Experiment: Cobalt chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1927 and Pf6N2E2_1928 are separated by 3 nucleotides Pf6N2E2_1928 and Pf6N2E2_1929 are separated by 112 nucleotides
Pf6N2E2_1927 - Capsule biosynthesis protein capA, at 2,281,438 to 2,282,553
_1927
Pf6N2E2_1928 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 2,282,557 to 2,283,333
_1928
Pf6N2E2_1929 - 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), at 2,283,446 to 2,284,780
_1929
Position (kb)
2282
2283
2284 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2281.585 kb on + strand, within Pf6N2E2_1927 at 2281.585 kb on + strand, within Pf6N2E2_1927 at 2281.702 kb on + strand, within Pf6N2E2_1927 at 2281.703 kb on - strand, within Pf6N2E2_1927 at 2281.703 kb on - strand, within Pf6N2E2_1927 at 2281.703 kb on - strand, within Pf6N2E2_1927 at 2281.840 kb on + strand, within Pf6N2E2_1927 at 2281.840 kb on + strand, within Pf6N2E2_1927 at 2281.841 kb on - strand, within Pf6N2E2_1927 at 2281.841 kb on - strand, within Pf6N2E2_1927 at 2281.843 kb on - strand, within Pf6N2E2_1927 at 2281.843 kb on - strand, within Pf6N2E2_1927 at 2281.851 kb on + strand, within Pf6N2E2_1927 at 2281.927 kb on + strand, within Pf6N2E2_1927 at 2281.927 kb on + strand, within Pf6N2E2_1927 at 2281.928 kb on - strand, within Pf6N2E2_1927 at 2282.030 kb on + strand, within Pf6N2E2_1927 at 2282.031 kb on - strand, within Pf6N2E2_1927 at 2282.136 kb on + strand, within Pf6N2E2_1927 at 2282.137 kb on - strand, within Pf6N2E2_1927 at 2282.183 kb on - strand, within Pf6N2E2_1927 at 2282.183 kb on - strand, within Pf6N2E2_1927 at 2282.183 kb on - strand, within Pf6N2E2_1927 at 2282.183 kb on - strand, within Pf6N2E2_1927 at 2282.184 kb on + strand, within Pf6N2E2_1927 at 2282.203 kb on + strand, within Pf6N2E2_1927 at 2282.204 kb on - strand, within Pf6N2E2_1927 at 2282.340 kb on + strand, within Pf6N2E2_1927 at 2282.340 kb on + strand, within Pf6N2E2_1927 at 2282.341 kb on - strand, within Pf6N2E2_1927 at 2282.341 kb on - strand, within Pf6N2E2_1927 at 2282.613 kb on - strand at 2282.771 kb on + strand, within Pf6N2E2_1928 at 2282.772 kb on - strand, within Pf6N2E2_1928 at 2282.772 kb on - strand, within Pf6N2E2_1928 at 2282.772 kb on - strand, within Pf6N2E2_1928 at 2282.799 kb on + strand, within Pf6N2E2_1928 at 2282.800 kb on - strand, within Pf6N2E2_1928 at 2283.028 kb on - strand, within Pf6N2E2_1928 at 2283.028 kb on - strand, within Pf6N2E2_1928 at 2283.028 kb on - strand, within Pf6N2E2_1928 at 2283.065 kb on - strand, within Pf6N2E2_1928 at 2283.065 kb on - strand, within Pf6N2E2_1928 at 2283.065 kb on - strand, within Pf6N2E2_1928 at 2283.167 kb on - strand, within Pf6N2E2_1928 at 2283.202 kb on - strand, within Pf6N2E2_1928 at 2283.202 kb on - strand, within Pf6N2E2_1928 at 2283.202 kb on - strand, within Pf6N2E2_1928 at 2283.331 kb on + strand at 2283.345 kb on + strand at 2283.346 kb on - strand at 2283.373 kb on + strand at 2283.380 kb on - strand at 2283.398 kb on + strand at 2283.400 kb on + strand at 2283.400 kb on + strand at 2283.400 kb on + strand at 2283.400 kb on + strand at 2283.400 kb on + strand at 2283.400 kb on + strand at 2283.401 kb on - strand at 2283.401 kb on - strand at 2283.401 kb on - strand at 2283.401 kb on - strand at 2283.727 kb on + strand, within Pf6N2E2_1929 at 2283.749 kb on - strand, within Pf6N2E2_1929 at 2283.749 kb on - strand, within Pf6N2E2_1929 at 2283.867 kb on - strand, within Pf6N2E2_1929 at 2283.895 kb on + strand, within Pf6N2E2_1929 at 2283.895 kb on + strand, within Pf6N2E2_1929 at 2283.911 kb on + strand, within Pf6N2E2_1929 at 2283.911 kb on + strand, within Pf6N2E2_1929 at 2283.911 kb on + strand at 2283.911 kb on + strand, within Pf6N2E2_1929 at 2283.912 kb on - strand, within Pf6N2E2_1929 at 2284.091 kb on - strand, within Pf6N2E2_1929
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM remove 2,281,585 + Pf6N2E2_1927 0.13 -0.0 2,281,585 + Pf6N2E2_1927 0.13 -0.4 2,281,702 + Pf6N2E2_1927 0.24 +1.8 2,281,703 - Pf6N2E2_1927 0.24 -0.4 2,281,703 - Pf6N2E2_1927 0.24 -0.7 2,281,703 - Pf6N2E2_1927 0.24 -0.7 2,281,840 + Pf6N2E2_1927 0.36 +1.6 2,281,840 + Pf6N2E2_1927 0.36 -1.2 2,281,841 - Pf6N2E2_1927 0.36 -2.1 2,281,841 - Pf6N2E2_1927 0.36 -1.7 2,281,843 - Pf6N2E2_1927 0.36 +0.3 2,281,843 - Pf6N2E2_1927 0.36 -0.7 2,281,851 + Pf6N2E2_1927 0.37 +0.7 2,281,927 + Pf6N2E2_1927 0.44 -0.2 2,281,927 + Pf6N2E2_1927 0.44 +0.9 2,281,928 - Pf6N2E2_1927 0.44 +0.9 2,282,030 + Pf6N2E2_1927 0.53 -0.5 2,282,031 - Pf6N2E2_1927 0.53 -0.7 2,282,136 + Pf6N2E2_1927 0.63 -0.4 2,282,137 - Pf6N2E2_1927 0.63 -0.4 2,282,183 - Pf6N2E2_1927 0.67 -0.2 2,282,183 - Pf6N2E2_1927 0.67 -1.6 2,282,183 - Pf6N2E2_1927 0.67 -0.4 2,282,183 - Pf6N2E2_1927 0.67 +0.6 2,282,184 + Pf6N2E2_1927 0.67 -1.0 2,282,203 + Pf6N2E2_1927 0.69 -0.0 2,282,204 - Pf6N2E2_1927 0.69 +0.2 2,282,340 + Pf6N2E2_1927 0.81 -0.3 2,282,340 + Pf6N2E2_1927 0.81 +0.1 2,282,341 - Pf6N2E2_1927 0.81 +1.6 2,282,341 - Pf6N2E2_1927 0.81 +2.3 2,282,613 - +2.6 2,282,771 + Pf6N2E2_1928 0.28 +0.2 2,282,772 - Pf6N2E2_1928 0.28 +0.3 2,282,772 - Pf6N2E2_1928 0.28 +0.6 2,282,772 - Pf6N2E2_1928 0.28 +0.6 2,282,799 + Pf6N2E2_1928 0.31 -0.1 2,282,800 - Pf6N2E2_1928 0.31 +0.7 2,283,028 - Pf6N2E2_1928 0.61 +0.5 2,283,028 - Pf6N2E2_1928 0.61 +0.6 2,283,028 - Pf6N2E2_1928 0.61 -1.4 2,283,065 - Pf6N2E2_1928 0.65 -0.8 2,283,065 - Pf6N2E2_1928 0.65 +1.6 2,283,065 - Pf6N2E2_1928 0.65 +0.7 2,283,167 - Pf6N2E2_1928 0.79 -0.0 2,283,202 - Pf6N2E2_1928 0.83 +0.3 2,283,202 - Pf6N2E2_1928 0.83 +0.4 2,283,202 - Pf6N2E2_1928 0.83 +0.2 2,283,331 + -0.6 2,283,345 + +1.1 2,283,346 - +0.0 2,283,373 + +0.8 2,283,380 - -0.6 2,283,398 + +0.1 2,283,400 + +0.6 2,283,400 + +0.6 2,283,400 + -0.0 2,283,400 + +0.6 2,283,400 + -1.7 2,283,400 + -0.0 2,283,401 - +0.2 2,283,401 - +0.5 2,283,401 - -0.4 2,283,401 - +0.9 2,283,727 + Pf6N2E2_1929 0.21 +1.4 2,283,749 - Pf6N2E2_1929 0.23 -1.2 2,283,749 - Pf6N2E2_1929 0.23 +1.1 2,283,867 - Pf6N2E2_1929 0.32 -0.4 2,283,895 + Pf6N2E2_1929 0.34 +0.1 2,283,895 + Pf6N2E2_1929 0.34 +0.4 2,283,911 + Pf6N2E2_1929 0.35 -0.1 2,283,911 + Pf6N2E2_1929 0.35 -0.1 2,283,911 + +0.9 2,283,911 + Pf6N2E2_1929 0.35 +0.9 2,283,912 - Pf6N2E2_1929 0.35 -0.4 2,284,091 - Pf6N2E2_1929 0.48 +0.6
Or see this region's nucleotide sequence