Experiment: Cobalt chloride 0.4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2635 and Pf6N2E2_2636 are separated by 320 nucleotides Pf6N2E2_2636 and Pf6N2E2_2637 are separated by 12 nucleotides Pf6N2E2_2637 and Pf6N2E2_2638 are separated by 156 nucleotides
Pf6N2E2_2635 - Transcriptional regulator, AraC family, at 3,097,500 to 3,098,561
_2635
Pf6N2E2_2636 - FIG027190: Putative transmembrane protein, at 3,098,882 to 3,099,193
_2636
Pf6N2E2_2637 - Metal-dependent phosphohydrolase, HD subdomain, at 3,099,206 to 3,099,793
_2637
Pf6N2E2_2638 - Ser/Thr protein phosphatase family protein, UDP-2,3-diacylglucosamine hydrolase (EC 3.6.1.-) homolog, at 3,099,950 to 3,100,765
_2638
Position (kb)
3098
3099
3100 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3097.894 kb on + strand, within Pf6N2E2_2635 at 3097.894 kb on + strand, within Pf6N2E2_2635 at 3097.895 kb on - strand, within Pf6N2E2_2635 at 3097.990 kb on + strand, within Pf6N2E2_2635 at 3097.991 kb on - strand, within Pf6N2E2_2635 at 3098.345 kb on + strand, within Pf6N2E2_2635 at 3098.345 kb on + strand, within Pf6N2E2_2635 at 3098.346 kb on - strand, within Pf6N2E2_2635 at 3098.613 kb on + strand at 3098.614 kb on - strand at 3098.630 kb on - strand at 3098.763 kb on + strand at 3098.776 kb on + strand at 3098.776 kb on + strand at 3098.777 kb on - strand at 3098.931 kb on - strand, within Pf6N2E2_2636 at 3099.158 kb on + strand, within Pf6N2E2_2636 at 3099.158 kb on + strand, within Pf6N2E2_2636 at 3099.159 kb on - strand, within Pf6N2E2_2636 at 3099.191 kb on + strand at 3099.191 kb on + strand at 3099.192 kb on - strand at 3099.425 kb on + strand, within Pf6N2E2_2637 at 3099.425 kb on + strand, within Pf6N2E2_2637 at 3099.425 kb on + strand, within Pf6N2E2_2637 at 3099.425 kb on + strand, within Pf6N2E2_2637 at 3099.426 kb on - strand, within Pf6N2E2_2637 at 3099.426 kb on - strand, within Pf6N2E2_2637 at 3099.426 kb on - strand, within Pf6N2E2_2637 at 3099.473 kb on + strand, within Pf6N2E2_2637 at 3099.473 kb on + strand, within Pf6N2E2_2637 at 3099.473 kb on + strand, within Pf6N2E2_2637 at 3099.473 kb on + strand, within Pf6N2E2_2637 at 3099.474 kb on - strand, within Pf6N2E2_2637 at 3099.474 kb on - strand, within Pf6N2E2_2637 at 3099.474 kb on - strand, within Pf6N2E2_2637 at 3099.474 kb on - strand, within Pf6N2E2_2637 at 3099.566 kb on + strand, within Pf6N2E2_2637 at 3099.566 kb on + strand, within Pf6N2E2_2637 at 3099.567 kb on - strand, within Pf6N2E2_2637 at 3099.567 kb on - strand, within Pf6N2E2_2637 at 3099.567 kb on - strand, within Pf6N2E2_2637 at 3099.569 kb on + strand, within Pf6N2E2_2637 at 3099.569 kb on + strand, within Pf6N2E2_2637 at 3099.569 kb on + strand, within Pf6N2E2_2637 at 3099.570 kb on - strand, within Pf6N2E2_2637 at 3099.570 kb on - strand, within Pf6N2E2_2637 at 3099.570 kb on - strand, within Pf6N2E2_2637 at 3099.570 kb on - strand, within Pf6N2E2_2637 at 3099.570 kb on - strand, within Pf6N2E2_2637 at 3099.570 kb on - strand, within Pf6N2E2_2637 at 3099.662 kb on + strand, within Pf6N2E2_2637 at 3099.663 kb on - strand, within Pf6N2E2_2637 at 3099.663 kb on - strand, within Pf6N2E2_2637 at 3099.761 kb on + strand at 3099.761 kb on + strand at 3099.761 kb on + strand at 3099.761 kb on + strand at 3099.762 kb on - strand at 3099.762 kb on - strand at 3099.762 kb on - strand at 3099.762 kb on - strand at 3099.762 kb on - strand at 3099.762 kb on - strand at 3099.762 kb on - strand at 3099.783 kb on + strand at 3099.784 kb on - strand at 3099.798 kb on + strand at 3099.798 kb on + strand at 3099.799 kb on - strand at 3099.799 kb on - strand at 3099.799 kb on - strand at 3099.799 kb on - strand at 3099.799 kb on - strand at 3099.799 kb on - strand at 3099.861 kb on + strand at 3099.878 kb on + strand at 3099.879 kb on - strand at 3099.879 kb on - strand at 3099.879 kb on - strand at 3099.885 kb on + strand at 3099.885 kb on + strand at 3099.921 kb on - strand at 3099.921 kb on - strand at 3099.944 kb on + strand at 3099.944 kb on + strand at 3099.945 kb on - strand at 3099.945 kb on - strand at 3099.945 kb on - strand at 3100.018 kb on - strand at 3100.018 kb on - strand at 3100.090 kb on - strand, within Pf6N2E2_2638 at 3100.129 kb on + strand, within Pf6N2E2_2638
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.4 mM remove 3,097,894 + Pf6N2E2_2635 0.37 +0.7 3,097,894 + Pf6N2E2_2635 0.37 +0.6 3,097,895 - Pf6N2E2_2635 0.37 +0.3 3,097,990 + Pf6N2E2_2635 0.46 -0.0 3,097,991 - Pf6N2E2_2635 0.46 +0.2 3,098,345 + Pf6N2E2_2635 0.80 -0.3 3,098,345 + Pf6N2E2_2635 0.80 +1.2 3,098,346 - Pf6N2E2_2635 0.80 +0.5 3,098,613 + -0.1 3,098,614 - -0.2 3,098,630 - -0.8 3,098,763 + -1.7 3,098,776 + -1.8 3,098,776 + +0.7 3,098,777 - +0.2 3,098,931 - Pf6N2E2_2636 0.16 +0.2 3,099,158 + Pf6N2E2_2636 0.88 +0.8 3,099,158 + Pf6N2E2_2636 0.88 -0.3 3,099,159 - Pf6N2E2_2636 0.89 -2.8 3,099,191 + +1.3 3,099,191 + +0.3 3,099,192 - -1.4 3,099,425 + Pf6N2E2_2637 0.37 +0.2 3,099,425 + Pf6N2E2_2637 0.37 +1.7 3,099,425 + Pf6N2E2_2637 0.37 -0.0 3,099,425 + Pf6N2E2_2637 0.37 -0.8 3,099,426 - Pf6N2E2_2637 0.37 -0.7 3,099,426 - Pf6N2E2_2637 0.37 -0.6 3,099,426 - Pf6N2E2_2637 0.37 +0.8 3,099,473 + Pf6N2E2_2637 0.45 +1.2 3,099,473 + Pf6N2E2_2637 0.45 +0.4 3,099,473 + Pf6N2E2_2637 0.45 -0.3 3,099,473 + Pf6N2E2_2637 0.45 +1.5 3,099,474 - Pf6N2E2_2637 0.46 +0.2 3,099,474 - Pf6N2E2_2637 0.46 +0.2 3,099,474 - Pf6N2E2_2637 0.46 -0.6 3,099,474 - Pf6N2E2_2637 0.46 -1.3 3,099,566 + Pf6N2E2_2637 0.61 +1.2 3,099,566 + Pf6N2E2_2637 0.61 -1.2 3,099,567 - Pf6N2E2_2637 0.61 -0.5 3,099,567 - Pf6N2E2_2637 0.61 +0.7 3,099,567 - Pf6N2E2_2637 0.61 +0.7 3,099,569 + Pf6N2E2_2637 0.62 -0.4 3,099,569 + Pf6N2E2_2637 0.62 -0.0 3,099,569 + Pf6N2E2_2637 0.62 +2.2 3,099,570 - Pf6N2E2_2637 0.62 +0.9 3,099,570 - Pf6N2E2_2637 0.62 -0.6 3,099,570 - Pf6N2E2_2637 0.62 +0.4 3,099,570 - Pf6N2E2_2637 0.62 -1.2 3,099,570 - Pf6N2E2_2637 0.62 -0.4 3,099,570 - Pf6N2E2_2637 0.62 +0.1 3,099,662 + Pf6N2E2_2637 0.78 -1.2 3,099,663 - Pf6N2E2_2637 0.78 +0.4 3,099,663 - Pf6N2E2_2637 0.78 -0.6 3,099,761 + +0.8 3,099,761 + -0.2 3,099,761 + -0.1 3,099,761 + -0.7 3,099,762 - -2.2 3,099,762 - -0.1 3,099,762 - +0.5 3,099,762 - +0.6 3,099,762 - -1.4 3,099,762 - -0.6 3,099,762 - -0.3 3,099,783 + -0.3 3,099,784 - +0.1 3,099,798 + -2.0 3,099,798 + -1.2 3,099,799 - -0.2 3,099,799 - -0.3 3,099,799 - -0.7 3,099,799 - -0.4 3,099,799 - +1.0 3,099,799 - -0.3 3,099,861 + +0.2 3,099,878 + +0.0 3,099,879 - +1.6 3,099,879 - +1.2 3,099,879 - -1.4 3,099,885 + -1.0 3,099,885 + +0.7 3,099,921 - +0.6 3,099,921 - -0.7 3,099,944 + -0.2 3,099,944 + +1.2 3,099,945 - +1.2 3,099,945 - +0.5 3,099,945 - -0.8 3,100,018 - -0.6 3,100,018 - -0.0 3,100,090 - Pf6N2E2_2638 0.17 -0.1 3,100,129 + Pf6N2E2_2638 0.22 -0.6
Or see this region's nucleotide sequence