Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3805

Experiment: Cobalt chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3804 and Pf6N2E2_3805 are separated by 152 nucleotidesPf6N2E2_3805 and Pf6N2E2_3806 are separated by 925 nucleotides Pf6N2E2_3804 - Cytosine/purine/uracil/thiamine/allantoin permease family protein, at 4,431,750 to 4,433,216 _3804 Pf6N2E2_3805 - Urocanate hydratase (EC 4.2.1.49) (from data), at 4,433,369 to 4,435,057 _3805 Pf6N2E2_3806 - Conserved hypothetical protein (perhaps related to histidine degradation), at 4,435,983 to 4,436,552 _3806 Position (kb) 4433 4434 4435 4436Strain fitness (log2 ratio) -2 -1 0 1at 4432.393 kb on + strand, within Pf6N2E2_3804at 4432.393 kb on + strand, within Pf6N2E2_3804at 4432.393 kb on + strand, within Pf6N2E2_3804at 4432.543 kb on + strand, within Pf6N2E2_3804at 4432.543 kb on + strand, within Pf6N2E2_3804at 4432.682 kb on - strand, within Pf6N2E2_3804at 4432.682 kb on - strand, within Pf6N2E2_3804at 4432.867 kb on + strand, within Pf6N2E2_3804at 4432.867 kb on + strand, within Pf6N2E2_3804at 4432.867 kb on + strand, within Pf6N2E2_3804at 4432.868 kb on - strand, within Pf6N2E2_3804at 4432.906 kb on + strand, within Pf6N2E2_3804at 4432.906 kb on + strand, within Pf6N2E2_3804at 4432.906 kb on + strand, within Pf6N2E2_3804at 4432.907 kb on - strand, within Pf6N2E2_3804at 4433.156 kb on - strandat 4433.156 kb on - strandat 4433.204 kb on + strandat 4433.371 kb on - strandat 4433.483 kb on + strandat 4433.925 kb on + strand, within Pf6N2E2_3805at 4433.925 kb on + strand, within Pf6N2E2_3805at 4433.925 kb on + strand, within Pf6N2E2_3805at 4433.925 kb on + strand, within Pf6N2E2_3805at 4433.925 kb on + strand, within Pf6N2E2_3805at 4433.925 kb on + strand, within Pf6N2E2_3805at 4433.925 kb on + strand, within Pf6N2E2_3805at 4433.925 kb on + strand, within Pf6N2E2_3805at 4433.925 kb on + strand, within Pf6N2E2_3805at 4433.926 kb on - strand, within Pf6N2E2_3805at 4433.926 kb on - strand, within Pf6N2E2_3805at 4433.926 kb on - strand, within Pf6N2E2_3805at 4433.926 kb on - strand, within Pf6N2E2_3805at 4433.926 kb on - strand, within Pf6N2E2_3805at 4433.926 kb on - strand, within Pf6N2E2_3805at 4434.000 kb on + strand, within Pf6N2E2_3805at 4434.000 kb on + strand, within Pf6N2E2_3805at 4434.000 kb on + strand, within Pf6N2E2_3805at 4434.001 kb on - strand, within Pf6N2E2_3805at 4434.001 kb on - strand, within Pf6N2E2_3805at 4434.001 kb on - strand, within Pf6N2E2_3805at 4434.001 kb on - strand, within Pf6N2E2_3805at 4434.079 kb on - strand, within Pf6N2E2_3805at 4434.225 kb on + strand, within Pf6N2E2_3805at 4434.360 kb on + strand, within Pf6N2E2_3805at 4434.361 kb on - strand, within Pf6N2E2_3805at 4434.361 kb on - strand, within Pf6N2E2_3805at 4434.565 kb on - strand, within Pf6N2E2_3805at 4434.597 kb on + strand, within Pf6N2E2_3805at 4434.598 kb on - strand, within Pf6N2E2_3805at 4434.601 kb on + strand, within Pf6N2E2_3805at 4434.631 kb on - strand, within Pf6N2E2_3805at 4434.660 kb on + strand, within Pf6N2E2_3805at 4434.660 kb on + strand, within Pf6N2E2_3805at 4434.660 kb on + strand, within Pf6N2E2_3805at 4434.660 kb on + strand, within Pf6N2E2_3805at 4434.661 kb on - strand, within Pf6N2E2_3805at 4434.661 kb on - strand, within Pf6N2E2_3805at 4434.852 kb on + strand, within Pf6N2E2_3805at 4434.852 kb on + strand, within Pf6N2E2_3805at 4434.881 kb on + strand, within Pf6N2E2_3805at 4434.881 kb on + strand, within Pf6N2E2_3805at 4434.881 kb on + strand, within Pf6N2E2_3805at 4434.882 kb on - strand, within Pf6N2E2_3805at 4434.882 kb on - strand, within Pf6N2E2_3805at 4434.882 kb on - strand, within Pf6N2E2_3805at 4434.882 kb on - strand, within Pf6N2E2_3805at 4434.891 kb on + strandat 4434.892 kb on - strandat 4435.132 kb on - strandat 4435.144 kb on + strandat 4435.144 kb on + strandat 4435.144 kb on + strandat 4435.144 kb on + strandat 4435.144 kb on + strandat 4435.145 kb on - strandat 4435.150 kb on + strandat 4435.151 kb on - strandat 4435.151 kb on - strandat 4435.151 kb on - strandat 4435.159 kb on - strandat 4435.164 kb on + strandat 4435.176 kb on + strandat 4435.587 kb on - strandat 4435.587 kb on - strandat 4435.902 kb on + strandat 4435.902 kb on + strandat 4435.902 kb on + strandat 4435.902 kb on + strandat 4435.902 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
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4,432,393 + Pf6N2E2_3804 0.44 -0.3
4,432,393 + Pf6N2E2_3804 0.44 -0.7
4,432,393 + Pf6N2E2_3804 0.44 -1.0
4,432,543 + Pf6N2E2_3804 0.54 +1.3
4,432,543 + Pf6N2E2_3804 0.54 -0.8
4,432,682 - Pf6N2E2_3804 0.64 +0.9
4,432,682 - Pf6N2E2_3804 0.64 +0.3
4,432,867 + Pf6N2E2_3804 0.76 -0.7
4,432,867 + Pf6N2E2_3804 0.76 -0.9
4,432,867 + Pf6N2E2_3804 0.76 -0.3
4,432,868 - Pf6N2E2_3804 0.76 -0.4
4,432,906 + Pf6N2E2_3804 0.79 -0.7
4,432,906 + Pf6N2E2_3804 0.79 +0.2
4,432,906 + Pf6N2E2_3804 0.79 +0.3
4,432,907 - Pf6N2E2_3804 0.79 -0.0
4,433,156 - -0.6
4,433,156 - +0.3
4,433,204 + -2.2
4,433,371 - -0.3
4,433,483 + -0.7
4,433,925 + Pf6N2E2_3805 0.33 +0.1
4,433,925 + Pf6N2E2_3805 0.33 +1.1
4,433,925 + Pf6N2E2_3805 0.33 -0.7
4,433,925 + Pf6N2E2_3805 0.33 -1.0
4,433,925 + Pf6N2E2_3805 0.33 -1.4
4,433,925 + Pf6N2E2_3805 0.33 -0.7
4,433,925 + Pf6N2E2_3805 0.33 +0.3
4,433,925 + Pf6N2E2_3805 0.33 +1.2
4,433,925 + Pf6N2E2_3805 0.33 -1.4
4,433,926 - Pf6N2E2_3805 0.33 +0.3
4,433,926 - Pf6N2E2_3805 0.33 +1.4
4,433,926 - Pf6N2E2_3805 0.33 +0.5
4,433,926 - Pf6N2E2_3805 0.33 -0.5
4,433,926 - Pf6N2E2_3805 0.33 +0.2
4,433,926 - Pf6N2E2_3805 0.33 +1.7
4,434,000 + Pf6N2E2_3805 0.37 +0.2
4,434,000 + Pf6N2E2_3805 0.37 +0.2
4,434,000 + Pf6N2E2_3805 0.37 -0.8
4,434,001 - Pf6N2E2_3805 0.37 -0.2
4,434,001 - Pf6N2E2_3805 0.37 +0.7
4,434,001 - Pf6N2E2_3805 0.37 -0.6
4,434,001 - Pf6N2E2_3805 0.37 -1.0
4,434,079 - Pf6N2E2_3805 0.42 +1.2
4,434,225 + Pf6N2E2_3805 0.51 +0.6
4,434,360 + Pf6N2E2_3805 0.59 -0.9
4,434,361 - Pf6N2E2_3805 0.59 +1.1
4,434,361 - Pf6N2E2_3805 0.59 +1.2
4,434,565 - Pf6N2E2_3805 0.71 +0.0
4,434,597 + Pf6N2E2_3805 0.73 +0.1
4,434,598 - Pf6N2E2_3805 0.73 +1.1
4,434,601 + Pf6N2E2_3805 0.73 +0.4
4,434,631 - Pf6N2E2_3805 0.75 +0.8
4,434,660 + Pf6N2E2_3805 0.76 -0.3
4,434,660 + Pf6N2E2_3805 0.76 +0.5
4,434,660 + Pf6N2E2_3805 0.76 +1.0
4,434,660 + Pf6N2E2_3805 0.76 -0.1
4,434,661 - Pf6N2E2_3805 0.76 +0.5
4,434,661 - Pf6N2E2_3805 0.76 +0.1
4,434,852 + Pf6N2E2_3805 0.88 +0.2
4,434,852 + Pf6N2E2_3805 0.88 +1.5
4,434,881 + Pf6N2E2_3805 0.90 +1.0
4,434,881 + Pf6N2E2_3805 0.90 +0.7
4,434,881 + Pf6N2E2_3805 0.90 +0.3
4,434,882 - Pf6N2E2_3805 0.90 -0.2
4,434,882 - Pf6N2E2_3805 0.90 +1.0
4,434,882 - Pf6N2E2_3805 0.90 +0.3
4,434,882 - Pf6N2E2_3805 0.90 +0.2
4,434,891 + +1.0
4,434,892 - -1.3
4,435,132 - +0.8
4,435,144 + -0.1
4,435,144 + +0.9
4,435,144 + +0.2
4,435,144 + -0.0
4,435,144 + +1.1
4,435,145 - +0.4
4,435,150 + +0.5
4,435,151 - -0.3
4,435,151 - +0.5
4,435,151 - +1.3
4,435,159 - -0.2
4,435,164 + -1.1
4,435,176 + -0.0
4,435,587 - -0.1
4,435,587 - -1.4
4,435,902 + +1.3
4,435,902 + +0.2
4,435,902 + +0.7
4,435,902 + +0.7
4,435,902 + +0.2

Or see this region's nucleotide sequence