Experiment: Cobalt chloride 0.4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3360 and Pf6N2E2_3361 are separated by 106 nucleotides Pf6N2E2_3361 and Pf6N2E2_3362 are separated by 10 nucleotides Pf6N2E2_3362 and Pf6N2E2_3363 are separated by 28 nucleotides Pf6N2E2_3363 and Pf6N2E2_3364 overlap by 4 nucleotides
Pf6N2E2_3360 - Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-), at 3,891,748 to 3,892,398
_3360
Pf6N2E2_3361 - FIG004454: RNA binding protein, at 3,892,505 to 3,892,813
_3361
Pf6N2E2_3362 - hypothetical protein, at 3,892,824 to 3,893,228
_3362
Pf6N2E2_3363 - Transcription elongation factor GreA, at 3,893,257 to 3,893,739
_3363
Pf6N2E2_3364 - Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), at 3,893,736 to 3,896,957
_3364
Position (kb)
3892
3893
3894 Strain fitness (log2 ratio)
-2
-1
0
1 at 3892.910 kb on - strand, within Pf6N2E2_3362 at 3892.910 kb on - strand, within Pf6N2E2_3362 at 3893.020 kb on - strand, within Pf6N2E2_3362 at 3893.020 kb on - strand, within Pf6N2E2_3362 at 3893.020 kb on - strand, within Pf6N2E2_3362 at 3893.020 kb on - strand, within Pf6N2E2_3362 at 3893.020 kb on - strand, within Pf6N2E2_3362 at 3893.421 kb on - strand, within Pf6N2E2_3363 at 3893.758 kb on - strand at 3893.758 kb on - strand at 3893.758 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.4 mM remove 3,892,910 - Pf6N2E2_3362 0.21 -0.7 3,892,910 - Pf6N2E2_3362 0.21 -0.9 3,893,020 - Pf6N2E2_3362 0.48 +0.9 3,893,020 - Pf6N2E2_3362 0.48 -1.8 3,893,020 - Pf6N2E2_3362 0.48 -1.0 3,893,020 - Pf6N2E2_3362 0.48 -0.7 3,893,020 - Pf6N2E2_3362 0.48 -0.7 3,893,421 - Pf6N2E2_3363 0.34 -0.7 3,893,758 - +0.4 3,893,758 - -0.3 3,893,758 - -0.2
Or see this region's nucleotide sequence