,550,536 + Pf6N2E2_3915 0.36 -0.4 4,550,537 - Pf6N2E2_3915 0.36 -0.4 4,550,537 - Pf6N2E2_3915 0.36 -0.0 4,550,537 - Pf6N2E2_3915 0.36 +1.3 4,550,537 - Pf6N2E2_3915 0.36 -0.5 4,550,537 - Pf6N2E2_3915 0.36 -0.4 4,550,537 - Pf6N2E2_3915 0.36 +1.5 4,550,587 + Pf6N2E2_3915 0.42 +0.1 4,550,672 + Pf6N2E2_3915 0.51 +0.5 4,550,748 + Pf6N2E2_3915 0.60 +1.4 4,550,748 + Pf6N2E2_3915 0.60 -0.8 4,550,748 + Pf6N2E2_3915 0.60 +0.3 4,550,748 + Pf6N2E2_3915 0.60 +0.0 4,550,748 + Pf6N2E2_3915 0.60 -1.3 4,550,749 - Pf6N2E2_3915 0.60 -0.5 4,550,749 - Pf6N2E2_3915 0.60 -0.4 4,550,749 - Pf6N2E2_3915 0.60 +0.7 4,550,749 - Pf6N2E2_3915 0.60 -0.6 4,550,749 - Pf6N2E2_3915 0.60 -1.5 4,550,749 - Pf6N2E2_3915 0.60 +0.8 4,550,798 - Pf6N2E2_3915 0.66 +0.1 4,550,911 + Pf6N2E2_3915 0.78 -0.2 4,550,911 + Pf6N2E2_3915 0.78 +0.4 4,550,911 + Pf6N2E2_3915 0.78 +0.7 4,550,911 + Pf6N2E2_3915 0.78 +1.3 4,550,912 - Pf6N2E2_3915 0.78 -0.7 4,551,023 + -0.0 4,551,023 + +0.5 4,551,023 + +0.7 4,551,023 + +0.2 4,551,024 - -0.8 4,551,024 - +0.3 4,551,024 - +0.6 4,551,024 - +0.3 4,551,064 + +0.2 4,551,064 + -0.5 4,551,064 + -0.5 4,551,064 + +0.5 4,551,064 + -2.1 4,551,064 + +0.8 4,551,065 - +0.7 4,551,065 - +0.3 4,551,065 - +0.6 4,551,065 - +0.3 4,551,065 - -0.0 4,551,065 - -0.1 4,551,065 - +0.8 4,551,065 - +0.3 4,551,067 - -0.3 4,551,161 + +0.7 4,551,165 + +0.8 4,551,165 + +1.0 4,551,177 + -0.0 4,551,178 - -0.7 4,551,345 + Pf6N2E2_3916 0.15 -2.1 4,551,345 + Pf6N2E2_3916 0.15 -0.2 4,551,345 + Pf6N2E2_3916 0.15 -0.8 4,551,345 + Pf6N2E2_3916 0.15 -0.9 4,551,696 + Pf6N2E2_3916 0.62 -0.1 4,551,696 + Pf6N2E2_3916 0.62 -0.5 4,551,696 + Pf6N2E2_3916 0.62 +0.4 4,551,696 + Pf6N2E2_3916 0.62 +0.6 4,551,697 - Pf6N2E2_3916 0.62 -0.1 4,551,846 + Pf6N2E2_3916 0.82 +0.9 4,551,847 - Pf6N2E2_3916 0.82 -0.1 4,552,027 + +0.8 4,552,027 + +0.6 4,552,066 + +0.3 4,552,066 + +0.0 4,552,067 - +0.3 4,552,081 + +0.4 4,552,081 + +0.5 4,552,120 + +0.6 4,552,121 - +0.3 4,552,124 - -0.2 4,552,124 - -0.3 4,552,124 - +0.9 4,552,183 + -0.2 4,552,204 + Pf6N2E2_3917 0.11 +0.6 4,552,204 + Pf6N2E2_3917 0.11 +0.1 4,552,205 - Pf6N2E2_3917 0.11 +0.4 4,552,483 + Pf6N2E2_3917 0.25 -0.0 4,552,483 + Pf6N2E2_3917 0.25 +0.7 4,552,484 - Pf6N2E2_3917 0.25 +0.2 4,552,484 - Pf6N2E2_3917 0.25 +1.3 4,552,484 - Pf6N2E2_3917 0.25 +3.3 4,552,778 - Pf6N2E2_3917 0.39 -0.2 4,552,795 + Pf6N2E2_3917 0.40 -1.3 4,552,795 + Pf6N2E2_3917 0.40 +0.9 4,552,796 - Pf6N2E2_3917 0.40 +0.2 4,552,796 - Pf6N2E2_3917 0.40 +1.3
Or see this region's nucleotide sequence