Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_193

Experiment: Cobalt chloride 0.4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_192 and Pf6N2E2_193 are separated by 377 nucleotidesPf6N2E2_193 and Pf6N2E2_194 overlap by 36 nucleotidesPf6N2E2_194 and Pf6N2E2_195 overlap by 4 nucleotides Pf6N2E2_192 - hypothetical protein, at 244,676 to 246,115 _192 Pf6N2E2_193 - hypothetical protein, at 246,493 to 246,870 _193 Pf6N2E2_194 - Alcohol dehydrogenase (EC 1.1.1.1), at 246,835 to 247,569 _194 Pf6N2E2_195 - hypothetical protein, at 247,566 to 249,515 _195 Position (kb) 246 247Strain fitness (log2 ratio) -2 -1 0 1 2 3at 245.591 kb on + strand, within Pf6N2E2_192at 245.591 kb on + strand, within Pf6N2E2_192at 245.591 kb on + strand, within Pf6N2E2_192at 245.592 kb on - strand, within Pf6N2E2_192at 245.592 kb on - strand, within Pf6N2E2_192at 245.780 kb on - strand, within Pf6N2E2_192at 245.833 kb on + strand, within Pf6N2E2_192at 245.834 kb on - strand, within Pf6N2E2_192at 245.861 kb on + strand, within Pf6N2E2_192at 246.091 kb on - strandat 246.091 kb on - strandat 246.173 kb on + strandat 246.173 kb on + strandat 246.174 kb on - strandat 246.174 kb on - strandat 246.249 kb on - strandat 246.253 kb on + strandat 246.254 kb on - strandat 246.254 kb on - strandat 246.254 kb on - strandat 246.254 kb on - strandat 246.286 kb on + strandat 246.286 kb on + strandat 246.304 kb on + strandat 246.304 kb on + strandat 246.304 kb on + strandat 246.305 kb on - strandat 246.305 kb on - strandat 246.305 kb on - strandat 246.305 kb on - strandat 246.305 kb on - strandat 246.353 kb on - strandat 246.462 kb on + strandat 246.465 kb on + strandat 246.465 kb on + strandat 246.465 kb on + strandat 246.498 kb on + strandat 246.498 kb on + strandat 246.500 kb on + strandat 246.511 kb on + strandat 246.511 kb on + strandat 246.512 kb on - strandat 246.517 kb on - strandat 246.539 kb on + strand, within Pf6N2E2_193at 246.539 kb on + strand, within Pf6N2E2_193at 246.539 kb on + strand, within Pf6N2E2_193at 246.544 kb on + strand, within Pf6N2E2_193at 246.544 kb on + strand, within Pf6N2E2_193at 246.772 kb on - strand, within Pf6N2E2_193at 246.889 kb on + strandat 246.889 kb on + strandat 246.889 kb on + strandat 246.890 kb on - strandat 247.116 kb on + strand, within Pf6N2E2_194at 247.117 kb on - strand, within Pf6N2E2_194at 247.205 kb on + strand, within Pf6N2E2_194at 247.215 kb on + strand, within Pf6N2E2_194at 247.216 kb on - strand, within Pf6N2E2_194at 247.376 kb on - strand, within Pf6N2E2_194at 247.376 kb on - strand, within Pf6N2E2_194at 247.376 kb on - strand, within Pf6N2E2_194at 247.376 kb on - strand, within Pf6N2E2_194at 247.645 kb on + strandat 247.652 kb on - strandat 247.652 kb on - strandat 247.751 kb on + strandat 247.861 kb on + strand, within Pf6N2E2_195at 247.861 kb on + strand, within Pf6N2E2_195at 247.861 kb on + strand, within Pf6N2E2_195at 247.861 kb on + strand, within Pf6N2E2_195at 247.861 kb on + strand, within Pf6N2E2_195at 247.861 kb on + strand, within Pf6N2E2_195at 247.861 kb on + strand, within Pf6N2E2_195at 247.861 kb on + strand, within Pf6N2E2_195at 247.861 kb on + strand, within Pf6N2E2_195at 247.861 kb on + strand, within Pf6N2E2_195at 247.862 kb on - strand, within Pf6N2E2_195at 247.862 kb on - strand, within Pf6N2E2_195at 247.862 kb on - strand, within Pf6N2E2_195at 247.862 kb on - strand, within Pf6N2E2_195

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.4 mM
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245,591 + Pf6N2E2_192 0.64 +0.7
245,591 + Pf6N2E2_192 0.64 -0.0
245,591 + Pf6N2E2_192 0.64 -0.6
245,592 - Pf6N2E2_192 0.64 +1.3
245,592 - Pf6N2E2_192 0.64 +0.4
245,780 - Pf6N2E2_192 0.77 -1.0
245,833 + Pf6N2E2_192 0.80 +0.1
245,834 - Pf6N2E2_192 0.80 -1.2
245,861 + Pf6N2E2_192 0.82 +0.7
246,091 - -1.6
246,091 - -0.6
246,173 + +0.4
246,173 + +0.3
246,174 - -0.5
246,174 - -0.2
246,249 - +0.2
246,253 + -1.2
246,254 - +1.8
246,254 - +0.4
246,254 - -0.0
246,254 - -0.4
246,286 + +0.2
246,286 + +0.4
246,304 + +0.4
246,304 + +1.0
246,304 + +0.0
246,305 - +0.2
246,305 - -0.5
246,305 - +0.7
246,305 - -0.8
246,305 - +0.2
246,353 - +1.0
246,462 + -0.4
246,465 + +1.0
246,465 + -0.0
246,465 + -0.0
246,498 + +1.5
246,498 + -0.4
246,500 + -0.0
246,511 + -0.0
246,511 + +2.5
246,512 - -1.3
246,517 - -0.0
246,539 + Pf6N2E2_193 0.12 -1.5
246,539 + Pf6N2E2_193 0.12 +0.2
246,539 + Pf6N2E2_193 0.12 -1.4
246,544 + Pf6N2E2_193 0.13 -0.6
246,544 + Pf6N2E2_193 0.13 -0.4
246,772 - Pf6N2E2_193 0.74 -2.6
246,889 + +0.4
246,889 + +0.6
246,889 + -1.0
246,890 - +2.0
247,116 + Pf6N2E2_194 0.38 +0.1
247,117 - Pf6N2E2_194 0.38 -1.0
247,205 + Pf6N2E2_194 0.50 +1.0
247,215 + Pf6N2E2_194 0.52 -1.0
247,216 - Pf6N2E2_194 0.52 +1.9
247,376 - Pf6N2E2_194 0.74 +0.6
247,376 - Pf6N2E2_194 0.74 +0.4
247,376 - Pf6N2E2_194 0.74 +1.0
247,376 - Pf6N2E2_194 0.74 +0.1
247,645 + +0.4
247,652 - +0.6
247,652 - -0.0
247,751 + -0.1
247,861 + Pf6N2E2_195 0.15 +3.3
247,861 + Pf6N2E2_195 0.15 -0.8
247,861 + Pf6N2E2_195 0.15 -1.4
247,861 + Pf6N2E2_195 0.15 -1.4
247,861 + Pf6N2E2_195 0.15 -0.0
247,861 + Pf6N2E2_195 0.15 -0.0
247,861 + Pf6N2E2_195 0.15 +0.5
247,861 + Pf6N2E2_195 0.15 +1.0
247,861 + Pf6N2E2_195 0.15 -2.5
247,861 + Pf6N2E2_195 0.15 -0.4
247,862 - Pf6N2E2_195 0.15 +0.5
247,862 - Pf6N2E2_195 0.15 -1.2
247,862 - Pf6N2E2_195 0.15 +0.8
247,862 - Pf6N2E2_195 0.15 -1.0

Or see this region's nucleotide sequence