Experiment: Cobalt chloride 0.4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1331 and Pf6N2E2_1332 are separated by 12 nucleotides Pf6N2E2_1332 and Pf6N2E2_1333 are separated by 69 nucleotides
Pf6N2E2_1331 - General substrate transporter:Major facilitator superfamily, at 1,566,485 to 1,567,741
_1331
Pf6N2E2_1332 - Protein involved in meta-pathway of phenol degradation, at 1,567,754 to 1,568,686
_1332
Pf6N2E2_1333 - Ethanolamine operon regulatory protein, at 1,568,756 to 1,569,748
_1333
Position (kb)
1567
1568
1569 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1566.808 kb on - strand, within Pf6N2E2_1331 at 1566.808 kb on - strand, within Pf6N2E2_1331 at 1567.194 kb on + strand, within Pf6N2E2_1331 at 1567.195 kb on - strand, within Pf6N2E2_1331 at 1567.195 kb on - strand, within Pf6N2E2_1331 at 1567.323 kb on + strand, within Pf6N2E2_1331 at 1567.324 kb on - strand, within Pf6N2E2_1331 at 1567.447 kb on - strand, within Pf6N2E2_1331 at 1567.755 kb on + strand at 1567.772 kb on - strand at 1567.786 kb on + strand at 1567.824 kb on + strand at 1567.824 kb on + strand at 1567.824 kb on + strand at 1567.825 kb on - strand at 1567.863 kb on + strand, within Pf6N2E2_1332 at 1567.863 kb on + strand, within Pf6N2E2_1332 at 1567.863 kb on + strand, within Pf6N2E2_1332 at 1567.863 kb on + strand, within Pf6N2E2_1332 at 1567.864 kb on - strand, within Pf6N2E2_1332 at 1567.864 kb on - strand, within Pf6N2E2_1332 at 1567.948 kb on - strand, within Pf6N2E2_1332 at 1567.950 kb on + strand, within Pf6N2E2_1332 at 1567.950 kb on + strand, within Pf6N2E2_1332 at 1567.951 kb on - strand, within Pf6N2E2_1332 at 1568.031 kb on + strand, within Pf6N2E2_1332 at 1568.031 kb on + strand, within Pf6N2E2_1332 at 1568.032 kb on - strand, within Pf6N2E2_1332 at 1568.106 kb on + strand, within Pf6N2E2_1332 at 1568.107 kb on - strand, within Pf6N2E2_1332 at 1568.107 kb on - strand, within Pf6N2E2_1332 at 1568.373 kb on + strand, within Pf6N2E2_1332 at 1568.373 kb on + strand, within Pf6N2E2_1332 at 1568.373 kb on + strand, within Pf6N2E2_1332 at 1568.373 kb on + strand, within Pf6N2E2_1332 at 1568.373 kb on + strand, within Pf6N2E2_1332 at 1568.374 kb on - strand, within Pf6N2E2_1332 at 1568.412 kb on + strand, within Pf6N2E2_1332 at 1568.412 kb on + strand, within Pf6N2E2_1332 at 1568.413 kb on - strand, within Pf6N2E2_1332 at 1568.413 kb on - strand, within Pf6N2E2_1332 at 1568.413 kb on - strand, within Pf6N2E2_1332 at 1568.497 kb on - strand, within Pf6N2E2_1332 at 1568.497 kb on - strand, within Pf6N2E2_1332 at 1568.506 kb on + strand, within Pf6N2E2_1332 at 1568.507 kb on - strand, within Pf6N2E2_1332 at 1568.507 kb on - strand, within Pf6N2E2_1332 at 1568.507 kb on - strand, within Pf6N2E2_1332 at 1568.565 kb on + strand, within Pf6N2E2_1332 at 1568.565 kb on + strand, within Pf6N2E2_1332 at 1568.566 kb on - strand, within Pf6N2E2_1332 at 1568.651 kb on - strand at 1568.651 kb on - strand at 1568.937 kb on + strand, within Pf6N2E2_1333 at 1568.937 kb on + strand, within Pf6N2E2_1333 at 1569.057 kb on + strand, within Pf6N2E2_1333 at 1569.057 kb on + strand, within Pf6N2E2_1333 at 1569.058 kb on - strand, within Pf6N2E2_1333 at 1569.137 kb on + strand, within Pf6N2E2_1333 at 1569.138 kb on - strand, within Pf6N2E2_1333 at 1569.403 kb on + strand, within Pf6N2E2_1333 at 1569.422 kb on + strand, within Pf6N2E2_1333 at 1569.422 kb on + strand, within Pf6N2E2_1333 at 1569.622 kb on - strand, within Pf6N2E2_1333
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.4 mM remove 1,566,808 - Pf6N2E2_1331 0.26 -0.7 1,566,808 - Pf6N2E2_1331 0.26 +1.1 1,567,194 + Pf6N2E2_1331 0.56 +1.7 1,567,195 - Pf6N2E2_1331 0.56 -1.3 1,567,195 - Pf6N2E2_1331 0.56 -0.3 1,567,323 + Pf6N2E2_1331 0.67 +0.7 1,567,324 - Pf6N2E2_1331 0.67 +0.2 1,567,447 - Pf6N2E2_1331 0.77 +1.0 1,567,755 + +1.0 1,567,772 - -0.4 1,567,786 + -1.3 1,567,824 + +0.2 1,567,824 + -0.2 1,567,824 + -0.1 1,567,825 - -0.2 1,567,863 + Pf6N2E2_1332 0.12 -0.6 1,567,863 + Pf6N2E2_1332 0.12 +1.0 1,567,863 + Pf6N2E2_1332 0.12 -0.3 1,567,863 + Pf6N2E2_1332 0.12 -1.6 1,567,864 - Pf6N2E2_1332 0.12 +0.9 1,567,864 - Pf6N2E2_1332 0.12 +0.7 1,567,948 - Pf6N2E2_1332 0.21 +0.7 1,567,950 + Pf6N2E2_1332 0.21 +1.2 1,567,950 + Pf6N2E2_1332 0.21 -1.8 1,567,951 - Pf6N2E2_1332 0.21 +1.0 1,568,031 + Pf6N2E2_1332 0.30 +0.2 1,568,031 + Pf6N2E2_1332 0.30 +1.2 1,568,032 - Pf6N2E2_1332 0.30 +0.7 1,568,106 + Pf6N2E2_1332 0.38 +0.7 1,568,107 - Pf6N2E2_1332 0.38 +0.4 1,568,107 - Pf6N2E2_1332 0.38 -0.1 1,568,373 + Pf6N2E2_1332 0.66 +0.3 1,568,373 + Pf6N2E2_1332 0.66 +0.2 1,568,373 + Pf6N2E2_1332 0.66 +0.9 1,568,373 + Pf6N2E2_1332 0.66 +1.7 1,568,373 + Pf6N2E2_1332 0.66 +0.7 1,568,374 - Pf6N2E2_1332 0.66 +1.5 1,568,412 + Pf6N2E2_1332 0.71 -0.3 1,568,412 + Pf6N2E2_1332 0.71 +0.9 1,568,413 - Pf6N2E2_1332 0.71 +1.5 1,568,413 - Pf6N2E2_1332 0.71 -1.8 1,568,413 - Pf6N2E2_1332 0.71 +0.1 1,568,497 - Pf6N2E2_1332 0.80 -1.3 1,568,497 - Pf6N2E2_1332 0.80 -0.4 1,568,506 + Pf6N2E2_1332 0.81 +0.4 1,568,507 - Pf6N2E2_1332 0.81 +1.1 1,568,507 - Pf6N2E2_1332 0.81 +0.7 1,568,507 - Pf6N2E2_1332 0.81 +0.2 1,568,565 + Pf6N2E2_1332 0.87 +0.9 1,568,565 + Pf6N2E2_1332 0.87 -0.8 1,568,566 - Pf6N2E2_1332 0.87 -0.7 1,568,651 - +0.7 1,568,651 - -0.5 1,568,937 + Pf6N2E2_1333 0.18 +0.3 1,568,937 + Pf6N2E2_1333 0.18 -0.6 1,569,057 + Pf6N2E2_1333 0.30 +2.3 1,569,057 + Pf6N2E2_1333 0.30 +0.4 1,569,058 - Pf6N2E2_1333 0.30 +0.5 1,569,137 + Pf6N2E2_1333 0.38 -0.7 1,569,138 - Pf6N2E2_1333 0.38 +1.1 1,569,403 + Pf6N2E2_1333 0.65 -0.6 1,569,422 + Pf6N2E2_1333 0.67 -0.8 1,569,422 + Pf6N2E2_1333 0.67 +0.0 1,569,622 - Pf6N2E2_1333 0.87 +0.5
Or see this region's nucleotide sequence