Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2700

Experiment: Cobalt chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2699 and Pf6N2E2_2700 are separated by 431 nucleotidesPf6N2E2_2700 and Pf6N2E2_2701 are separated by 147 nucleotides Pf6N2E2_2699 - Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO, at 3,192,596 to 3,193,534 _2699 Pf6N2E2_2700 - Cysteine synthase (EC 2.5.1.47), at 3,193,966 to 3,194,940 _2700 Pf6N2E2_2701 - FIG00954689: hypothetical protein, at 3,195,088 to 3,196,155 _2701 Position (kb) 3193 3194 3195Strain fitness (log2 ratio) -2 -1 0 1 2at 3193.189 kb on - strand, within Pf6N2E2_2699at 3193.261 kb on - strand, within Pf6N2E2_2699at 3193.261 kb on - strand, within Pf6N2E2_2699at 3193.261 kb on - strand, within Pf6N2E2_2699at 3193.353 kb on + strand, within Pf6N2E2_2699at 3193.353 kb on + strand, within Pf6N2E2_2699at 3193.353 kb on + strand, within Pf6N2E2_2699at 3193.383 kb on + strand, within Pf6N2E2_2699at 3193.384 kb on - strand, within Pf6N2E2_2699at 3193.396 kb on + strand, within Pf6N2E2_2699at 3193.397 kb on - strand, within Pf6N2E2_2699at 3193.399 kb on - strand, within Pf6N2E2_2699at 3193.399 kb on - strand, within Pf6N2E2_2699at 3193.399 kb on - strand, within Pf6N2E2_2699at 3193.473 kb on + strandat 3193.473 kb on + strandat 3193.575 kb on - strandat 3193.586 kb on + strandat 3193.675 kb on + strandat 3193.675 kb on + strandat 3193.725 kb on + strandat 3193.725 kb on + strandat 3193.726 kb on - strandat 3193.726 kb on - strandat 3193.726 kb on - strandat 3193.726 kb on - strandat 3193.889 kb on + strandat 3193.889 kb on + strandat 3193.890 kb on - strandat 3193.890 kb on - strandat 3194.021 kb on + strandat 3194.021 kb on + strandat 3194.022 kb on - strandat 3194.189 kb on - strand, within Pf6N2E2_2700at 3194.373 kb on - strand, within Pf6N2E2_2700at 3194.373 kb on - strand, within Pf6N2E2_2700at 3194.373 kb on - strand, within Pf6N2E2_2700at 3194.373 kb on - strand, within Pf6N2E2_2700at 3194.522 kb on + strand, within Pf6N2E2_2700at 3194.522 kb on + strand, within Pf6N2E2_2700at 3194.522 kb on + strand, within Pf6N2E2_2700at 3194.522 kb on + strand, within Pf6N2E2_2700at 3194.522 kb on + strand, within Pf6N2E2_2700at 3194.523 kb on - strand, within Pf6N2E2_2700at 3194.523 kb on - strand, within Pf6N2E2_2700at 3194.678 kb on + strand, within Pf6N2E2_2700at 3194.678 kb on + strand, within Pf6N2E2_2700at 3194.679 kb on - strand, within Pf6N2E2_2700at 3194.679 kb on - strand, within Pf6N2E2_2700at 3194.898 kb on + strandat 3194.898 kb on + strandat 3194.899 kb on - strandat 3194.899 kb on - strandat 3194.899 kb on - strandat 3194.899 kb on - strandat 3194.929 kb on + strandat 3194.930 kb on - strandat 3194.931 kb on + strandat 3194.931 kb on + strandat 3194.931 kb on + strandat 3194.931 kb on + strandat 3194.931 kb on + strandat 3194.932 kb on - strandat 3194.932 kb on - strandat 3194.932 kb on - strandat 3194.932 kb on - strandat 3194.932 kb on - strandat 3194.932 kb on - strandat 3194.932 kb on - strandat 3194.968 kb on + strandat 3194.969 kb on - strandat 3194.982 kb on + strandat 3194.982 kb on + strandat 3194.983 kb on - strandat 3195.048 kb on + strandat 3195.048 kb on + strandat 3195.048 kb on + strandat 3195.049 kb on - strandat 3195.049 kb on - strandat 3195.049 kb on - strandat 3195.169 kb on + strandat 3195.170 kb on - strandat 3195.370 kb on + strand, within Pf6N2E2_2701at 3195.610 kb on + strand, within Pf6N2E2_2701at 3195.611 kb on - strand, within Pf6N2E2_2701at 3195.611 kb on - strand, within Pf6N2E2_2701at 3195.802 kb on + strand, within Pf6N2E2_2701at 3195.880 kb on + strand, within Pf6N2E2_2701at 3195.880 kb on + strand, within Pf6N2E2_2701at 3195.881 kb on - strand, within Pf6N2E2_2701

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
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3,193,189 - Pf6N2E2_2699 0.63 +1.1
3,193,261 - Pf6N2E2_2699 0.71 +0.5
3,193,261 - Pf6N2E2_2699 0.71 -0.9
3,193,261 - Pf6N2E2_2699 0.71 -1.3
3,193,353 + Pf6N2E2_2699 0.81 +0.9
3,193,353 + Pf6N2E2_2699 0.81 +0.0
3,193,353 + Pf6N2E2_2699 0.81 -0.1
3,193,383 + Pf6N2E2_2699 0.84 +1.3
3,193,384 - Pf6N2E2_2699 0.84 +0.3
3,193,396 + Pf6N2E2_2699 0.85 +0.1
3,193,397 - Pf6N2E2_2699 0.85 +0.5
3,193,399 - Pf6N2E2_2699 0.86 -0.4
3,193,399 - Pf6N2E2_2699 0.86 -0.8
3,193,399 - Pf6N2E2_2699 0.86 -0.1
3,193,473 + -0.1
3,193,473 + +0.2
3,193,575 - +0.1
3,193,586 + -1.1
3,193,675 + +0.2
3,193,675 + +1.0
3,193,725 + -0.7
3,193,725 + +0.6
3,193,726 - +0.8
3,193,726 - -1.4
3,193,726 - -0.1
3,193,726 - +0.2
3,193,889 + -0.7
3,193,889 + -1.3
3,193,890 - -0.8
3,193,890 - -0.6
3,194,021 + -0.8
3,194,021 + -1.6
3,194,022 - -0.8
3,194,189 - Pf6N2E2_2700 0.23 -0.6
3,194,373 - Pf6N2E2_2700 0.42 -0.3
3,194,373 - Pf6N2E2_2700 0.42 -1.3
3,194,373 - Pf6N2E2_2700 0.42 +0.1
3,194,373 - Pf6N2E2_2700 0.42 -0.9
3,194,522 + Pf6N2E2_2700 0.57 -1.8
3,194,522 + Pf6N2E2_2700 0.57 -0.6
3,194,522 + Pf6N2E2_2700 0.57 -1.4
3,194,522 + Pf6N2E2_2700 0.57 -1.5
3,194,522 + Pf6N2E2_2700 0.57 -0.6
3,194,523 - Pf6N2E2_2700 0.57 -1.1
3,194,523 - Pf6N2E2_2700 0.57 -1.9
3,194,678 + Pf6N2E2_2700 0.73 +1.9
3,194,678 + Pf6N2E2_2700 0.73 +0.5
3,194,679 - Pf6N2E2_2700 0.73 -1.3
3,194,679 - Pf6N2E2_2700 0.73 -0.5
3,194,898 + -0.3
3,194,898 + -0.8
3,194,899 - -1.1
3,194,899 - -0.7
3,194,899 - -0.7
3,194,899 - -1.4
3,194,929 + -2.4
3,194,930 - -0.4
3,194,931 + -1.3
3,194,931 + -1.0
3,194,931 + -0.4
3,194,931 + -0.1
3,194,931 + -0.2
3,194,932 - -0.1
3,194,932 - -1.9
3,194,932 - +0.4
3,194,932 - -0.7
3,194,932 - +0.0
3,194,932 - -0.3
3,194,932 - -2.6
3,194,968 + -0.8
3,194,969 - -0.7
3,194,982 + -2.7
3,194,982 + +0.2
3,194,983 - -0.4
3,195,048 + -0.3
3,195,048 + -1.9
3,195,048 + -1.0
3,195,049 - +0.9
3,195,049 - +0.2
3,195,049 - +1.4
3,195,169 + +0.5
3,195,170 - +2.0
3,195,370 + Pf6N2E2_2701 0.26 +0.3
3,195,610 + Pf6N2E2_2701 0.49 -0.7
3,195,611 - Pf6N2E2_2701 0.49 +0.9
3,195,611 - Pf6N2E2_2701 0.49 -0.3
3,195,802 + Pf6N2E2_2701 0.67 +0.6
3,195,880 + Pf6N2E2_2701 0.74 +1.2
3,195,880 + Pf6N2E2_2701 0.74 -1.3
3,195,881 - Pf6N2E2_2701 0.74 +0.0

Or see this region's nucleotide sequence