Experiment: Glucose (C) and nitrate (N); with TAPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS25380 and PFLU_RS25385 are separated by 129 nucleotides PFLU_RS25385 and PFLU_RS25390 are separated by 158 nucleotides PFLU_RS25390 and PFLU_RS25395 are separated by 192 nucleotides
PFLU_RS25380: PFLU_RS25380 - octaprenyl diphosphate synthase, at 5,666,940 to 5,667,908
_RS25380
PFLU_RS25385: PFLU_RS25385 - alkylphosphonate utilization protein, at 5,668,038 to 5,668,379
_RS25385
PFLU_RS25390: PFLU_RS25390 - hypothetical protein, at 5,668,538 to 5,668,795
_RS25390
PFLU_RS25395: PFLU_RS25395 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 5,668,988 to 5,669,605
_RS25395
Position (kb) 5668
5669 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 5667.900 kb on - strand at 5667.900 kb on - strand at 5667.906 kb on + strand at 5667.906 kb on + strand at 5667.906 kb on + strand at 5667.907 kb on - strand at 5667.907 kb on - strand at 5667.911 kb on + strand at 5667.911 kb on + strand at 5667.911 kb on + strand at 5667.911 kb on + strand at 5667.911 kb on + strand at 5667.911 kb on + strand at 5667.912 kb on - strand at 5667.912 kb on - strand at 5667.912 kb on - strand at 5667.912 kb on - strand at 5667.943 kb on + strand at 5667.943 kb on + strand at 5667.943 kb on + strand at 5667.943 kb on + strand at 5667.943 kb on + strand at 5667.944 kb on - strand at 5667.944 kb on - strand at 5667.944 kb on - strand at 5667.944 kb on - strand at 5667.944 kb on - strand at 5667.953 kb on + strand at 5667.953 kb on + strand at 5667.953 kb on + strand at 5667.953 kb on + strand at 5667.953 kb on + strand at 5667.953 kb on + strand at 5667.953 kb on + strand at 5667.953 kb on + strand at 5667.953 kb on + strand at 5667.953 kb on + strand at 5667.953 kb on + strand at 5667.953 kb on + strand at 5667.953 kb on + strand at 5667.954 kb on - strand at 5667.954 kb on - strand at 5667.954 kb on - strand at 5667.954 kb on - strand at 5667.954 kb on - strand at 5667.954 kb on - strand at 5667.954 kb on - strand at 5667.954 kb on - strand at 5667.954 kb on - strand at 5667.954 kb on - strand at 5667.954 kb on - strand at 5667.954 kb on - strand at 5667.954 kb on - strand at 5667.954 kb on - strand at 5667.954 kb on - strand at 5667.954 kb on - strand at 5667.954 kb on - strand at 5667.957 kb on + strand at 5667.957 kb on + strand at 5667.958 kb on - strand at 5667.958 kb on - strand at 5667.958 kb on - strand at 5667.993 kb on - strand at 5667.993 kb on - strand at 5667.994 kb on + strand at 5667.994 kb on + strand at 5667.995 kb on - strand at 5667.995 kb on - strand at 5667.995 kb on - strand at 5667.995 kb on - strand at 5667.995 kb on - strand at 5667.996 kb on + strand at 5667.996 kb on + strand at 5667.996 kb on + strand at 5667.996 kb on + strand at 5667.996 kb on + strand at 5667.996 kb on + strand at 5667.996 kb on + strand at 5667.996 kb on + strand at 5667.996 kb on + strand at 5667.996 kb on + strand at 5667.996 kb on + strand at 5667.996 kb on + strand at 5667.996 kb on + strand at 5667.996 kb on + strand at 5667.996 kb on + strand at 5667.996 kb on + strand at 5667.996 kb on + strand at 5667.996 kb on + strand at 5667.997 kb on - strand at 5667.997 kb on - strand at 5667.997 kb on - strand at 5667.997 kb on - strand at 5667.997 kb on - strand at 5667.997 kb on - strand at 5667.997 kb on - strand at 5667.997 kb on - strand at 5667.997 kb on - strand at 5667.997 kb on - strand at 5667.997 kb on - strand at 5667.997 kb on - strand at 5667.997 kb on - strand at 5667.997 kb on - strand at 5667.997 kb on - strand at 5667.997 kb on - strand at 5667.997 kb on - strand at 5667.997 kb on - strand at 5667.997 kb on - strand at 5667.997 kb on - strand at 5668.011 kb on - strand at 5668.011 kb on - strand at 5668.036 kb on + strand at 5668.036 kb on + strand at 5668.036 kb on + strand at 5668.036 kb on + strand at 5668.036 kb on + strand at 5668.037 kb on - strand at 5668.077 kb on + strand, within PFLU_RS25385 at 5668.077 kb on + strand, within PFLU_RS25385 at 5668.077 kb on + strand, within PFLU_RS25385 at 5668.078 kb on - strand, within PFLU_RS25385 at 5668.078 kb on - strand, within PFLU_RS25385 at 5668.078 kb on - strand, within PFLU_RS25385 at 5668.078 kb on - strand, within PFLU_RS25385 at 5668.078 kb on - strand, within PFLU_RS25385 at 5668.083 kb on + strand, within PFLU_RS25385 at 5668.083 kb on + strand, within PFLU_RS25385 at 5668.083 kb on + strand, within PFLU_RS25385 at 5668.083 kb on + strand, within PFLU_RS25385 at 5668.083 kb on + strand, within PFLU_RS25385 at 5668.083 kb on + strand, within PFLU_RS25385 at 5668.083 kb on + strand, within PFLU_RS25385 at 5668.083 kb on + strand, within PFLU_RS25385 at 5668.083 kb on + strand, within PFLU_RS25385 at 5668.083 kb on + strand, within PFLU_RS25385 at 5668.083 kb on + strand, within PFLU_RS25385 at 5668.083 kb on + strand, within PFLU_RS25385 at 5668.083 kb on + strand, within PFLU_RS25385 at 5668.084 kb on - strand, within PFLU_RS25385 at 5668.084 kb on - strand, within PFLU_RS25385 at 5668.084 kb on - strand, within PFLU_RS25385 at 5668.084 kb on - strand, within PFLU_RS25385 at 5668.084 kb on - strand, within PFLU_RS25385 at 5668.084 kb on - strand, within PFLU_RS25385 at 5668.084 kb on - strand, within PFLU_RS25385 at 5668.084 kb on - strand, within PFLU_RS25385 at 5668.084 kb on - strand, within PFLU_RS25385 at 5668.084 kb on - strand, within PFLU_RS25385 at 5668.084 kb on - strand, within PFLU_RS25385 at 5668.084 kb on - strand, within PFLU_RS25385 at 5668.084 kb on - strand, within PFLU_RS25385 at 5668.084 kb on - strand, within PFLU_RS25385 at 5668.084 kb on - strand, within PFLU_RS25385 at 5668.370 kb on + strand at 5668.371 kb on - strand at 5668.478 kb on - strand at 5668.488 kb on + strand at 5668.489 kb on - strand at 5668.493 kb on + strand at 5668.493 kb on + strand at 5668.493 kb on + strand at 5668.544 kb on + strand at 5668.544 kb on + strand at 5668.544 kb on + strand at 5668.544 kb on + strand at 5668.544 kb on + strand at 5668.544 kb on + strand at 5668.544 kb on + strand at 5668.544 kb on + strand at 5668.544 kb on + strand at 5668.545 kb on - strand at 5668.545 kb on - strand at 5668.545 kb on - strand at 5668.545 kb on - strand at 5668.545 kb on - strand at 5668.545 kb on - strand at 5668.545 kb on - strand at 5668.545 kb on - strand at 5668.545 kb on - strand at 5668.551 kb on + strand at 5668.551 kb on + strand at 5668.551 kb on + strand at 5668.551 kb on + strand at 5668.551 kb on + strand at 5668.551 kb on + strand at 5668.552 kb on - strand at 5668.552 kb on - strand at 5668.552 kb on - strand at 5668.552 kb on - strand at 5668.552 kb on - strand at 5668.552 kb on - strand at 5668.552 kb on - strand at 5668.580 kb on + strand, within PFLU_RS25390 at 5668.580 kb on + strand, within PFLU_RS25390 at 5668.580 kb on + strand, within PFLU_RS25390 at 5668.580 kb on + strand, within PFLU_RS25390 at 5668.581 kb on - strand, within PFLU_RS25390 at 5668.581 kb on - strand, within PFLU_RS25390 at 5668.581 kb on - strand, within PFLU_RS25390 at 5668.723 kb on + strand, within PFLU_RS25390 at 5668.723 kb on + strand, within PFLU_RS25390 at 5668.723 kb on + strand, within PFLU_RS25390 at 5668.723 kb on + strand, within PFLU_RS25390 at 5668.724 kb on - strand, within PFLU_RS25390 at 5668.724 kb on - strand, within PFLU_RS25390 at 5668.724 kb on - strand, within PFLU_RS25390 at 5668.742 kb on + strand, within PFLU_RS25390 at 5668.742 kb on + strand, within PFLU_RS25390 at 5668.742 kb on + strand, within PFLU_RS25390 at 5668.743 kb on - strand, within PFLU_RS25390 at 5668.743 kb on - strand, within PFLU_RS25390 at 5668.743 kb on - strand, within PFLU_RS25390 at 5668.818 kb on + strand at 5668.818 kb on + strand at 5668.819 kb on - strand at 5668.827 kb on + strand at 5668.827 kb on + strand at 5668.827 kb on + strand at 5668.827 kb on + strand at 5668.827 kb on + strand at 5668.827 kb on + strand at 5668.827 kb on + strand at 5668.827 kb on + strand at 5668.827 kb on + strand at 5668.827 kb on + strand at 5668.827 kb on + strand at 5668.827 kb on + strand at 5668.827 kb on + strand at 5668.827 kb on + strand at 5668.827 kb on + strand at 5668.827 kb on + strand at 5668.828 kb on - strand at 5668.828 kb on - strand at 5668.828 kb on - strand at 5668.828 kb on - strand at 5668.828 kb on - strand at 5668.828 kb on - strand at 5668.828 kb on - strand at 5668.828 kb on - strand at 5668.828 kb on - strand at 5668.828 kb on - strand at 5668.828 kb on - strand at 5668.828 kb on - strand at 5668.828 kb on - strand at 5668.828 kb on - strand at 5668.889 kb on - strand at 5668.889 kb on - strand at 5668.889 kb on - strand at 5668.889 kb on - strand at 5668.889 kb on - strand at 5668.889 kb on - strand at 5668.989 kb on + strand at 5668.989 kb on + strand at 5668.989 kb on + strand at 5668.990 kb on - strand at 5668.990 kb on - strand at 5668.990 kb on - strand at 5668.990 kb on - strand at 5669.064 kb on + strand, within PFLU_RS25395 at 5669.085 kb on + strand, within PFLU_RS25395 at 5669.085 kb on + strand, within PFLU_RS25395 at 5669.085 kb on + strand, within PFLU_RS25395 at 5669.085 kb on + strand, within PFLU_RS25395 at 5669.085 kb on + strand, within PFLU_RS25395 at 5669.086 kb on - strand, within PFLU_RS25395 at 5669.086 kb on - strand, within PFLU_RS25395 at 5669.086 kb on - strand, within PFLU_RS25395 at 5669.086 kb on - strand, within PFLU_RS25395 at 5669.086 kb on - strand, within PFLU_RS25395 at 5669.086 kb on - strand, within PFLU_RS25395 at 5669.184 kb on + strand, within PFLU_RS25395 at 5669.185 kb on - strand, within PFLU_RS25395 at 5669.226 kb on + strand, within PFLU_RS25395 at 5669.226 kb on + strand, within PFLU_RS25395 at 5669.233 kb on + strand, within PFLU_RS25395 at 5669.234 kb on - strand, within PFLU_RS25395 at 5669.234 kb on - strand, within PFLU_RS25395
Per-strain Table
Position Strand Gene LocusTag Fraction Glucose (C) and nitrate (N); with TAPS remove 5,667,900 - -1.0 5,667,900 - +1.3 5,667,906 + -0.3 5,667,906 + +0.2 5,667,906 + -1.4 5,667,907 - -1.8 5,667,907 - +0.5 5,667,911 + -1.0 5,667,911 + -1.3 5,667,911 + -0.1 5,667,911 + +0.0 5,667,911 + -0.2 5,667,911 + -1.0 5,667,912 - +0.0 5,667,912 - +0.4 5,667,912 - -1.7 5,667,912 - +2.3 5,667,943 + -0.3 5,667,943 + +0.2 5,667,943 + -1.4 5,667,943 + +1.2 5,667,943 + -0.8 5,667,944 - -0.6 5,667,944 - +0.7 5,667,944 - +1.3 5,667,944 - +0.2 5,667,944 - -1.6 5,667,953 + -0.6 5,667,953 + -0.5 5,667,953 + +0.1 5,667,953 + +1.5 5,667,953 + -0.3 5,667,953 + +0.1 5,667,953 + -1.5 5,667,953 + -1.0 5,667,953 + -0.1 5,667,953 + -0.2 5,667,953 + -2.0 5,667,953 + -1.1 5,667,953 + -0.5 5,667,954 - -1.0 5,667,954 - -0.3 5,667,954 - -1.8 5,667,954 - +0.0 5,667,954 - +0.4 5,667,954 - -0.2 5,667,954 - +0.0 5,667,954 - -0.8 5,667,954 - -0.3 5,667,954 - -0.9 5,667,954 - -0.0 5,667,954 - -1.7 5,667,954 - +0.4 5,667,954 - -2.3 5,667,954 - +1.7 5,667,954 - -0.3 5,667,954 - +0.2 5,667,957 + -0.8 5,667,957 + -0.0 5,667,958 - -2.3 5,667,958 - +0.2 5,667,958 - +1.7 5,667,993 - -2.7 5,667,993 - +0.7 5,667,994 + -2.1 5,667,994 + -0.6 5,667,995 - -0.2 5,667,995 - +0.8 5,667,995 - +1.3 5,667,995 - -0.7 5,667,995 - +2.7 5,667,996 + +0.8 5,667,996 + +3.3 5,667,996 + -0.3 5,667,996 + +0.7 5,667,996 + -1.3 5,667,996 + -0.8 5,667,996 + -0.8 5,667,996 + +2.5 5,667,996 + +0.1 5,667,996 + -2.6 5,667,996 + -1.1 5,667,996 + -0.1 5,667,996 + +0.7 5,667,996 + +0.7 5,667,996 + -2.0 5,667,996 + +0.3 5,667,996 + +0.5 5,667,996 + +0.7 5,667,997 - -0.7 5,667,997 - -0.4 5,667,997 - -0.3 5,667,997 - -1.3 5,667,997 - -0.7 5,667,997 - -0.6 5,667,997 - -0.4 5,667,997 - +0.2 5,667,997 - -1.1 5,667,997 - +1.6 5,667,997 - -0.5 5,667,997 - -0.8 5,667,997 - -0.5 5,667,997 - -0.8 5,667,997 - +1.0 5,667,997 - -0.2 5,667,997 - -0.5 5,667,997 - +0.2 5,667,997 - -0.5 5,667,997 - -1.1 5,668,011 - +0.3 5,668,011 - -0.1 5,668,036 + +0.1 5,668,036 + -0.6 5,668,036 + +2.3 5,668,036 + +0.3 5,668,036 + -0.1 5,668,037 - -0.2 5,668,077 + PFLU_RS25385 0.11 +0.2 5,668,077 + PFLU_RS25385 0.11 +0.3 5,668,077 + PFLU_RS25385 0.11 +0.7 5,668,078 - PFLU_RS25385 0.12 -1.7 5,668,078 - PFLU_RS25385 0.12 -0.6 5,668,078 - PFLU_RS25385 0.12 -1.2 5,668,078 - PFLU_RS25385 0.12 -0.2 5,668,078 - PFLU_RS25385 0.12 +1.0 5,668,083 + PFLU_RS25385 0.13 -0.5 5,668,083 + PFLU_RS25385 0.13 -1.3 5,668,083 + PFLU_RS25385 0.13 -0.4 5,668,083 + PFLU_RS25385 0.13 +0.1 5,668,083 + PFLU_RS25385 0.13 -0.5 5,668,083 + PFLU_RS25385 0.13 +1.9 5,668,083 + PFLU_RS25385 0.13 -0.3 5,668,083 + PFLU_RS25385 0.13 +0.1 5,668,083 + PFLU_RS25385 0.13 +0.2 5,668,083 + PFLU_RS25385 0.13 -1.5 5,668,083 + PFLU_RS25385 0.13 +1.1 5,668,083 + PFLU_RS25385 0.13 +1.5 5,668,083 + PFLU_RS25385 0.13 -0.6 5,668,084 - PFLU_RS25385 0.13 -0.4 5,668,084 - PFLU_RS25385 0.13 -0.2 5,668,084 - PFLU_RS25385 0.13 +0.6 5,668,084 - PFLU_RS25385 0.13 -1.7 5,668,084 - PFLU_RS25385 0.13 -0.3 5,668,084 - PFLU_RS25385 0.13 +1.8 5,668,084 - PFLU_RS25385 0.13 +1.3 5,668,084 - PFLU_RS25385 0.13 -1.3 5,668,084 - PFLU_RS25385 0.13 -0.5 5,668,084 - PFLU_RS25385 0.13 -1.4 5,668,084 - PFLU_RS25385 0.13 +0.8 5,668,084 - PFLU_RS25385 0.13 -0.0 5,668,084 - PFLU_RS25385 0.13 -1.3 5,668,084 - PFLU_RS25385 0.13 -1.5 5,668,084 - PFLU_RS25385 0.13 +1.1 5,668,370 + +0.3 5,668,371 - +0.3 5,668,478 - +0.9 5,668,488 + +1.4 5,668,489 - -1.0 5,668,493 + +1.3 5,668,493 + -0.3 5,668,493 + -1.1 5,668,544 + +0.4 5,668,544 + +0.6 5,668,544 + +0.1 5,668,544 + +1.1 5,668,544 + +0.6 5,668,544 + -1.6 5,668,544 + -0.1 5,668,544 + -0.4 5,668,544 + +0.0 5,668,545 - +0.0 5,668,545 - +0.7 5,668,545 - +1.9 5,668,545 - +2.3 5,668,545 - -0.7 5,668,545 - +4.9 5,668,545 - +0.5 5,668,545 - -1.1 5,668,545 - -0.8 5,668,551 + -1.2 5,668,551 + -1.6 5,668,551 + +1.7 5,668,551 + -0.8 5,668,551 + +0.6 5,668,551 + +0.8 5,668,552 - -0.4 5,668,552 - +1.1 5,668,552 - -0.6 5,668,552 - -0.0 5,668,552 - -0.2 5,668,552 - +0.8 5,668,552 - +1.2 5,668,580 + PFLU_RS25390 0.16 +0.2 5,668,580 + PFLU_RS25390 0.16 -0.4 5,668,580 + PFLU_RS25390 0.16 +0.4 5,668,580 + PFLU_RS25390 0.16 +0.3 5,668,581 - PFLU_RS25390 0.17 +0.3 5,668,581 - PFLU_RS25390 0.17 +0.6 5,668,581 - PFLU_RS25390 0.17 +0.0 5,668,723 + PFLU_RS25390 0.72 -0.8 5,668,723 + PFLU_RS25390 0.72 +0.0 5,668,723 + PFLU_RS25390 0.72 -0.4 5,668,723 + PFLU_RS25390 0.72 +0.6 5,668,724 - PFLU_RS25390 0.72 -0.7 5,668,724 - PFLU_RS25390 0.72 +1.8 5,668,724 - PFLU_RS25390 0.72 -1.3 5,668,742 + PFLU_RS25390 0.79 -2.0 5,668,742 + PFLU_RS25390 0.79 +0.8 5,668,742 + PFLU_RS25390 0.79 -0.2 5,668,743 - PFLU_RS25390 0.79 -0.8 5,668,743 - PFLU_RS25390 0.79 +0.0 5,668,743 - PFLU_RS25390 0.79 +0.8 5,668,818 + +0.7 5,668,818 + -1.9 5,668,819 - +0.6 5,668,827 + -1.5 5,668,827 + +1.0 5,668,827 + -0.5 5,668,827 + -1.1 5,668,827 + +1.3 5,668,827 + -1.7 5,668,827 + -1.6 5,668,827 + -2.4 5,668,827 + +1.6 5,668,827 + -1.2 5,668,827 + +0.2 5,668,827 + -0.0 5,668,827 + -1.1 5,668,827 + +1.8 5,668,827 + +0.3 5,668,827 + +1.3 5,668,828 - -0.2 5,668,828 - +0.0 5,668,828 - +0.6 5,668,828 - +1.6 5,668,828 - +1.9 5,668,828 - +0.4 5,668,828 - -0.2 5,668,828 - -0.2 5,668,828 - +1.5 5,668,828 - +1.3 5,668,828 - +1.6 5,668,828 - +0.6 5,668,828 - +1.6 5,668,828 - -0.2 5,668,889 - +1.6 5,668,889 - +1.6 5,668,889 - +1.4 5,668,889 - -1.6 5,668,889 - +0.0 5,668,889 - +0.4 5,668,989 + -1.7 5,668,989 + +1.2 5,668,989 + +0.7 5,668,990 - -1.7 5,668,990 - -0.7 5,668,990 - +1.6 5,668,990 - +0.0 5,669,064 + PFLU_RS25395 0.12 +0.6 5,669,085 + PFLU_RS25395 0.16 +0.1 5,669,085 + PFLU_RS25395 0.16 -0.6 5,669,085 + PFLU_RS25395 0.16 -1.3 5,669,085 + PFLU_RS25395 0.16 -0.4 5,669,085 + PFLU_RS25395 0.16 -1.7 5,669,086 - PFLU_RS25395 0.16 -1.0 5,669,086 - PFLU_RS25395 0.16 -0.1 5,669,086 - PFLU_RS25395 0.16 -0.5 5,669,086 - PFLU_RS25395 0.16 -0.8 5,669,086 - PFLU_RS25395 0.16 -0.0 5,669,086 - PFLU_RS25395 0.16 -1.2 5,669,184 + PFLU_RS25395 0.32 +0.2 5,669,185 - PFLU_RS25395 0.32 -0.9 5,669,226 + PFLU_RS25395 0.39 +0.7 5,669,226 + PFLU_RS25395 0.39 -1.4 5,669,233 + PFLU_RS25395 0.40 -0.2 5,669,234 - PFLU_RS25395 0.40 -0.2 5,669,234 - PFLU_RS25395 0.40 -0.2
Or see this region's nucleotide sequence