Experiment: Cobalt chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1243 and Pf6N2E2_1244 are separated by 152 nucleotides Pf6N2E2_1244 and Pf6N2E2_1245 are separated by 121 nucleotides Pf6N2E2_1245 and Pf6N2E2_1246 are separated by 25 nucleotides Pf6N2E2_1246 and Pf6N2E2_1247 are separated by 88 nucleotides Pf6N2E2_1247 and Pf6N2E2_1248 are separated by 285 nucleotides
Pf6N2E2_1243 - FIG00953437: hypothetical protein, at 1,457,737 to 1,457,991
_1243
Pf6N2E2_1244 - hypothetical protein, at 1,458,144 to 1,458,374
_1244
Pf6N2E2_1245 - hypothetical protein, at 1,458,496 to 1,458,921
_1245
Pf6N2E2_1246 - FIG00961372: hypothetical protein, at 1,458,947 to 1,459,174
_1246
Pf6N2E2_1247 - hypothetical protein, at 1,459,263 to 1,459,448
_1247
Pf6N2E2_1248 - MutT/nudix family protein, at 1,459,734 to 1,460,096
_1248
Position (kb)
1458
1459
1460 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1458.069 kb on + strand at 1458.329 kb on - strand, within Pf6N2E2_1244 at 1458.409 kb on - strand at 1458.460 kb on + strand at 1458.515 kb on + strand at 1458.620 kb on - strand, within Pf6N2E2_1245 at 1458.625 kb on + strand, within Pf6N2E2_1245 at 1458.625 kb on + strand, within Pf6N2E2_1245 at 1458.625 kb on + strand, within Pf6N2E2_1245 at 1458.625 kb on + strand, within Pf6N2E2_1245 at 1458.625 kb on + strand, within Pf6N2E2_1245 at 1458.626 kb on - strand, within Pf6N2E2_1245 at 1458.626 kb on - strand, within Pf6N2E2_1245 at 1458.627 kb on + strand, within Pf6N2E2_1245 at 1458.627 kb on + strand, within Pf6N2E2_1245 at 1458.627 kb on + strand, within Pf6N2E2_1245 at 1458.627 kb on + strand, within Pf6N2E2_1245 at 1458.627 kb on + strand, within Pf6N2E2_1245 at 1458.628 kb on - strand, within Pf6N2E2_1245 at 1458.628 kb on - strand, within Pf6N2E2_1245 at 1458.628 kb on - strand, within Pf6N2E2_1245 at 1458.727 kb on + strand, within Pf6N2E2_1245 at 1458.728 kb on - strand, within Pf6N2E2_1245 at 1458.844 kb on + strand, within Pf6N2E2_1245 at 1458.845 kb on - strand, within Pf6N2E2_1245 at 1458.845 kb on - strand, within Pf6N2E2_1245 at 1458.847 kb on + strand, within Pf6N2E2_1245 at 1458.848 kb on - strand, within Pf6N2E2_1245 at 1458.848 kb on - strand, within Pf6N2E2_1245 at 1458.848 kb on - strand, within Pf6N2E2_1245 at 1458.850 kb on + strand, within Pf6N2E2_1245 at 1459.025 kb on + strand, within Pf6N2E2_1246 at 1459.026 kb on - strand, within Pf6N2E2_1246 at 1459.026 kb on - strand, within Pf6N2E2_1246 at 1459.155 kb on + strand at 1459.155 kb on + strand at 1459.204 kb on - strand at 1459.282 kb on + strand, within Pf6N2E2_1247 at 1459.282 kb on + strand, within Pf6N2E2_1247 at 1459.301 kb on - strand, within Pf6N2E2_1247 at 1459.301 kb on - strand, within Pf6N2E2_1247 at 1459.362 kb on + strand, within Pf6N2E2_1247 at 1459.362 kb on + strand, within Pf6N2E2_1247 at 1459.362 kb on + strand, within Pf6N2E2_1247 at 1459.362 kb on + strand, within Pf6N2E2_1247 at 1459.362 kb on + strand, within Pf6N2E2_1247 at 1459.363 kb on - strand, within Pf6N2E2_1247 at 1459.547 kb on - strand at 1459.547 kb on - strand at 1459.553 kb on - strand at 1459.593 kb on + strand at 1459.594 kb on - strand at 1459.594 kb on - strand at 1459.632 kb on + strand at 1459.652 kb on + strand at 1459.694 kb on + strand at 1459.694 kb on + strand at 1459.695 kb on - strand at 1459.695 kb on - strand at 1459.696 kb on + strand at 1459.696 kb on + strand at 1459.696 kb on + strand at 1459.697 kb on - strand at 1459.706 kb on + strand at 1459.706 kb on + strand at 1459.859 kb on + strand, within Pf6N2E2_1248 at 1459.860 kb on - strand, within Pf6N2E2_1248 at 1459.919 kb on + strand, within Pf6N2E2_1248 at 1459.919 kb on + strand, within Pf6N2E2_1248 at 1459.919 kb on + strand at 1460.094 kb on + strand at 1460.094 kb on + strand at 1460.094 kb on + strand at 1460.094 kb on + strand at 1460.094 kb on + strand at 1460.094 kb on + strand at 1460.124 kb on - strand at 1460.166 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM remove 1,458,069 + -1.0 1,458,329 - Pf6N2E2_1244 0.80 +2.2 1,458,409 - +0.6 1,458,460 + -1.1 1,458,515 + +1.9 1,458,620 - Pf6N2E2_1245 0.29 +0.6 1,458,625 + Pf6N2E2_1245 0.30 +0.2 1,458,625 + Pf6N2E2_1245 0.30 -0.7 1,458,625 + Pf6N2E2_1245 0.30 +0.6 1,458,625 + Pf6N2E2_1245 0.30 -0.3 1,458,625 + Pf6N2E2_1245 0.30 -0.7 1,458,626 - Pf6N2E2_1245 0.31 -0.2 1,458,626 - Pf6N2E2_1245 0.31 +0.3 1,458,627 + Pf6N2E2_1245 0.31 +0.9 1,458,627 + Pf6N2E2_1245 0.31 +0.6 1,458,627 + Pf6N2E2_1245 0.31 +0.9 1,458,627 + Pf6N2E2_1245 0.31 -0.2 1,458,627 + Pf6N2E2_1245 0.31 -1.3 1,458,628 - Pf6N2E2_1245 0.31 -1.7 1,458,628 - Pf6N2E2_1245 0.31 +1.3 1,458,628 - Pf6N2E2_1245 0.31 -2.3 1,458,727 + Pf6N2E2_1245 0.54 -0.1 1,458,728 - Pf6N2E2_1245 0.54 -1.5 1,458,844 + Pf6N2E2_1245 0.82 +0.3 1,458,845 - Pf6N2E2_1245 0.82 +1.5 1,458,845 - Pf6N2E2_1245 0.82 +1.3 1,458,847 + Pf6N2E2_1245 0.82 -0.2 1,458,848 - Pf6N2E2_1245 0.83 +1.2 1,458,848 - Pf6N2E2_1245 0.83 -0.4 1,458,848 - Pf6N2E2_1245 0.83 +0.3 1,458,850 + Pf6N2E2_1245 0.83 +0.8 1,459,025 + Pf6N2E2_1246 0.34 -0.7 1,459,026 - Pf6N2E2_1246 0.35 -0.7 1,459,026 - Pf6N2E2_1246 0.35 -0.7 1,459,155 + +0.3 1,459,155 + -0.7 1,459,204 - -0.7 1,459,282 + Pf6N2E2_1247 0.10 +0.9 1,459,282 + Pf6N2E2_1247 0.10 -0.3 1,459,301 - Pf6N2E2_1247 0.20 -1.7 1,459,301 - Pf6N2E2_1247 0.20 -1.3 1,459,362 + Pf6N2E2_1247 0.53 +0.3 1,459,362 + Pf6N2E2_1247 0.53 -0.7 1,459,362 + Pf6N2E2_1247 0.53 +0.5 1,459,362 + Pf6N2E2_1247 0.53 +0.3 1,459,362 + Pf6N2E2_1247 0.53 -0.3 1,459,363 - Pf6N2E2_1247 0.54 +0.3 1,459,547 - +0.9 1,459,547 - +1.6 1,459,553 - -2.3 1,459,593 + +0.5 1,459,594 - -2.3 1,459,594 - -2.0 1,459,632 + +0.6 1,459,652 + +0.8 1,459,694 + +0.2 1,459,694 + -0.7 1,459,695 - +1.3 1,459,695 - -0.3 1,459,696 + +2.3 1,459,696 + -0.7 1,459,696 + -0.7 1,459,697 - +0.3 1,459,706 + +1.9 1,459,706 + +0.7 1,459,859 + Pf6N2E2_1248 0.34 +0.6 1,459,860 - Pf6N2E2_1248 0.35 +0.3 1,459,919 + Pf6N2E2_1248 0.51 +0.5 1,459,919 + Pf6N2E2_1248 0.51 +1.1 1,459,919 + +0.3 1,460,094 + +0.5 1,460,094 + -0.1 1,460,094 + +0.5 1,460,094 + +0.6 1,460,094 + -0.9 1,460,094 + -1.7 1,460,124 - -0.5 1,460,166 - -0.3
Or see this region's nucleotide sequence