Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5441

Experiment: Cobalt chloride 0.4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5440 and Pf6N2E2_5441 are separated by 791 nucleotidesPf6N2E2_5441 and Pf6N2E2_5442 are separated by 495 nucleotides Pf6N2E2_5440 - Mobile element protein, at 6,245,999 to 6,247,267 _5440 Pf6N2E2_5441 - FIG00955104: hypothetical protein, at 6,248,059 to 6,248,289 _5441 Pf6N2E2_5442 - Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2), at 6,248,785 to 6,251,199 _5442 Position (kb) 6248 6249Strain fitness (log2 ratio) -2 -1 0 1at 6247.400 kb on - strandat 6247.400 kb on - strandat 6247.400 kb on - strandat 6247.536 kb on - strandat 6247.546 kb on + strandat 6247.547 kb on - strandat 6247.547 kb on - strandat 6247.547 kb on - strandat 6247.568 kb on + strandat 6247.568 kb on + strandat 6247.568 kb on + strandat 6247.568 kb on + strandat 6247.577 kb on + strandat 6247.577 kb on + strandat 6247.577 kb on + strandat 6247.577 kb on + strandat 6247.577 kb on + strandat 6247.577 kb on + strandat 6247.578 kb on - strandat 6247.578 kb on - strandat 6247.578 kb on - strandat 6247.578 kb on - strandat 6247.589 kb on + strandat 6247.589 kb on + strandat 6247.590 kb on - strandat 6247.590 kb on - strandat 6247.626 kb on + strandat 6247.626 kb on + strandat 6247.627 kb on - strandat 6247.627 kb on - strandat 6247.652 kb on + strandat 6247.653 kb on - strandat 6247.661 kb on + strandat 6247.661 kb on + strandat 6247.661 kb on + strandat 6247.662 kb on - strandat 6247.662 kb on - strandat 6247.662 kb on - strandat 6247.662 kb on - strandat 6247.662 kb on - strandat 6247.687 kb on + strandat 6247.688 kb on - strandat 6247.688 kb on - strandat 6247.688 kb on - strandat 6247.748 kb on + strandat 6247.748 kb on + strandat 6247.749 kb on - strandat 6247.749 kb on - strandat 6247.749 kb on - strandat 6247.962 kb on - strandat 6247.962 kb on - strandat 6247.962 kb on - strandat 6247.962 kb on - strandat 6247.962 kb on - strandat 6248.093 kb on + strand, within Pf6N2E2_5441at 6248.093 kb on + strand, within Pf6N2E2_5441at 6248.094 kb on - strand, within Pf6N2E2_5441at 6248.216 kb on + strand, within Pf6N2E2_5441at 6248.216 kb on + strand, within Pf6N2E2_5441at 6248.216 kb on + strand, within Pf6N2E2_5441at 6248.216 kb on + strand, within Pf6N2E2_5441at 6248.216 kb on + strand, within Pf6N2E2_5441at 6248.216 kb on + strand, within Pf6N2E2_5441at 6248.217 kb on - strand, within Pf6N2E2_5441at 6248.217 kb on - strand, within Pf6N2E2_5441at 6248.217 kb on - strand, within Pf6N2E2_5441at 6248.217 kb on - strand, within Pf6N2E2_5441at 6248.313 kb on + strandat 6248.356 kb on + strandat 6248.356 kb on + strandat 6248.356 kb on + strandat 6248.357 kb on - strandat 6248.357 kb on - strandat 6248.357 kb on - strandat 6248.436 kb on - strandat 6248.436 kb on - strandat 6248.492 kb on + strandat 6248.734 kb on + strandat 6248.734 kb on + strandat 6248.734 kb on + strandat 6248.734 kb on + strandat 6248.735 kb on - strandat 6248.735 kb on - strandat 6248.735 kb on - strandat 6248.743 kb on + strandat 6248.743 kb on + strandat 6248.743 kb on + strandat 6248.743 kb on + strandat 6248.743 kb on + strandat 6248.743 kb on + strandat 6248.744 kb on - strandat 6248.744 kb on - strandat 6248.744 kb on - strandat 6248.744 kb on - strandat 6248.762 kb on - strandat 6248.784 kb on + strandat 6248.785 kb on - strandat 6248.785 kb on - strandat 6248.785 kb on - strandat 6248.785 kb on - strandat 6248.785 kb on - strandat 6248.849 kb on + strandat 6248.849 kb on + strandat 6248.849 kb on + strandat 6248.849 kb on + strandat 6248.849 kb on + strandat 6248.850 kb on - strandat 6248.850 kb on - strandat 6248.850 kb on - strandat 6248.850 kb on - strandat 6248.850 kb on - strandat 6248.850 kb on - strandat 6248.914 kb on + strandat 6248.914 kb on + strandat 6248.914 kb on + strandat 6248.914 kb on + strandat 6248.915 kb on - strandat 6248.915 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.4 mM
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6,247,400 - -1.3
6,247,400 - +0.3
6,247,400 - -0.7
6,247,536 - +0.6
6,247,546 + -0.7
6,247,547 - +0.9
6,247,547 - +0.0
6,247,547 - +0.4
6,247,568 + +1.3
6,247,568 + -1.9
6,247,568 + +1.3
6,247,568 + +0.5
6,247,577 + -0.4
6,247,577 + -0.4
6,247,577 + -0.1
6,247,577 + +1.3
6,247,577 + +0.3
6,247,577 + +1.3
6,247,578 - +0.3
6,247,578 - -2.1
6,247,578 - +0.4
6,247,578 - +1.2
6,247,589 + -0.7
6,247,589 + +1.6
6,247,590 - -1.4
6,247,590 - -2.1
6,247,626 + -0.3
6,247,626 + -1.1
6,247,627 - -0.1
6,247,627 - +0.8
6,247,652 + +0.3
6,247,653 - -1.1
6,247,661 + +0.1
6,247,661 + -0.1
6,247,661 + +0.3
6,247,662 - -0.0
6,247,662 - +0.3
6,247,662 - -1.7
6,247,662 - -1.1
6,247,662 - +0.6
6,247,687 + -1.3
6,247,688 - -0.3
6,247,688 - +1.3
6,247,688 - +0.1
6,247,748 + -1.7
6,247,748 + -1.9
6,247,749 - +1.0
6,247,749 - +0.5
6,247,749 - +0.2
6,247,962 - +0.0
6,247,962 - +0.6
6,247,962 - -0.3
6,247,962 - -1.4
6,247,962 - -0.1
6,248,093 + Pf6N2E2_5441 0.15 +1.6
6,248,093 + Pf6N2E2_5441 0.15 +1.3
6,248,094 - Pf6N2E2_5441 0.15 -0.6
6,248,216 + Pf6N2E2_5441 0.68 -0.7
6,248,216 + Pf6N2E2_5441 0.68 +1.2
6,248,216 + Pf6N2E2_5441 0.68 -0.5
6,248,216 + Pf6N2E2_5441 0.68 +0.7
6,248,216 + Pf6N2E2_5441 0.68 +0.8
6,248,216 + Pf6N2E2_5441 0.68 +0.6
6,248,217 - Pf6N2E2_5441 0.68 +0.0
6,248,217 - Pf6N2E2_5441 0.68 +0.3
6,248,217 - Pf6N2E2_5441 0.68 +0.1
6,248,217 - Pf6N2E2_5441 0.68 -0.1
6,248,313 + +0.4
6,248,356 + +0.8
6,248,356 + -0.7
6,248,356 + -0.3
6,248,357 - +1.6
6,248,357 - +1.3
6,248,357 - -1.7
6,248,436 - +0.9
6,248,436 - -0.7
6,248,492 + +1.4
6,248,734 + +0.3
6,248,734 + -0.1
6,248,734 + -0.3
6,248,734 + +0.3
6,248,735 - -2.1
6,248,735 - -1.3
6,248,735 - -0.7
6,248,743 + +0.6
6,248,743 + -0.4
6,248,743 + -0.7
6,248,743 + +0.3
6,248,743 + +0.3
6,248,743 + +0.5
6,248,744 - -0.1
6,248,744 - +0.5
6,248,744 - +0.7
6,248,744 - +0.8
6,248,762 - -0.1
6,248,784 + -2.5
6,248,785 - +0.9
6,248,785 - +0.0
6,248,785 - +0.9
6,248,785 - -0.4
6,248,785 - -0.1
6,248,849 + -0.9
6,248,849 + -1.3
6,248,849 + -1.1
6,248,849 + +1.3
6,248,849 + +0.3
6,248,850 - -1.1
6,248,850 - +1.3
6,248,850 - -0.1
6,248,850 - +0.5
6,248,850 - -0.1
6,248,850 - +0.5
6,248,914 + +0.4
6,248,914 + +0.0
6,248,914 + -1.0
6,248,914 + +1.3
6,248,915 - -0.3
6,248,915 - -0.3

Or see this region's nucleotide sequence