Experiment: Cobalt chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1003 and Pf6N2E2_1004 are separated by 88 nucleotides Pf6N2E2_1004 and Pf6N2E2_1005 are separated by 85 nucleotides
Pf6N2E2_1003 - Fucose permease, at 1,172,313 to 1,173,695
_1003
Pf6N2E2_1004 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 1,173,784 to 1,174,542
_1004
Pf6N2E2_1005 - Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1), at 1,174,628 to 1,175,581
_1005
Position (kb)
1173
1174
1175 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1172.927 kb on - strand, within Pf6N2E2_1003 at 1173.009 kb on + strand, within Pf6N2E2_1003 at 1173.009 kb on + strand, within Pf6N2E2_1003 at 1173.010 kb on - strand, within Pf6N2E2_1003 at 1173.010 kb on - strand, within Pf6N2E2_1003 at 1173.010 kb on - strand, within Pf6N2E2_1003 at 1173.125 kb on - strand, within Pf6N2E2_1003 at 1173.125 kb on - strand, within Pf6N2E2_1003 at 1173.125 kb on - strand, within Pf6N2E2_1003 at 1173.189 kb on + strand, within Pf6N2E2_1003 at 1173.189 kb on + strand, within Pf6N2E2_1003 at 1173.190 kb on - strand, within Pf6N2E2_1003 at 1173.219 kb on + strand, within Pf6N2E2_1003 at 1173.264 kb on + strand, within Pf6N2E2_1003 at 1173.264 kb on + strand, within Pf6N2E2_1003 at 1173.264 kb on + strand, within Pf6N2E2_1003 at 1173.291 kb on + strand, within Pf6N2E2_1003 at 1173.291 kb on + strand, within Pf6N2E2_1003 at 1173.291 kb on + strand, within Pf6N2E2_1003 at 1173.292 kb on - strand, within Pf6N2E2_1003 at 1173.292 kb on - strand, within Pf6N2E2_1003 at 1173.292 kb on - strand, within Pf6N2E2_1003 at 1173.314 kb on + strand, within Pf6N2E2_1003 at 1173.314 kb on + strand, within Pf6N2E2_1003 at 1173.441 kb on + strand, within Pf6N2E2_1003 at 1173.441 kb on + strand, within Pf6N2E2_1003 at 1173.442 kb on - strand, within Pf6N2E2_1003 at 1173.462 kb on + strand, within Pf6N2E2_1003 at 1173.462 kb on + strand, within Pf6N2E2_1003 at 1173.612 kb on + strand at 1173.612 kb on + strand at 1173.613 kb on - strand at 1173.613 kb on - strand at 1173.616 kb on + strand at 1173.684 kb on - strand at 1173.722 kb on + strand at 1173.722 kb on + strand at 1173.778 kb on + strand at 1173.779 kb on - strand at 1173.816 kb on + strand at 1173.827 kb on + strand at 1173.827 kb on + strand at 1173.827 kb on + strand at 1173.828 kb on - strand at 1173.831 kb on + strand at 1173.831 kb on + strand at 1173.832 kb on - strand at 1173.832 kb on - strand at 1173.832 kb on - strand at 1173.832 kb on - strand at 1173.832 kb on - strand at 1173.946 kb on + strand, within Pf6N2E2_1004 at 1173.947 kb on - strand, within Pf6N2E2_1004 at 1173.947 kb on - strand, within Pf6N2E2_1004 at 1173.947 kb on - strand, within Pf6N2E2_1004 at 1173.958 kb on - strand, within Pf6N2E2_1004 at 1174.023 kb on - strand, within Pf6N2E2_1004 at 1174.049 kb on + strand, within Pf6N2E2_1004 at 1174.049 kb on + strand, within Pf6N2E2_1004 at 1174.074 kb on - strand, within Pf6N2E2_1004 at 1174.081 kb on + strand, within Pf6N2E2_1004 at 1174.132 kb on - strand, within Pf6N2E2_1004 at 1174.153 kb on + strand, within Pf6N2E2_1004 at 1174.313 kb on - strand, within Pf6N2E2_1004 at 1174.422 kb on + strand, within Pf6N2E2_1004 at 1174.423 kb on - strand, within Pf6N2E2_1004 at 1174.423 kb on - strand, within Pf6N2E2_1004 at 1174.423 kb on - strand, within Pf6N2E2_1004 at 1174.466 kb on + strand, within Pf6N2E2_1004 at 1174.466 kb on + strand, within Pf6N2E2_1004 at 1174.693 kb on - strand at 1174.759 kb on + strand, within Pf6N2E2_1005 at 1174.759 kb on + strand, within Pf6N2E2_1005 at 1174.763 kb on + strand, within Pf6N2E2_1005 at 1174.763 kb on + strand, within Pf6N2E2_1005 at 1174.763 kb on + strand, within Pf6N2E2_1005 at 1174.763 kb on + strand, within Pf6N2E2_1005 at 1174.764 kb on - strand, within Pf6N2E2_1005 at 1174.764 kb on - strand, within Pf6N2E2_1005 at 1174.764 kb on - strand, within Pf6N2E2_1005 at 1174.806 kb on + strand, within Pf6N2E2_1005 at 1174.806 kb on + strand, within Pf6N2E2_1005 at 1174.806 kb on + strand, within Pf6N2E2_1005 at 1174.807 kb on - strand, within Pf6N2E2_1005 at 1174.947 kb on + strand, within Pf6N2E2_1005 at 1174.947 kb on + strand, within Pf6N2E2_1005 at 1174.947 kb on + strand, within Pf6N2E2_1005 at 1174.948 kb on - strand, within Pf6N2E2_1005 at 1175.013 kb on - strand, within Pf6N2E2_1005 at 1175.048 kb on - strand, within Pf6N2E2_1005 at 1175.048 kb on - strand, within Pf6N2E2_1005 at 1175.285 kb on - strand, within Pf6N2E2_1005
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM remove 1,172,927 - Pf6N2E2_1003 0.44 +0.4 1,173,009 + Pf6N2E2_1003 0.50 -1.2 1,173,009 + Pf6N2E2_1003 0.50 -0.0 1,173,010 - Pf6N2E2_1003 0.50 -0.9 1,173,010 - Pf6N2E2_1003 0.50 -0.8 1,173,010 - Pf6N2E2_1003 0.50 +1.4 1,173,125 - Pf6N2E2_1003 0.59 -0.2 1,173,125 - Pf6N2E2_1003 0.59 +0.4 1,173,125 - Pf6N2E2_1003 0.59 -0.2 1,173,189 + Pf6N2E2_1003 0.63 -1.6 1,173,189 + Pf6N2E2_1003 0.63 +0.4 1,173,190 - Pf6N2E2_1003 0.63 +0.4 1,173,219 + Pf6N2E2_1003 0.66 -1.4 1,173,264 + Pf6N2E2_1003 0.69 +0.8 1,173,264 + Pf6N2E2_1003 0.69 -0.8 1,173,264 + Pf6N2E2_1003 0.69 +0.4 1,173,291 + Pf6N2E2_1003 0.71 +0.2 1,173,291 + Pf6N2E2_1003 0.71 -0.8 1,173,291 + Pf6N2E2_1003 0.71 -0.0 1,173,292 - Pf6N2E2_1003 0.71 +0.8 1,173,292 - Pf6N2E2_1003 0.71 -0.6 1,173,292 - Pf6N2E2_1003 0.71 +0.9 1,173,314 + Pf6N2E2_1003 0.72 +0.7 1,173,314 + Pf6N2E2_1003 0.72 -1.2 1,173,441 + Pf6N2E2_1003 0.82 -0.2 1,173,441 + Pf6N2E2_1003 0.82 +0.5 1,173,442 - Pf6N2E2_1003 0.82 -1.8 1,173,462 + Pf6N2E2_1003 0.83 +0.4 1,173,462 + Pf6N2E2_1003 0.83 -1.8 1,173,612 + -1.1 1,173,612 + -1.4 1,173,613 - -1.3 1,173,613 - -0.4 1,173,616 + +0.4 1,173,684 - +0.4 1,173,722 + -1.6 1,173,722 + -0.1 1,173,778 + +0.4 1,173,779 - +0.8 1,173,816 + -0.2 1,173,827 + -1.2 1,173,827 + -0.1 1,173,827 + +0.6 1,173,828 - -0.4 1,173,831 + +0.4 1,173,831 + +0.1 1,173,832 - -1.2 1,173,832 - +0.1 1,173,832 - +0.7 1,173,832 - +3.2 1,173,832 - +1.1 1,173,946 + Pf6N2E2_1004 0.21 -1.6 1,173,947 - Pf6N2E2_1004 0.21 -0.0 1,173,947 - Pf6N2E2_1004 0.21 -0.6 1,173,947 - Pf6N2E2_1004 0.21 -1.6 1,173,958 - Pf6N2E2_1004 0.23 +0.4 1,174,023 - Pf6N2E2_1004 0.31 +0.3 1,174,049 + Pf6N2E2_1004 0.35 -0.3 1,174,049 + Pf6N2E2_1004 0.35 +0.9 1,174,074 - Pf6N2E2_1004 0.38 -0.2 1,174,081 + Pf6N2E2_1004 0.39 -0.8 1,174,132 - Pf6N2E2_1004 0.46 -0.6 1,174,153 + Pf6N2E2_1004 0.49 +1.4 1,174,313 - Pf6N2E2_1004 0.70 +0.4 1,174,422 + Pf6N2E2_1004 0.84 -0.3 1,174,423 - Pf6N2E2_1004 0.84 +0.1 1,174,423 - Pf6N2E2_1004 0.84 +0.1 1,174,423 - Pf6N2E2_1004 0.84 -1.0 1,174,466 + Pf6N2E2_1004 0.90 -0.9 1,174,466 + Pf6N2E2_1004 0.90 +1.8 1,174,693 - +1.0 1,174,759 + Pf6N2E2_1005 0.14 -0.2 1,174,759 + Pf6N2E2_1005 0.14 +0.2 1,174,763 + Pf6N2E2_1005 0.14 +0.4 1,174,763 + Pf6N2E2_1005 0.14 -0.1 1,174,763 + Pf6N2E2_1005 0.14 -1.8 1,174,763 + Pf6N2E2_1005 0.14 -2.8 1,174,764 - Pf6N2E2_1005 0.14 -2.4 1,174,764 - Pf6N2E2_1005 0.14 -0.2 1,174,764 - Pf6N2E2_1005 0.14 +1.7 1,174,806 + Pf6N2E2_1005 0.19 -1.2 1,174,806 + Pf6N2E2_1005 0.19 +0.4 1,174,806 + Pf6N2E2_1005 0.19 -0.0 1,174,807 - Pf6N2E2_1005 0.19 -1.9 1,174,947 + Pf6N2E2_1005 0.33 -0.2 1,174,947 + Pf6N2E2_1005 0.33 -0.3 1,174,947 + Pf6N2E2_1005 0.33 -0.6 1,174,948 - Pf6N2E2_1005 0.34 +0.4 1,175,013 - Pf6N2E2_1005 0.40 +0.1 1,175,048 - Pf6N2E2_1005 0.44 -1.6 1,175,048 - Pf6N2E2_1005 0.44 -1.2 1,175,285 - Pf6N2E2_1005 0.69 -1.2
Or see this region's nucleotide sequence