Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1928

Experiment: Cobalt chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1927 and Pf6N2E2_1928 are separated by 3 nucleotidesPf6N2E2_1928 and Pf6N2E2_1929 are separated by 112 nucleotides Pf6N2E2_1927 - Capsule biosynthesis protein capA, at 2,281,438 to 2,282,553 _1927 Pf6N2E2_1928 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 2,282,557 to 2,283,333 _1928 Pf6N2E2_1929 - 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), at 2,283,446 to 2,284,780 _1929 Position (kb) 2282 2283 2284Strain fitness (log2 ratio) -2 -1 0 1 2at 2281.585 kb on + strand, within Pf6N2E2_1927at 2281.585 kb on + strand, within Pf6N2E2_1927at 2281.702 kb on + strand, within Pf6N2E2_1927at 2281.703 kb on - strand, within Pf6N2E2_1927at 2281.703 kb on - strand, within Pf6N2E2_1927at 2281.703 kb on - strand, within Pf6N2E2_1927at 2281.840 kb on + strand, within Pf6N2E2_1927at 2281.840 kb on + strand, within Pf6N2E2_1927at 2281.841 kb on - strand, within Pf6N2E2_1927at 2281.841 kb on - strand, within Pf6N2E2_1927at 2281.843 kb on - strand, within Pf6N2E2_1927at 2281.843 kb on - strand, within Pf6N2E2_1927at 2281.851 kb on + strand, within Pf6N2E2_1927at 2281.927 kb on + strand, within Pf6N2E2_1927at 2281.927 kb on + strand, within Pf6N2E2_1927at 2281.928 kb on - strand, within Pf6N2E2_1927at 2282.030 kb on + strand, within Pf6N2E2_1927at 2282.031 kb on - strand, within Pf6N2E2_1927at 2282.136 kb on + strand, within Pf6N2E2_1927at 2282.137 kb on - strand, within Pf6N2E2_1927at 2282.183 kb on - strand, within Pf6N2E2_1927at 2282.183 kb on - strand, within Pf6N2E2_1927at 2282.183 kb on - strand, within Pf6N2E2_1927at 2282.183 kb on - strand, within Pf6N2E2_1927at 2282.184 kb on + strand, within Pf6N2E2_1927at 2282.203 kb on + strand, within Pf6N2E2_1927at 2282.204 kb on - strand, within Pf6N2E2_1927at 2282.340 kb on + strand, within Pf6N2E2_1927at 2282.340 kb on + strand, within Pf6N2E2_1927at 2282.341 kb on - strand, within Pf6N2E2_1927at 2282.341 kb on - strand, within Pf6N2E2_1927at 2282.613 kb on - strandat 2282.771 kb on + strand, within Pf6N2E2_1928at 2282.772 kb on - strand, within Pf6N2E2_1928at 2282.772 kb on - strand, within Pf6N2E2_1928at 2282.772 kb on - strand, within Pf6N2E2_1928at 2282.799 kb on + strand, within Pf6N2E2_1928at 2282.800 kb on - strand, within Pf6N2E2_1928at 2283.028 kb on - strand, within Pf6N2E2_1928at 2283.028 kb on - strand, within Pf6N2E2_1928at 2283.028 kb on - strand, within Pf6N2E2_1928at 2283.065 kb on - strand, within Pf6N2E2_1928at 2283.065 kb on - strand, within Pf6N2E2_1928at 2283.065 kb on - strand, within Pf6N2E2_1928at 2283.167 kb on - strand, within Pf6N2E2_1928at 2283.202 kb on - strand, within Pf6N2E2_1928at 2283.202 kb on - strand, within Pf6N2E2_1928at 2283.202 kb on - strand, within Pf6N2E2_1928at 2283.331 kb on + strandat 2283.345 kb on + strandat 2283.346 kb on - strandat 2283.373 kb on + strandat 2283.380 kb on - strandat 2283.398 kb on + strandat 2283.400 kb on + strandat 2283.400 kb on + strandat 2283.400 kb on + strandat 2283.400 kb on + strandat 2283.400 kb on + strandat 2283.400 kb on + strandat 2283.401 kb on - strandat 2283.401 kb on - strandat 2283.401 kb on - strandat 2283.401 kb on - strandat 2283.727 kb on + strand, within Pf6N2E2_1929at 2283.749 kb on - strand, within Pf6N2E2_1929at 2283.749 kb on - strand, within Pf6N2E2_1929at 2283.867 kb on - strand, within Pf6N2E2_1929at 2283.895 kb on + strand, within Pf6N2E2_1929at 2283.895 kb on + strand, within Pf6N2E2_1929at 2283.911 kb on + strand, within Pf6N2E2_1929at 2283.911 kb on + strand, within Pf6N2E2_1929at 2283.911 kb on + strandat 2283.911 kb on + strand, within Pf6N2E2_1929at 2283.912 kb on - strand, within Pf6N2E2_1929at 2284.091 kb on - strand, within Pf6N2E2_1929

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
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2,281,585 + Pf6N2E2_1927 0.13 -0.0
2,281,585 + Pf6N2E2_1927 0.13 -0.4
2,281,702 + Pf6N2E2_1927 0.24 +1.8
2,281,703 - Pf6N2E2_1927 0.24 -0.4
2,281,703 - Pf6N2E2_1927 0.24 -0.7
2,281,703 - Pf6N2E2_1927 0.24 -0.7
2,281,840 + Pf6N2E2_1927 0.36 +1.6
2,281,840 + Pf6N2E2_1927 0.36 -1.2
2,281,841 - Pf6N2E2_1927 0.36 -2.1
2,281,841 - Pf6N2E2_1927 0.36 -1.7
2,281,843 - Pf6N2E2_1927 0.36 +0.3
2,281,843 - Pf6N2E2_1927 0.36 -0.7
2,281,851 + Pf6N2E2_1927 0.37 +0.7
2,281,927 + Pf6N2E2_1927 0.44 -0.2
2,281,927 + Pf6N2E2_1927 0.44 +0.9
2,281,928 - Pf6N2E2_1927 0.44 +0.9
2,282,030 + Pf6N2E2_1927 0.53 -0.5
2,282,031 - Pf6N2E2_1927 0.53 -0.7
2,282,136 + Pf6N2E2_1927 0.63 -0.4
2,282,137 - Pf6N2E2_1927 0.63 -0.4
2,282,183 - Pf6N2E2_1927 0.67 -0.2
2,282,183 - Pf6N2E2_1927 0.67 -1.6
2,282,183 - Pf6N2E2_1927 0.67 -0.4
2,282,183 - Pf6N2E2_1927 0.67 +0.6
2,282,184 + Pf6N2E2_1927 0.67 -1.0
2,282,203 + Pf6N2E2_1927 0.69 -0.0
2,282,204 - Pf6N2E2_1927 0.69 +0.2
2,282,340 + Pf6N2E2_1927 0.81 -0.3
2,282,340 + Pf6N2E2_1927 0.81 +0.1
2,282,341 - Pf6N2E2_1927 0.81 +1.6
2,282,341 - Pf6N2E2_1927 0.81 +2.3
2,282,613 - +2.6
2,282,771 + Pf6N2E2_1928 0.28 +0.2
2,282,772 - Pf6N2E2_1928 0.28 +0.3
2,282,772 - Pf6N2E2_1928 0.28 +0.6
2,282,772 - Pf6N2E2_1928 0.28 +0.6
2,282,799 + Pf6N2E2_1928 0.31 -0.1
2,282,800 - Pf6N2E2_1928 0.31 +0.7
2,283,028 - Pf6N2E2_1928 0.61 +0.5
2,283,028 - Pf6N2E2_1928 0.61 +0.6
2,283,028 - Pf6N2E2_1928 0.61 -1.4
2,283,065 - Pf6N2E2_1928 0.65 -0.8
2,283,065 - Pf6N2E2_1928 0.65 +1.6
2,283,065 - Pf6N2E2_1928 0.65 +0.7
2,283,167 - Pf6N2E2_1928 0.79 -0.0
2,283,202 - Pf6N2E2_1928 0.83 +0.3
2,283,202 - Pf6N2E2_1928 0.83 +0.4
2,283,202 - Pf6N2E2_1928 0.83 +0.2
2,283,331 + -0.6
2,283,345 + +1.1
2,283,346 - +0.0
2,283,373 + +0.8
2,283,380 - -0.6
2,283,398 + +0.1
2,283,400 + +0.6
2,283,400 + +0.6
2,283,400 + -0.0
2,283,400 + +0.6
2,283,400 + -1.7
2,283,400 + -0.0
2,283,401 - +0.2
2,283,401 - +0.5
2,283,401 - -0.4
2,283,401 - +0.9
2,283,727 + Pf6N2E2_1929 0.21 +1.4
2,283,749 - Pf6N2E2_1929 0.23 -1.2
2,283,749 - Pf6N2E2_1929 0.23 +1.1
2,283,867 - Pf6N2E2_1929 0.32 -0.4
2,283,895 + Pf6N2E2_1929 0.34 +0.1
2,283,895 + Pf6N2E2_1929 0.34 +0.4
2,283,911 + Pf6N2E2_1929 0.35 -0.1
2,283,911 + Pf6N2E2_1929 0.35 -0.1
2,283,911 + +0.9
2,283,911 + Pf6N2E2_1929 0.35 +0.9
2,283,912 - Pf6N2E2_1929 0.35 -0.4
2,284,091 - Pf6N2E2_1929 0.48 +0.6

Or see this region's nucleotide sequence