Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_894

Experiment: Cobalt chloride 0.4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_894 and Pf6N2E2_895 are separated by 367 nucleotidesPf6N2E2_895 and Pf6N2E2_896 are separated by 141 nucleotides Pf6N2E2_894 - Beta-lactamase-like, at 1,047,281 to 1,048,165 _894 Pf6N2E2_895 - Transcriptional regulator, HxlR family, at 1,048,533 to 1,049,018 _895 Pf6N2E2_896 - Regulatory protein, LysR:LysR, substrate-binding, at 1,049,160 to 1,050,077 _896 Position (kb) 1047 1048 1049Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 1046.321 kb on + strandat 1046.339 kb on - strandat 1046.339 kb on - strandat 1046.339 kb on - strandat 1046.382 kb on - strandat 1046.557 kb on + strandat 1046.557 kb on + strandat 1046.558 kb on - strandat 1046.578 kb on + strandat 1046.578 kb on + strandat 1046.578 kb on + strandat 1046.578 kb on + strandat 1046.578 kb on + strandat 1046.578 kb on + strandat 1046.578 kb on + strandat 1046.578 kb on + strandat 1046.578 kb on + strandat 1046.578 kb on + strandat 1046.578 kb on + strandat 1046.578 kb on + strandat 1046.579 kb on - strandat 1046.579 kb on - strandat 1046.579 kb on - strandat 1046.579 kb on - strandat 1046.579 kb on - strandat 1046.658 kb on - strandat 1046.761 kb on - strandat 1046.768 kb on - strandat 1046.807 kb on + strandat 1046.808 kb on - strandat 1046.808 kb on - strandat 1046.912 kb on + strandat 1046.912 kb on + strandat 1046.912 kb on + strandat 1047.004 kb on + strandat 1047.004 kb on + strandat 1047.005 kb on - strandat 1047.005 kb on - strandat 1047.053 kb on + strandat 1047.053 kb on + strandat 1047.054 kb on - strandat 1047.103 kb on + strandat 1047.103 kb on + strandat 1047.266 kb on + strandat 1047.266 kb on + strandat 1047.267 kb on - strandat 1047.267 kb on - strandat 1047.267 kb on - strandat 1047.318 kb on + strandat 1047.319 kb on - strandat 1047.319 kb on - strandat 1047.509 kb on + strand, within Pf6N2E2_894at 1047.509 kb on + strand, within Pf6N2E2_894at 1047.509 kb on + strand, within Pf6N2E2_894at 1047.510 kb on - strand, within Pf6N2E2_894at 1047.510 kb on - strand, within Pf6N2E2_894at 1047.555 kb on + strand, within Pf6N2E2_894at 1047.556 kb on - strand, within Pf6N2E2_894at 1047.556 kb on - strand, within Pf6N2E2_894at 1047.591 kb on + strand, within Pf6N2E2_894at 1047.592 kb on - strand, within Pf6N2E2_894at 1047.592 kb on - strand, within Pf6N2E2_894at 1047.630 kb on + strand, within Pf6N2E2_894at 1047.631 kb on - strand, within Pf6N2E2_894at 1047.657 kb on + strand, within Pf6N2E2_894at 1047.657 kb on + strand, within Pf6N2E2_894at 1047.657 kb on + strand, within Pf6N2E2_894at 1047.657 kb on + strand, within Pf6N2E2_894at 1047.658 kb on - strand, within Pf6N2E2_894at 1047.804 kb on + strand, within Pf6N2E2_894at 1047.805 kb on - strand, within Pf6N2E2_894at 1047.871 kb on - strand, within Pf6N2E2_894at 1047.910 kb on + strand, within Pf6N2E2_894at 1048.098 kb on + strandat 1048.098 kb on + strandat 1048.098 kb on + strandat 1048.099 kb on - strandat 1048.116 kb on + strandat 1048.116 kb on + strandat 1048.137 kb on + strandat 1048.190 kb on + strandat 1048.191 kb on - strandat 1048.191 kb on - strandat 1048.191 kb on - strandat 1048.293 kb on + strandat 1048.293 kb on + strandat 1048.293 kb on + strandat 1048.293 kb on + strandat 1048.293 kb on + strandat 1048.293 kb on + strandat 1048.293 kb on + strandat 1048.294 kb on - strandat 1048.294 kb on - strandat 1048.294 kb on - strandat 1048.295 kb on + strandat 1048.295 kb on + strandat 1048.295 kb on + strandat 1048.295 kb on + strandat 1048.295 kb on + strandat 1048.295 kb on + strandat 1048.295 kb on + strandat 1048.295 kb on + strandat 1048.295 kb on + strandat 1048.296 kb on - strandat 1048.296 kb on - strandat 1048.296 kb on - strandat 1048.296 kb on - strandat 1048.296 kb on - strandat 1048.296 kb on - strandat 1048.297 kb on + strandat 1048.297 kb on + strandat 1048.297 kb on + strandat 1048.297 kb on + strandat 1048.297 kb on + strandat 1048.297 kb on + strandat 1048.297 kb on + strandat 1048.297 kb on + strandat 1048.297 kb on + strandat 1048.297 kb on + strandat 1048.297 kb on + strandat 1048.297 kb on + strandat 1048.297 kb on + strandat 1048.297 kb on + strandat 1048.297 kb on + strandat 1048.297 kb on + strandat 1048.297 kb on + strandat 1048.297 kb on + strandat 1048.297 kb on + strandat 1048.297 kb on + strandat 1048.297 kb on + strandat 1048.297 kb on + strandat 1048.297 kb on + strandat 1048.298 kb on - strandat 1048.298 kb on - strandat 1048.298 kb on - strandat 1048.298 kb on - strandat 1048.298 kb on - strandat 1048.298 kb on - strandat 1048.298 kb on - strandat 1048.298 kb on - strandat 1048.298 kb on - strandat 1048.298 kb on - strandat 1048.298 kb on - strandat 1048.301 kb on + strandat 1048.301 kb on + strandat 1048.301 kb on + strandat 1048.301 kb on + strandat 1048.301 kb on + strandat 1048.301 kb on + strandat 1048.302 kb on - strandat 1048.302 kb on - strandat 1048.302 kb on - strandat 1048.302 kb on - strandat 1048.302 kb on - strandat 1048.302 kb on - strandat 1048.305 kb on + strandat 1048.305 kb on + strandat 1048.305 kb on + strandat 1048.306 kb on - strandat 1048.306 kb on - strandat 1048.306 kb on - strandat 1048.306 kb on - strandat 1048.306 kb on - strandat 1048.313 kb on + strandat 1048.313 kb on + strandat 1048.314 kb on - strandat 1048.375 kb on + strandat 1048.376 kb on - strandat 1048.482 kb on + strandat 1048.482 kb on + strandat 1048.482 kb on + strandat 1048.485 kb on + strandat 1048.528 kb on + strandat 1048.529 kb on - strandat 1048.529 kb on - strandat 1048.529 kb on - strandat 1048.529 kb on - strandat 1048.645 kb on - strand, within Pf6N2E2_895at 1048.768 kb on + strand, within Pf6N2E2_895at 1048.768 kb on + strand, within Pf6N2E2_895at 1048.795 kb on + strand, within Pf6N2E2_895at 1048.795 kb on + strand, within Pf6N2E2_895at 1048.795 kb on + strand, within Pf6N2E2_895at 1048.818 kb on + strand, within Pf6N2E2_895at 1048.818 kb on + strand, within Pf6N2E2_895at 1048.819 kb on - strand, within Pf6N2E2_895at 1048.930 kb on + strand, within Pf6N2E2_895at 1048.930 kb on + strand, within Pf6N2E2_895at 1048.930 kb on + strand, within Pf6N2E2_895at 1048.930 kb on + strand, within Pf6N2E2_895at 1048.935 kb on + strand, within Pf6N2E2_895at 1049.013 kb on - strandat 1049.016 kb on + strandat 1049.016 kb on + strandat 1049.016 kb on + strandat 1049.016 kb on + strandat 1049.016 kb on + strandat 1049.016 kb on + strandat 1049.016 kb on + strandat 1049.017 kb on - strandat 1049.017 kb on - strandat 1049.017 kb on - strandat 1049.017 kb on - strandat 1049.017 kb on - strandat 1049.017 kb on - strandat 1049.063 kb on - strandat 1049.076 kb on + strandat 1049.077 kb on - strandat 1049.161 kb on + strandat 1049.161 kb on + strandat 1049.162 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.4 mM
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1,046,321 + +1.2
1,046,339 - +0.0
1,046,339 - +0.5
1,046,339 - +0.8
1,046,382 - -0.5
1,046,557 + +1.2
1,046,557 + +0.8
1,046,558 - +0.2
1,046,578 + +1.8
1,046,578 + +0.8
1,046,578 + -0.8
1,046,578 + +0.1
1,046,578 + -0.2
1,046,578 + +1.8
1,046,578 + +0.3
1,046,578 + +0.6
1,046,578 + +0.3
1,046,578 + -1.1
1,046,578 + +0.1
1,046,578 + -0.2
1,046,579 - +0.4
1,046,579 - +0.3
1,046,579 - -0.2
1,046,579 - -0.8
1,046,579 - -1.3
1,046,658 - -0.2
1,046,761 - +1.2
1,046,768 - +0.5
1,046,807 + -0.2
1,046,808 - -1.1
1,046,808 - -1.0
1,046,912 + +0.8
1,046,912 + -0.2
1,046,912 + -0.3
1,047,004 + +0.4
1,047,004 + +0.8
1,047,005 - +0.2
1,047,005 - -0.4
1,047,053 + +0.6
1,047,053 + +0.1
1,047,054 - +0.8
1,047,103 + +1.2
1,047,103 + +0.2
1,047,266 + -0.4
1,047,266 + +1.8
1,047,267 - -1.4
1,047,267 - -0.6
1,047,267 - +0.8
1,047,318 + -1.5
1,047,319 - -0.8
1,047,319 - +1.4
1,047,509 + Pf6N2E2_894 0.26 -0.5
1,047,509 + Pf6N2E2_894 0.26 +0.4
1,047,509 + Pf6N2E2_894 0.26 -0.6
1,047,510 - Pf6N2E2_894 0.26 -0.2
1,047,510 - Pf6N2E2_894 0.26 +2.4
1,047,555 + Pf6N2E2_894 0.31 -1.2
1,047,556 - Pf6N2E2_894 0.31 -0.1
1,047,556 - Pf6N2E2_894 0.31 +0.8
1,047,591 + Pf6N2E2_894 0.35 -1.2
1,047,592 - Pf6N2E2_894 0.35 +0.3
1,047,592 - Pf6N2E2_894 0.35 +0.1
1,047,630 + Pf6N2E2_894 0.39 -0.2
1,047,631 - Pf6N2E2_894 0.40 +0.8
1,047,657 + Pf6N2E2_894 0.42 +0.0
1,047,657 + Pf6N2E2_894 0.42 +1.1
1,047,657 + Pf6N2E2_894 0.42 +1.6
1,047,657 + Pf6N2E2_894 0.42 +0.2
1,047,658 - Pf6N2E2_894 0.43 +0.8
1,047,804 + Pf6N2E2_894 0.59 -0.6
1,047,805 - Pf6N2E2_894 0.59 +1.8
1,047,871 - Pf6N2E2_894 0.67 +2.4
1,047,910 + Pf6N2E2_894 0.71 +0.5
1,048,098 + +0.7
1,048,098 + +0.1
1,048,098 + -0.1
1,048,099 - +0.8
1,048,116 + +0.1
1,048,116 + +0.3
1,048,137 + +0.6
1,048,190 + -0.6
1,048,191 - +0.1
1,048,191 - -1.5
1,048,191 - -0.2
1,048,293 + +1.2
1,048,293 + +0.2
1,048,293 + +0.5
1,048,293 + +0.3
1,048,293 + -0.5
1,048,293 + -0.2
1,048,293 + -0.5
1,048,294 - +0.5
1,048,294 - -0.8
1,048,294 - -0.5
1,048,295 + +1.5
1,048,295 + +0.2
1,048,295 + -0.3
1,048,295 + -0.5
1,048,295 + +0.7
1,048,295 + +1.8
1,048,295 + +0.5
1,048,295 + -0.3
1,048,295 + -0.4
1,048,296 - -0.8
1,048,296 - +0.1
1,048,296 - +0.2
1,048,296 - +0.8
1,048,296 - -1.2
1,048,296 - +0.0
1,048,297 + +6.4
1,048,297 + -2.5
1,048,297 + +3.6
1,048,297 + -2.0
1,048,297 + +0.4
1,048,297 + -0.2
1,048,297 + -1.3
1,048,297 + -0.6
1,048,297 + -0.9
1,048,297 + +0.1
1,048,297 + -0.7
1,048,297 + +0.1
1,048,297 + -1.0
1,048,297 + -0.4
1,048,297 + -1.0
1,048,297 + +2.4
1,048,297 + +0.3
1,048,297 + -0.2
1,048,297 + -0.8
1,048,297 + +1.2
1,048,297 + +0.5
1,048,297 + -0.5
1,048,297 + -0.5
1,048,298 - -1.0
1,048,298 - -0.6
1,048,298 - +0.8
1,048,298 - +0.4
1,048,298 - +0.8
1,048,298 - -0.2
1,048,298 - +0.1
1,048,298 - -0.0
1,048,298 - -0.4
1,048,298 - +1.1
1,048,298 - +0.0
1,048,301 + -1.6
1,048,301 + -0.2
1,048,301 + -1.2
1,048,301 + -1.5
1,048,301 + +0.8
1,048,301 + -0.2
1,048,302 - +1.2
1,048,302 - +1.3
1,048,302 - +1.0
1,048,302 - +0.1
1,048,302 - +2.4
1,048,302 - +0.1
1,048,305 + -1.5
1,048,305 + +0.8
1,048,305 + -0.4
1,048,306 - -1.6
1,048,306 - +1.1
1,048,306 - -0.2
1,048,306 - -0.2
1,048,306 - -2.2
1,048,313 + -0.2
1,048,313 + -1.6
1,048,314 - +0.3
1,048,375 + +0.2
1,048,376 - -0.8
1,048,482 + +0.1
1,048,482 + +0.2
1,048,482 + +0.0
1,048,485 + -1.1
1,048,528 + -1.5
1,048,529 - +0.2
1,048,529 - -0.2
1,048,529 - -0.2
1,048,529 - -0.2
1,048,645 - Pf6N2E2_895 0.23 +0.8
1,048,768 + Pf6N2E2_895 0.48 +0.8
1,048,768 + Pf6N2E2_895 0.48 +0.2
1,048,795 + Pf6N2E2_895 0.54 -1.2
1,048,795 + Pf6N2E2_895 0.54 +0.8
1,048,795 + Pf6N2E2_895 0.54 +0.8
1,048,818 + Pf6N2E2_895 0.59 +1.8
1,048,818 + Pf6N2E2_895 0.59 -0.0
1,048,819 - Pf6N2E2_895 0.59 +0.8
1,048,930 + Pf6N2E2_895 0.82 -0.2
1,048,930 + Pf6N2E2_895 0.82 +0.8
1,048,930 + Pf6N2E2_895 0.82 -0.2
1,048,930 + Pf6N2E2_895 0.82 -1.5
1,048,935 + Pf6N2E2_895 0.83 -1.8
1,049,013 - +0.8
1,049,016 + -0.2
1,049,016 + +0.2
1,049,016 + -0.2
1,049,016 + -0.2
1,049,016 + +1.4
1,049,016 + +2.8
1,049,016 + +0.5
1,049,017 - -0.2
1,049,017 - +0.1
1,049,017 - +1.8
1,049,017 - +1.1
1,049,017 - -1.2
1,049,017 - +0.8
1,049,063 - +0.3
1,049,076 + -0.8
1,049,077 - -0.2
1,049,161 + +0.8
1,049,161 + +1.8
1,049,162 - -0.6

Or see this region's nucleotide sequence