Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_6031

Experiment: Cobalt chloride 0.4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_6029 and Pf6N2E2_6030 overlap by 10 nucleotidesPf6N2E2_6030 and Pf6N2E2_6031 are separated by 185 nucleotidesPf6N2E2_6031 and Pf6N2E2_6032 are separated by 161 nucleotidesPf6N2E2_6032 and Pf6N2E2_6033 are separated by 88 nucleotides Pf6N2E2_6029 - hypothetical protein, at 6,846,836 to 6,847,201 _6029 Pf6N2E2_6030 - Diaminopimelate epimerase (EC 5.1.1.7), at 6,847,192 to 6,847,995 _6030 Pf6N2E2_6031 - hypothetical protein, at 6,848,181 to 6,848,705 _6031 Pf6N2E2_6032 - acetyltransferase, GNAT family, at 6,848,867 to 6,849,340 _6032 Pf6N2E2_6033 - Sterol desaturase, at 6,849,429 to 6,850,526 _6033 Position (kb) 6848 6849Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6847.510 kb on - strand, within Pf6N2E2_6030at 6847.654 kb on + strand, within Pf6N2E2_6030at 6847.654 kb on + strand, within Pf6N2E2_6030at 6847.654 kb on + strand, within Pf6N2E2_6030at 6847.655 kb on - strand, within Pf6N2E2_6030at 6847.773 kb on + strand, within Pf6N2E2_6030at 6847.774 kb on - strand, within Pf6N2E2_6030at 6848.083 kb on + strandat 6848.192 kb on + strandat 6848.193 kb on - strandat 6848.274 kb on - strand, within Pf6N2E2_6031at 6848.317 kb on + strand, within Pf6N2E2_6031at 6848.318 kb on - strand, within Pf6N2E2_6031at 6848.318 kb on - strand, within Pf6N2E2_6031at 6848.318 kb on - strand, within Pf6N2E2_6031at 6848.369 kb on - strand, within Pf6N2E2_6031at 6848.369 kb on - strand, within Pf6N2E2_6031at 6848.551 kb on + strand, within Pf6N2E2_6031at 6848.551 kb on + strand, within Pf6N2E2_6031at 6848.741 kb on + strandat 6848.741 kb on + strandat 6848.742 kb on - strandat 6848.742 kb on - strandat 6848.820 kb on + strandat 6848.820 kb on + strandat 6848.821 kb on - strandat 6848.821 kb on - strandat 6848.824 kb on + strandat 6848.824 kb on + strandat 6848.824 kb on + strandat 6848.824 kb on + strandat 6848.824 kb on + strandat 6848.824 kb on + strandat 6848.824 kb on + strandat 6848.824 kb on + strandat 6848.824 kb on + strandat 6848.824 kb on + strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.847 kb on + strandat 6848.847 kb on + strandat 6848.847 kb on + strandat 6848.893 kb on + strandat 6848.893 kb on + strandat 6848.926 kb on + strand, within Pf6N2E2_6032at 6848.926 kb on + strand, within Pf6N2E2_6032at 6848.926 kb on + strand, within Pf6N2E2_6032at 6848.927 kb on - strand, within Pf6N2E2_6032at 6848.927 kb on - strand, within Pf6N2E2_6032at 6848.927 kb on - strand, within Pf6N2E2_6032at 6849.037 kb on + strand, within Pf6N2E2_6032at 6849.038 kb on - strand, within Pf6N2E2_6032at 6849.038 kb on - strand, within Pf6N2E2_6032at 6849.187 kb on - strand, within Pf6N2E2_6032at 6849.278 kb on - strand, within Pf6N2E2_6032at 6849.278 kb on - strand, within Pf6N2E2_6032at 6849.283 kb on + strand, within Pf6N2E2_6032at 6849.283 kb on + strand, within Pf6N2E2_6032at 6849.313 kb on + strandat 6849.313 kb on + strandat 6849.313 kb on + strandat 6849.394 kb on + strandat 6849.450 kb on + strandat 6849.450 kb on + strandat 6849.451 kb on - strandat 6849.451 kb on - strandat 6849.451 kb on - strandat 6849.451 kb on - strandat 6849.552 kb on + strand, within Pf6N2E2_6033at 6849.553 kb on - strand, within Pf6N2E2_6033at 6849.678 kb on + strand, within Pf6N2E2_6033at 6849.678 kb on + strand, within Pf6N2E2_6033at 6849.678 kb on + strand, within Pf6N2E2_6033at 6849.678 kb on + strand, within Pf6N2E2_6033at 6849.681 kb on + strand, within Pf6N2E2_6033at 6849.681 kb on + strand, within Pf6N2E2_6033

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.4 mM
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6,847,510 - Pf6N2E2_6030 0.40 -1.2
6,847,654 + Pf6N2E2_6030 0.57 -0.1
6,847,654 + Pf6N2E2_6030 0.57 +0.5
6,847,654 + Pf6N2E2_6030 0.57 -0.1
6,847,655 - Pf6N2E2_6030 0.58 +1.1
6,847,773 + Pf6N2E2_6030 0.72 -0.2
6,847,774 - Pf6N2E2_6030 0.72 +3.1
6,848,083 + -0.7
6,848,192 + +1.1
6,848,193 - +1.4
6,848,274 - Pf6N2E2_6031 0.18 +0.1
6,848,317 + Pf6N2E2_6031 0.26 -0.5
6,848,318 - Pf6N2E2_6031 0.26 -0.7
6,848,318 - Pf6N2E2_6031 0.26 -0.5
6,848,318 - Pf6N2E2_6031 0.26 +0.8
6,848,369 - Pf6N2E2_6031 0.36 +0.5
6,848,369 - Pf6N2E2_6031 0.36 -0.5
6,848,551 + Pf6N2E2_6031 0.70 +0.1
6,848,551 + Pf6N2E2_6031 0.70 +0.1
6,848,741 + +1.5
6,848,741 + -1.0
6,848,742 - +1.1
6,848,742 - +0.1
6,848,820 + -0.9
6,848,820 + -1.8
6,848,821 - +1.1
6,848,821 - +0.5
6,848,824 + -1.2
6,848,824 + +0.9
6,848,824 + -0.9
6,848,824 + -1.1
6,848,824 + -0.9
6,848,824 + +0.3
6,848,824 + -1.7
6,848,824 + -0.5
6,848,824 + +0.8
6,848,824 + -0.4
6,848,825 - +0.8
6,848,825 - +0.9
6,848,825 - -0.5
6,848,825 - -0.3
6,848,825 - -0.5
6,848,825 - +1.1
6,848,825 - +0.3
6,848,825 - -1.2
6,848,825 - -0.5
6,848,825 - +0.4
6,848,825 - +1.3
6,848,847 + +0.3
6,848,847 + +0.1
6,848,847 + -0.5
6,848,893 + -1.7
6,848,893 + -0.2
6,848,926 + Pf6N2E2_6032 0.12 +0.1
6,848,926 + Pf6N2E2_6032 0.12 +0.2
6,848,926 + Pf6N2E2_6032 0.12 +0.1
6,848,927 - Pf6N2E2_6032 0.13 +1.8
6,848,927 - Pf6N2E2_6032 0.13 +0.1
6,848,927 - Pf6N2E2_6032 0.13 +0.1
6,849,037 + Pf6N2E2_6032 0.36 -0.3
6,849,038 - Pf6N2E2_6032 0.36 +0.5
6,849,038 - Pf6N2E2_6032 0.36 -0.4
6,849,187 - Pf6N2E2_6032 0.68 -0.8
6,849,278 - Pf6N2E2_6032 0.87 +0.5
6,849,278 - Pf6N2E2_6032 0.87 -1.5
6,849,283 + Pf6N2E2_6032 0.88 -0.5
6,849,283 + Pf6N2E2_6032 0.88 +0.1
6,849,313 + +2.1
6,849,313 + +1.5
6,849,313 + -0.5
6,849,394 + +0.1
6,849,450 + -0.4
6,849,450 + +2.1
6,849,451 - +1.1
6,849,451 - -1.5
6,849,451 - +0.1
6,849,451 - -0.1
6,849,552 + Pf6N2E2_6033 0.11 -0.9
6,849,553 - Pf6N2E2_6033 0.11 +1.1
6,849,678 + Pf6N2E2_6033 0.23 +0.5
6,849,678 + Pf6N2E2_6033 0.23 -0.3
6,849,678 + Pf6N2E2_6033 0.23 -1.1
6,849,678 + Pf6N2E2_6033 0.23 +0.3
6,849,681 + Pf6N2E2_6033 0.23 +0.4
6,849,681 + Pf6N2E2_6033 0.23 -0.1

Or see this region's nucleotide sequence