Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4114

Experiment: Cobalt chloride 0.4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4112 and Pf6N2E2_4113 are separated by 86 nucleotidesPf6N2E2_4113 and Pf6N2E2_4114 are separated by 122 nucleotides Pf6N2E2_4112 - NADPH:quinone oxidoreductase 2, at 4,790,694 to 4,791,533 _4112 Pf6N2E2_4113 - Redox-sensing transcriptional regulator QorR, at 4,791,620 to 4,792,030 _4113 Pf6N2E2_4114 - hypothetical protein, at 4,792,153 to 4,792,368 _4114 Position (kb) 4792 4793Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4791.232 kb on + strand, within Pf6N2E2_4112at 4791.232 kb on + strand, within Pf6N2E2_4112at 4791.232 kb on + strand, within Pf6N2E2_4112at 4791.232 kb on + strand, within Pf6N2E2_4112at 4791.233 kb on - strand, within Pf6N2E2_4112at 4791.233 kb on - strand, within Pf6N2E2_4112at 4791.233 kb on - strand, within Pf6N2E2_4112at 4791.332 kb on + strand, within Pf6N2E2_4112at 4791.376 kb on + strand, within Pf6N2E2_4112at 4791.377 kb on - strand, within Pf6N2E2_4112at 4791.540 kb on + strandat 4791.540 kb on + strandat 4791.540 kb on + strandat 4791.540 kb on + strandat 4791.540 kb on + strandat 4791.540 kb on + strandat 4791.540 kb on + strandat 4791.540 kb on + strandat 4791.540 kb on + strandat 4791.541 kb on - strandat 4791.541 kb on - strandat 4791.541 kb on - strandat 4791.541 kb on - strandat 4791.541 kb on - strandat 4791.572 kb on + strandat 4791.572 kb on + strandat 4791.572 kb on + strandat 4791.572 kb on + strandat 4791.572 kb on + strandat 4791.572 kb on + strandat 4791.573 kb on - strandat 4791.580 kb on + strandat 4791.599 kb on - strandat 4791.599 kb on - strandat 4791.606 kb on + strandat 4791.607 kb on - strandat 4791.613 kb on - strandat 4791.613 kb on - strandat 4791.616 kb on + strandat 4791.616 kb on + strandat 4791.902 kb on + strand, within Pf6N2E2_4113at 4791.903 kb on - strand, within Pf6N2E2_4113at 4791.903 kb on - strand, within Pf6N2E2_4113at 4791.985 kb on + strand, within Pf6N2E2_4113at 4792.066 kb on + strandat 4792.066 kb on + strandat 4792.067 kb on - strandat 4792.067 kb on - strandat 4792.115 kb on + strandat 4792.116 kb on - strandat 4792.119 kb on + strandat 4792.119 kb on + strandat 4792.119 kb on + strandat 4792.230 kb on + strand, within Pf6N2E2_4114at 4792.285 kb on + strand, within Pf6N2E2_4114at 4792.285 kb on + strand, within Pf6N2E2_4114at 4792.285 kb on + strand, within Pf6N2E2_4114at 4792.286 kb on - strand, within Pf6N2E2_4114at 4792.286 kb on - strand, within Pf6N2E2_4114at 4792.306 kb on + strand, within Pf6N2E2_4114at 4792.306 kb on + strand, within Pf6N2E2_4114at 4792.307 kb on - strand, within Pf6N2E2_4114at 4792.313 kb on + strand, within Pf6N2E2_4114at 4792.357 kb on + strandat 4792.358 kb on - strandat 4792.359 kb on + strandat 4792.359 kb on + strandat 4792.507 kb on - strandat 4792.510 kb on + strandat 4792.655 kb on - strandat 4792.695 kb on - strandat 4792.695 kb on - strandat 4792.751 kb on - strandat 4792.770 kb on + strandat 4792.842 kb on + strandat 4792.847 kb on + strandat 4792.981 kb on + strandat 4792.984 kb on - strandat 4792.984 kb on - strandat 4792.987 kb on + strandat 4792.987 kb on + strandat 4792.987 kb on + strandat 4792.987 kb on + strandat 4793.029 kb on + strandat 4793.083 kb on + strandat 4793.084 kb on - strandat 4793.084 kb on - strandat 4793.117 kb on + strandat 4793.118 kb on - strandat 4793.118 kb on - strandat 4793.170 kb on + strandat 4793.170 kb on + strandat 4793.170 kb on + strandat 4793.171 kb on - strandat 4793.171 kb on - strandat 4793.171 kb on - strandat 4793.183 kb on + strandat 4793.184 kb on - strandat 4793.206 kb on + strandat 4793.233 kb on + strandat 4793.234 kb on - strandat 4793.353 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.4 mM
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4,791,232 + Pf6N2E2_4112 0.64 +0.5
4,791,232 + Pf6N2E2_4112 0.64 +0.8
4,791,232 + Pf6N2E2_4112 0.64 -0.2
4,791,232 + Pf6N2E2_4112 0.64 +0.1
4,791,233 - Pf6N2E2_4112 0.64 -0.5
4,791,233 - Pf6N2E2_4112 0.64 +0.4
4,791,233 - Pf6N2E2_4112 0.64 +0.3
4,791,332 + Pf6N2E2_4112 0.76 -0.3
4,791,376 + Pf6N2E2_4112 0.81 -1.3
4,791,377 - Pf6N2E2_4112 0.81 +1.7
4,791,540 + +0.5
4,791,540 + -1.0
4,791,540 + -0.1
4,791,540 + +0.6
4,791,540 + -0.5
4,791,540 + -0.6
4,791,540 + -0.0
4,791,540 + +1.1
4,791,540 + -1.3
4,791,541 - +0.1
4,791,541 - +0.3
4,791,541 - +0.4
4,791,541 - +0.2
4,791,541 - -0.6
4,791,572 + +0.4
4,791,572 + -0.1
4,791,572 + -0.3
4,791,572 + -0.1
4,791,572 + +0.5
4,791,572 + -0.2
4,791,573 - -1.2
4,791,580 + +0.1
4,791,599 - +1.9
4,791,599 - +0.0
4,791,606 + +0.2
4,791,607 - +0.5
4,791,613 - -0.1
4,791,613 - -0.2
4,791,616 + +0.9
4,791,616 + +1.0
4,791,902 + Pf6N2E2_4113 0.69 -0.5
4,791,903 - Pf6N2E2_4113 0.69 -1.4
4,791,903 - Pf6N2E2_4113 0.69 +0.3
4,791,985 + Pf6N2E2_4113 0.89 -0.4
4,792,066 + +0.2
4,792,066 + +0.5
4,792,067 - -0.1
4,792,067 - +0.1
4,792,115 + -1.1
4,792,116 - +0.1
4,792,119 + +2.6
4,792,119 + -0.2
4,792,119 + +0.1
4,792,230 + Pf6N2E2_4114 0.36 +0.7
4,792,285 + Pf6N2E2_4114 0.61 +0.5
4,792,285 + Pf6N2E2_4114 0.61 -0.2
4,792,285 + Pf6N2E2_4114 0.61 +0.2
4,792,286 - Pf6N2E2_4114 0.62 -0.4
4,792,286 - Pf6N2E2_4114 0.62 +0.6
4,792,306 + Pf6N2E2_4114 0.71 +0.5
4,792,306 + Pf6N2E2_4114 0.71 -1.4
4,792,307 - Pf6N2E2_4114 0.71 +0.3
4,792,313 + Pf6N2E2_4114 0.74 -0.0
4,792,357 + +0.6
4,792,358 - -2.3
4,792,359 + -1.1
4,792,359 + +0.4
4,792,507 - -0.6
4,792,510 + +0.7
4,792,655 - -2.0
4,792,695 - -2.0
4,792,695 - +0.2
4,792,751 - +0.0
4,792,770 + +1.6
4,792,842 + +2.6
4,792,847 + -1.2
4,792,981 + -2.3
4,792,984 - +3.2
4,792,984 - +0.3
4,792,987 + +0.3
4,792,987 + +0.6
4,792,987 + -0.8
4,792,987 + -0.7
4,793,029 + +0.0
4,793,083 + +1.0
4,793,084 - -1.2
4,793,084 - -1.4
4,793,117 + -0.3
4,793,118 - +0.4
4,793,118 - -1.0
4,793,170 + +1.3
4,793,170 + +0.1
4,793,170 + +0.6
4,793,171 - -0.4
4,793,171 - +1.1
4,793,171 - -2.1
4,793,183 + +0.3
4,793,184 - -0.6
4,793,206 + -0.3
4,793,233 + +1.2
4,793,234 - +2.6
4,793,353 + -0.2

Or see this region's nucleotide sequence