Experiment: NoPredeControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS10005 and ABZR87_RS10010 are separated by 52 nucleotides ABZR87_RS10010 and ABZR87_RS10015 are separated by 31 nucleotides ABZR87_RS10015 and ABZR87_RS10020 are separated by 82 nucleotides
ABZR87_RS10005: ABZR87_RS10005 - Fe-S protein assembly chaperone HscA, at 2,124,683 to 2,126,548
_RS10005
ABZR87_RS10010: ABZR87_RS10010 - ISC system 2Fe-2S type ferredoxin, at 2,126,601 to 2,126,939
_RS10010
ABZR87_RS10015: ABZR87_RS10015 - Fe-S cluster assembly protein IscX, at 2,126,971 to 2,127,165
_RS10015
ABZR87_RS10020: ABZR87_RS10020 - glycine zipper 2TM domain-containing protein, at 2,127,248 to 2,127,991
_RS10020
Position (kb)
2126
2127 Strain fitness (log2 ratio)
-1
0
1 at 2126.530 kb on + strand at 2126.583 kb on + strand at 2126.583 kb on + strand at 2127.011 kb on - strand, within ABZR87_RS10015 at 2127.019 kb on + strand, within ABZR87_RS10015 at 2127.019 kb on + strand, within ABZR87_RS10015 at 2127.020 kb on - strand, within ABZR87_RS10015 at 2127.020 kb on - strand, within ABZR87_RS10015 at 2127.164 kb on - strand at 2127.171 kb on + strand at 2127.171 kb on + strand at 2127.171 kb on + strand at 2127.318 kb on + strand at 2127.319 kb on - strand at 2127.337 kb on + strand, within ABZR87_RS10020 at 2127.338 kb on - strand, within ABZR87_RS10020 at 2127.388 kb on - strand, within ABZR87_RS10020 at 2127.388 kb on - strand, within ABZR87_RS10020 at 2127.388 kb on - strand, within ABZR87_RS10020 at 2127.423 kb on - strand, within ABZR87_RS10020 at 2127.448 kb on + strand, within ABZR87_RS10020 at 2127.609 kb on + strand, within ABZR87_RS10020 at 2127.642 kb on + strand, within ABZR87_RS10020 at 2127.642 kb on + strand, within ABZR87_RS10020
Per-strain Table
Position Strand Gene LocusTag Fraction NoPredeControl remove 2,126,530 + -0.5 2,126,583 + -1.2 2,126,583 + -0.6 2,127,011 - ABZR87_RS10015 0.21 +1.3 2,127,019 + ABZR87_RS10015 0.25 +0.0 2,127,019 + ABZR87_RS10015 0.25 +0.4 2,127,020 - ABZR87_RS10015 0.25 +1.4 2,127,020 - ABZR87_RS10015 0.25 +0.8 2,127,164 - -0.2 2,127,171 + +0.3 2,127,171 + +0.3 2,127,171 + -0.9 2,127,318 + -0.3 2,127,319 - -0.0 2,127,337 + ABZR87_RS10020 0.12 -0.4 2,127,338 - ABZR87_RS10020 0.12 -1.1 2,127,388 - ABZR87_RS10020 0.19 +0.4 2,127,388 - ABZR87_RS10020 0.19 +0.5 2,127,388 - ABZR87_RS10020 0.19 +0.3 2,127,423 - ABZR87_RS10020 0.24 -0.3 2,127,448 + ABZR87_RS10020 0.27 +0.1 2,127,609 + ABZR87_RS10020 0.49 -0.2 2,127,642 + ABZR87_RS10020 0.53 +0.3 2,127,642 + ABZR87_RS10020 0.53 -0.1
Or see this region's nucleotide sequence