Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3512

Experiment: Cobalt chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3510 and Pf6N2E2_3511 are separated by 47 nucleotidesPf6N2E2_3511 and Pf6N2E2_3512 are separated by 17 nucleotidesPf6N2E2_3512 and Pf6N2E2_3513 are separated by 81 nucleotides Pf6N2E2_3510 - 3-dehydroquinate dehydratase II (EC 4.2.1.10), at 4,092,370 to 4,092,822 _3510 Pf6N2E2_3511 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 4,092,870 to 4,093,334 _3511 Pf6N2E2_3512 - Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14), at 4,093,352 to 4,094,707 _3512 Pf6N2E2_3513 - hypothetical protein, at 4,094,789 to 4,098,757 _3513 Position (kb) 4093 4094 4095Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4092.354 kb on + strandat 4092.791 kb on + strandat 4094.848 kb on + strandat 4094.875 kb on - strandat 4094.875 kb on - strandat 4094.975 kb on + strandat 4094.976 kb on - strandat 4094.976 kb on - strandat 4094.976 kb on - strandat 4094.976 kb on - strandat 4094.976 kb on - strandat 4094.979 kb on + strandat 4094.979 kb on + strandat 4094.979 kb on + strandat 4094.979 kb on + strandat 4094.979 kb on + strandat 4094.979 kb on + strandat 4094.980 kb on - strandat 4094.980 kb on - strandat 4094.980 kb on - strandat 4094.980 kb on - strandat 4094.980 kb on - strandat 4094.980 kb on - strandat 4094.980 kb on - strandat 4094.980 kb on - strandat 4095.022 kb on + strandat 4095.022 kb on + strandat 4095.023 kb on - strandat 4095.023 kb on - strandat 4095.023 kb on - strandat 4095.023 kb on - strandat 4095.023 kb on - strandat 4095.035 kb on + strandat 4095.035 kb on + strandat 4095.035 kb on + strandat 4095.035 kb on + strandat 4095.035 kb on + strandat 4095.035 kb on + strandat 4095.035 kb on + strandat 4095.035 kb on + strandat 4095.035 kb on + strandat 4095.035 kb on + strandat 4095.036 kb on - strandat 4095.036 kb on - strandat 4095.036 kb on - strandat 4095.036 kb on - strandat 4095.036 kb on - strandat 4095.036 kb on - strandat 4095.036 kb on - strandat 4095.036 kb on - strandat 4095.036 kb on - strandat 4095.036 kb on - strandat 4095.036 kb on - strandat 4095.036 kb on - strandat 4095.036 kb on - strandat 4095.036 kb on - strandat 4095.036 kb on - strandat 4095.036 kb on - strandat 4095.036 kb on - strandat 4095.036 kb on - strandat 4095.036 kb on - strandat 4095.058 kb on + strandat 4095.078 kb on + strandat 4095.078 kb on + strandat 4095.079 kb on - strandat 4095.079 kb on - strandat 4095.079 kb on - strandat 4095.079 kb on - strandat 4095.191 kb on - strand, within Pf6N2E2_3513at 4095.303 kb on + strand, within Pf6N2E2_3513at 4095.303 kb on + strand, within Pf6N2E2_3513at 4095.303 kb on + strand, within Pf6N2E2_3513at 4095.304 kb on - strand, within Pf6N2E2_3513at 4095.304 kb on - strand, within Pf6N2E2_3513at 4095.348 kb on + strand, within Pf6N2E2_3513at 4095.348 kb on + strand, within Pf6N2E2_3513at 4095.348 kb on + strand, within Pf6N2E2_3513at 4095.348 kb on + strand, within Pf6N2E2_3513at 4095.348 kb on + strand, within Pf6N2E2_3513at 4095.349 kb on - strand, within Pf6N2E2_3513at 4095.349 kb on - strand, within Pf6N2E2_3513at 4095.349 kb on - strand, within Pf6N2E2_3513at 4095.349 kb on - strand, within Pf6N2E2_3513at 4095.413 kb on + strand, within Pf6N2E2_3513at 4095.413 kb on + strand, within Pf6N2E2_3513at 4095.413 kb on + strand, within Pf6N2E2_3513at 4095.414 kb on - strand, within Pf6N2E2_3513at 4095.414 kb on - strand, within Pf6N2E2_3513at 4095.414 kb on - strand, within Pf6N2E2_3513at 4095.414 kb on - strand, within Pf6N2E2_3513at 4095.414 kb on - strand, within Pf6N2E2_3513at 4095.414 kb on - strand, within Pf6N2E2_3513at 4095.414 kb on - strand, within Pf6N2E2_3513at 4095.476 kb on + strand, within Pf6N2E2_3513at 4095.476 kb on + strand, within Pf6N2E2_3513at 4095.476 kb on + strand, within Pf6N2E2_3513at 4095.476 kb on + strand, within Pf6N2E2_3513at 4095.476 kb on + strand, within Pf6N2E2_3513at 4095.476 kb on + strand, within Pf6N2E2_3513at 4095.476 kb on + strand, within Pf6N2E2_3513at 4095.476 kb on + strand, within Pf6N2E2_3513at 4095.477 kb on - strand, within Pf6N2E2_3513at 4095.477 kb on - strand, within Pf6N2E2_3513at 4095.477 kb on - strand, within Pf6N2E2_3513at 4095.477 kb on - strand, within Pf6N2E2_3513at 4095.477 kb on - strand, within Pf6N2E2_3513at 4095.477 kb on - strand, within Pf6N2E2_3513at 4095.477 kb on - strand, within Pf6N2E2_3513at 4095.477 kb on - strand, within Pf6N2E2_3513at 4095.477 kb on - strand, within Pf6N2E2_3513at 4095.477 kb on - strand, within Pf6N2E2_3513at 4095.477 kb on - strand, within Pf6N2E2_3513at 4095.555 kb on + strand, within Pf6N2E2_3513at 4095.555 kb on + strand, within Pf6N2E2_3513at 4095.555 kb on + strand, within Pf6N2E2_3513at 4095.555 kb on + strand, within Pf6N2E2_3513at 4095.556 kb on - strand, within Pf6N2E2_3513at 4095.556 kb on - strand, within Pf6N2E2_3513at 4095.556 kb on - strand, within Pf6N2E2_3513at 4095.556 kb on - strand, within Pf6N2E2_3513at 4095.556 kb on - strand, within Pf6N2E2_3513at 4095.556 kb on - strand, within Pf6N2E2_3513at 4095.556 kb on - strand, within Pf6N2E2_3513at 4095.556 kb on - strand, within Pf6N2E2_3513at 4095.624 kb on + strand, within Pf6N2E2_3513at 4095.624 kb on + strand, within Pf6N2E2_3513at 4095.625 kb on - strand, within Pf6N2E2_3513at 4095.627 kb on + strand, within Pf6N2E2_3513at 4095.627 kb on + strand, within Pf6N2E2_3513at 4095.627 kb on + strand, within Pf6N2E2_3513at 4095.627 kb on + strand, within Pf6N2E2_3513at 4095.628 kb on - strand, within Pf6N2E2_3513at 4095.628 kb on - strand, within Pf6N2E2_3513at 4095.628 kb on - strand, within Pf6N2E2_3513at 4095.628 kb on - strand, within Pf6N2E2_3513at 4095.628 kb on - strand, within Pf6N2E2_3513at 4095.628 kb on - strand, within Pf6N2E2_3513at 4095.638 kb on - strand, within Pf6N2E2_3513at 4095.648 kb on + strand, within Pf6N2E2_3513at 4095.648 kb on + strand, within Pf6N2E2_3513at 4095.648 kb on + strand, within Pf6N2E2_3513at 4095.648 kb on + strand, within Pf6N2E2_3513at 4095.648 kb on + strand, within Pf6N2E2_3513at 4095.648 kb on + strand, within Pf6N2E2_3513at 4095.649 kb on - strand, within Pf6N2E2_3513at 4095.649 kb on - strand, within Pf6N2E2_3513at 4095.649 kb on - strand, within Pf6N2E2_3513at 4095.649 kb on - strand, within Pf6N2E2_3513at 4095.649 kb on - strand, within Pf6N2E2_3513at 4095.651 kb on + strand, within Pf6N2E2_3513at 4095.651 kb on + strand, within Pf6N2E2_3513at 4095.651 kb on + strand, within Pf6N2E2_3513at 4095.651 kb on + strand, within Pf6N2E2_3513at 4095.651 kb on + strand, within Pf6N2E2_3513at 4095.651 kb on + strand, within Pf6N2E2_3513at 4095.651 kb on + strand, within Pf6N2E2_3513at 4095.652 kb on - strand, within Pf6N2E2_3513at 4095.652 kb on - strand, within Pf6N2E2_3513at 4095.652 kb on - strand, within Pf6N2E2_3513at 4095.652 kb on - strand, within Pf6N2E2_3513at 4095.652 kb on - strand, within Pf6N2E2_3513at 4095.652 kb on - strand, within Pf6N2E2_3513at 4095.652 kb on - strand, within Pf6N2E2_3513at 4095.652 kb on - strand, within Pf6N2E2_3513at 4095.655 kb on + strand, within Pf6N2E2_3513at 4095.655 kb on + strand, within Pf6N2E2_3513at 4095.655 kb on + strand, within Pf6N2E2_3513at 4095.655 kb on + strand, within Pf6N2E2_3513at 4095.655 kb on + strand, within Pf6N2E2_3513at 4095.656 kb on - strand, within Pf6N2E2_3513at 4095.656 kb on - strand, within Pf6N2E2_3513at 4095.656 kb on - strand, within Pf6N2E2_3513at 4095.656 kb on - strand, within Pf6N2E2_3513at 4095.656 kb on - strand, within Pf6N2E2_3513at 4095.656 kb on - strand, within Pf6N2E2_3513at 4095.656 kb on - strand, within Pf6N2E2_3513at 4095.690 kb on + strand, within Pf6N2E2_3513at 4095.690 kb on + strand, within Pf6N2E2_3513at 4095.691 kb on - strand, within Pf6N2E2_3513at 4095.691 kb on - strand, within Pf6N2E2_3513at 4095.691 kb on - strand, within Pf6N2E2_3513at 4095.691 kb on - strand, within Pf6N2E2_3513at 4095.706 kb on + strand, within Pf6N2E2_3513at 4095.707 kb on - strand, within Pf6N2E2_3513at 4095.707 kb on - strand, within Pf6N2E2_3513at 4095.707 kb on - strand, within Pf6N2E2_3513

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
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4,092,354 + -1.6
4,092,791 + -0.9
4,094,848 + -1.0
4,094,875 - -0.9
4,094,875 - -2.0
4,094,975 + -0.3
4,094,976 - +0.5
4,094,976 - +0.6
4,094,976 - +0.2
4,094,976 - -0.2
4,094,976 - +0.1
4,094,979 + -0.5
4,094,979 + -0.1
4,094,979 + +0.4
4,094,979 + -0.6
4,094,979 + +0.1
4,094,979 + -1.2
4,094,980 - +0.6
4,094,980 - +0.3
4,094,980 - +0.5
4,094,980 - -0.1
4,094,980 - -0.3
4,094,980 - +0.0
4,094,980 - -0.0
4,094,980 - +0.8
4,095,022 + +1.3
4,095,022 + +0.8
4,095,023 - +0.4
4,095,023 - -0.0
4,095,023 - -1.2
4,095,023 - +0.5
4,095,023 - +0.6
4,095,035 + +1.1
4,095,035 + +1.1
4,095,035 + -1.4
4,095,035 + +0.1
4,095,035 + +0.6
4,095,035 + +2.7
4,095,035 + +0.1
4,095,035 + +1.7
4,095,035 + -0.0
4,095,035 + +0.3
4,095,036 - +0.9
4,095,036 - -0.5
4,095,036 - +1.0
4,095,036 - -0.9
4,095,036 - +0.5
4,095,036 - +0.4
4,095,036 - -0.9
4,095,036 - -1.1
4,095,036 - +1.5
4,095,036 - +1.0
4,095,036 - -0.1
4,095,036 - -0.2
4,095,036 - +0.5
4,095,036 - +0.0
4,095,036 - +1.2
4,095,036 - +0.6
4,095,036 - -0.1
4,095,036 - -1.1
4,095,036 - +0.1
4,095,058 + +0.1
4,095,078 + -0.2
4,095,078 + -0.5
4,095,079 - -0.1
4,095,079 - -0.0
4,095,079 - +0.1
4,095,079 - +0.6
4,095,191 - Pf6N2E2_3513 0.10 -0.5
4,095,303 + Pf6N2E2_3513 0.13 -0.9
4,095,303 + Pf6N2E2_3513 0.13 -0.4
4,095,303 + Pf6N2E2_3513 0.13 -0.6
4,095,304 - Pf6N2E2_3513 0.13 +0.3
4,095,304 - Pf6N2E2_3513 0.13 -1.5
4,095,348 + Pf6N2E2_3513 0.14 -0.2
4,095,348 + Pf6N2E2_3513 0.14 +0.8
4,095,348 + Pf6N2E2_3513 0.14 +0.0
4,095,348 + Pf6N2E2_3513 0.14 -0.4
4,095,348 + Pf6N2E2_3513 0.14 -0.4
4,095,349 - Pf6N2E2_3513 0.14 -0.3
4,095,349 - Pf6N2E2_3513 0.14 -0.0
4,095,349 - Pf6N2E2_3513 0.14 +0.8
4,095,349 - Pf6N2E2_3513 0.14 -0.2
4,095,413 + Pf6N2E2_3513 0.16 +0.2
4,095,413 + Pf6N2E2_3513 0.16 -1.4
4,095,413 + Pf6N2E2_3513 0.16 +1.1
4,095,414 - Pf6N2E2_3513 0.16 -0.2
4,095,414 - Pf6N2E2_3513 0.16 +0.7
4,095,414 - Pf6N2E2_3513 0.16 +1.1
4,095,414 - Pf6N2E2_3513 0.16 +0.7
4,095,414 - Pf6N2E2_3513 0.16 +0.8
4,095,414 - Pf6N2E2_3513 0.16 +0.5
4,095,414 - Pf6N2E2_3513 0.16 -0.7
4,095,476 + Pf6N2E2_3513 0.17 -2.2
4,095,476 + Pf6N2E2_3513 0.17 +0.5
4,095,476 + Pf6N2E2_3513 0.17 +1.2
4,095,476 + Pf6N2E2_3513 0.17 +1.1
4,095,476 + Pf6N2E2_3513 0.17 +0.8
4,095,476 + Pf6N2E2_3513 0.17 -0.1
4,095,476 + Pf6N2E2_3513 0.17 -3.0
4,095,476 + Pf6N2E2_3513 0.17 -0.2
4,095,477 - Pf6N2E2_3513 0.17 -0.0
4,095,477 - Pf6N2E2_3513 0.17 -0.2
4,095,477 - Pf6N2E2_3513 0.17 -0.1
4,095,477 - Pf6N2E2_3513 0.17 -1.2
4,095,477 - Pf6N2E2_3513 0.17 -0.1
4,095,477 - Pf6N2E2_3513 0.17 +0.8
4,095,477 - Pf6N2E2_3513 0.17 -0.0
4,095,477 - Pf6N2E2_3513 0.17 +0.3
4,095,477 - Pf6N2E2_3513 0.17 -0.5
4,095,477 - Pf6N2E2_3513 0.17 -1.4
4,095,477 - Pf6N2E2_3513 0.17 +2.3
4,095,555 + Pf6N2E2_3513 0.19 +0.1
4,095,555 + Pf6N2E2_3513 0.19 -0.5
4,095,555 + Pf6N2E2_3513 0.19 +0.9
4,095,555 + Pf6N2E2_3513 0.19 -0.9
4,095,556 - Pf6N2E2_3513 0.19 -0.6
4,095,556 - Pf6N2E2_3513 0.19 +0.1
4,095,556 - Pf6N2E2_3513 0.19 -0.1
4,095,556 - Pf6N2E2_3513 0.19 +0.8
4,095,556 - Pf6N2E2_3513 0.19 +0.4
4,095,556 - Pf6N2E2_3513 0.19 +0.1
4,095,556 - Pf6N2E2_3513 0.19 -0.7
4,095,556 - Pf6N2E2_3513 0.19 -0.5
4,095,624 + Pf6N2E2_3513 0.21 -0.9
4,095,624 + Pf6N2E2_3513 0.21 +0.7
4,095,625 - Pf6N2E2_3513 0.21 +1.1
4,095,627 + Pf6N2E2_3513 0.21 -0.4
4,095,627 + Pf6N2E2_3513 0.21 -0.4
4,095,627 + Pf6N2E2_3513 0.21 +0.9
4,095,627 + Pf6N2E2_3513 0.21 +0.2
4,095,628 - Pf6N2E2_3513 0.21 -1.5
4,095,628 - Pf6N2E2_3513 0.21 -0.2
4,095,628 - Pf6N2E2_3513 0.21 -0.1
4,095,628 - Pf6N2E2_3513 0.21 +0.2
4,095,628 - Pf6N2E2_3513 0.21 -0.1
4,095,628 - Pf6N2E2_3513 0.21 -0.8
4,095,638 - Pf6N2E2_3513 0.21 +0.9
4,095,648 + Pf6N2E2_3513 0.22 +0.2
4,095,648 + Pf6N2E2_3513 0.22 +0.4
4,095,648 + Pf6N2E2_3513 0.22 +0.4
4,095,648 + Pf6N2E2_3513 0.22 +0.8
4,095,648 + Pf6N2E2_3513 0.22 -0.4
4,095,648 + Pf6N2E2_3513 0.22 -0.7
4,095,649 - Pf6N2E2_3513 0.22 +1.1
4,095,649 - Pf6N2E2_3513 0.22 +0.1
4,095,649 - Pf6N2E2_3513 0.22 -1.0
4,095,649 - Pf6N2E2_3513 0.22 +1.7
4,095,649 - Pf6N2E2_3513 0.22 -0.3
4,095,651 + Pf6N2E2_3513 0.22 +1.0
4,095,651 + Pf6N2E2_3513 0.22 +0.8
4,095,651 + Pf6N2E2_3513 0.22 +0.6
4,095,651 + Pf6N2E2_3513 0.22 -0.7
4,095,651 + Pf6N2E2_3513 0.22 -0.6
4,095,651 + Pf6N2E2_3513 0.22 -0.8
4,095,651 + Pf6N2E2_3513 0.22 -0.0
4,095,652 - Pf6N2E2_3513 0.22 +0.1
4,095,652 - Pf6N2E2_3513 0.22 -0.3
4,095,652 - Pf6N2E2_3513 0.22 +0.2
4,095,652 - Pf6N2E2_3513 0.22 -0.1
4,095,652 - Pf6N2E2_3513 0.22 +1.1
4,095,652 - Pf6N2E2_3513 0.22 +0.8
4,095,652 - Pf6N2E2_3513 0.22 +0.0
4,095,652 - Pf6N2E2_3513 0.22 +0.9
4,095,655 + Pf6N2E2_3513 0.22 +0.1
4,095,655 + Pf6N2E2_3513 0.22 +0.1
4,095,655 + Pf6N2E2_3513 0.22 +0.3
4,095,655 + Pf6N2E2_3513 0.22 -0.7
4,095,655 + Pf6N2E2_3513 0.22 -1.4
4,095,656 - Pf6N2E2_3513 0.22 +0.9
4,095,656 - Pf6N2E2_3513 0.22 -1.0
4,095,656 - Pf6N2E2_3513 0.22 +0.2
4,095,656 - Pf6N2E2_3513 0.22 +0.4
4,095,656 - Pf6N2E2_3513 0.22 +0.4
4,095,656 - Pf6N2E2_3513 0.22 -0.5
4,095,656 - Pf6N2E2_3513 0.22 +0.1
4,095,690 + Pf6N2E2_3513 0.23 +0.8
4,095,690 + Pf6N2E2_3513 0.23 -1.3
4,095,691 - Pf6N2E2_3513 0.23 -0.9
4,095,691 - Pf6N2E2_3513 0.23 +0.5
4,095,691 - Pf6N2E2_3513 0.23 -1.1
4,095,691 - Pf6N2E2_3513 0.23 +0.2
4,095,706 + Pf6N2E2_3513 0.23 -1.1
4,095,707 - Pf6N2E2_3513 0.23 -0.5
4,095,707 - Pf6N2E2_3513 0.23 +1.1
4,095,707 - Pf6N2E2_3513 0.23 +0.2

Or see this region's nucleotide sequence