Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14500

Experiment: Glucose (C) and nitrate (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glucose (C) and nitrate (N); with TAPS
3,245,182	+		PFLU_RS14495	0.14	+3.3
3,245,183	-		PFLU_RS14495	0.14	-0.1
3,245,183	-		PFLU_RS14495	0.14	-0.7
3,245,184	+		PFLU_RS14495	0.14	-0.7
3,245,184	+		PFLU_RS14495	0.14	+0.4
3,245,299	+		PFLU_RS14495	0.27	-0.4
3,245,360	+		PFLU_RS14495	0.34	-0.7
3,245,360	+		PFLU_RS14495	0.34	-0.1
3,245,360	+		PFLU_RS14495	0.34	-0.7
3,245,361	-		PFLU_RS14495	0.34	+0.3
3,245,361	-		PFLU_RS14495	0.34	-0.8
3,245,361	-		PFLU_RS14495	0.34	-0.1
3,245,361	-		PFLU_RS14495	0.34	+1.3
3,245,361	-		PFLU_RS14495	0.34	-0.4
3,245,361	-		PFLU_RS14495	0.34	+2.3
3,245,373	+		PFLU_RS14495	0.35	+1.3
3,245,373	+		PFLU_RS14495	0.35	+1.6
3,245,373	+		PFLU_RS14495	0.35	-2.0
3,245,373	+		PFLU_RS14495	0.35	+0.3
3,245,373	+		PFLU_RS14495	0.35	+1.7
3,245,373	+		PFLU_RS14495	0.35	-1.0
3,245,374	-		PFLU_RS14495	0.35	-0.6
3,245,374	-		PFLU_RS14495	0.35	+1.0
3,245,374	-		PFLU_RS14495	0.35	+2.3
3,245,374	-		PFLU_RS14495	0.35	+0.7
3,245,374	-		PFLU_RS14495	0.35	+0.2
3,245,374	-		PFLU_RS14495	0.35	-0.6
3,245,374	-		PFLU_RS14495	0.35	-0.3
3,245,419	-		PFLU_RS14495	0.41	-1.7
3,245,419	-		PFLU_RS14495	0.41	+0.3
3,245,496	+		PFLU_RS14495	0.49	+0.3
3,245,496	+		PFLU_RS14495	0.49	-0.1
3,245,496	+		PFLU_RS14495	0.49	+1.0
3,245,496	+		PFLU_RS14495	0.49	+1.6
3,245,497	-		PFLU_RS14495	0.49	-1.5
3,245,497	-		PFLU_RS14495	0.49	-0.8
3,245,500	+		PFLU_RS14495	0.50	+0.1
3,245,500	+		PFLU_RS14495	0.50	-1.9
3,245,500	+		PFLU_RS14495	0.50	+1.3
3,245,538	+		PFLU_RS14495	0.54	-0.9
3,245,631	+		PFLU_RS14495	0.65	+0.3
3,245,631	+		PFLU_RS14495	0.65	+0.5
3,245,631	+		PFLU_RS14495	0.65	-0.1
3,245,631	+		PFLU_RS14495	0.65	-0.0
3,245,631	+		PFLU_RS14495	0.65	-0.8
3,245,631	+		PFLU_RS14495	0.65	+0.5
3,245,632	-		PFLU_RS14495	0.65	-1.3
3,245,632	-		PFLU_RS14495	0.65	+0.1
3,245,632	-		PFLU_RS14495	0.65	-0.0
3,245,632	-		PFLU_RS14495	0.65	-0.3
3,245,632	-		PFLU_RS14495	0.65	+0.1
3,245,632	-		PFLU_RS14495	0.65	+0.3
3,245,703	+		PFLU_RS14495	0.73	-0.6
3,245,704	-		PFLU_RS14495	0.73	+2.0
3,245,704	-		PFLU_RS14495	0.73	-2.6
3,245,709	+		PFLU_RS14495	0.73	-0.1
3,245,709	+		PFLU_RS14495	0.73	-1.3
3,245,709	+		PFLU_RS14495	0.73	-2.1
3,245,709	+		PFLU_RS14495	0.73	-0.9
3,245,709	+		PFLU_RS14495	0.73	-1.3
3,245,710	-		PFLU_RS14495	0.74	+1.5
3,245,710	-		PFLU_RS14495	0.74	+0.3
3,245,710	-		PFLU_RS14495	0.74	-0.0
3,245,787	-		PFLU_RS14495	0.82	-1.1
3,245,809	+		PFLU_RS14495	0.85	+1.1
3,245,809	+		PFLU_RS14495	0.85	-2.3
3,245,809	+		PFLU_RS14495	0.85	-0.7
3,245,809	+		PFLU_RS14495	0.85	-1.0
3,245,809	+		PFLU_RS14495	0.85	-1.3
3,245,809	+		PFLU_RS14495	0.85	-0.7
3,245,809	+		PFLU_RS14495	0.85	+0.7
3,245,809	+		PFLU_RS14495	0.85	-1.0
3,245,810	-		PFLU_RS14495	0.85	+0.5
3,245,810	-		PFLU_RS14495	0.85	-0.3
3,245,810	-		PFLU_RS14495	0.85	-0.9
3,245,810	-		PFLU_RS14495	0.85	-0.0
3,245,810	-		PFLU_RS14495	0.85	+0.2
3,245,810	-		PFLU_RS14495	0.85	-1.8
3,245,877	+				+2.6
3,245,877	+				+0.3
3,245,878	-				-0.7
3,245,878	-				+0.4
3,245,878	-				-0.6
3,245,888	+				-0.7
3,245,888	+				+1.9
3,245,889	-				+0.1
3,245,951	-				-2.3
3,245,951	-				-0.7
3,245,955	+				-0.5
3,245,956	-				-0.9
3,246,061	+				-0.1
3,246,078	-				+0.2
3,246,128	+				+0.3
3,246,129	-				+0.3
3,246,142	+				+0.3
3,246,142	+				+0.3
3,246,142	+				+0.3
3,246,142	+				+0.9
3,246,142	+				-0.8
3,246,142	+				+0.7
3,246,142	+				-1.0
3,246,142	+				-2.0
3,246,142	+				+0.7
3,246,142	+				+0.9
3,246,143	-				+1.3
3,246,143	-				+0.3
3,246,143	-				-1.3
3,246,143	-				+2.3
3,246,143	-				+1.9
3,246,143	-				-0.4
3,246,143	-				+0.3
3,246,180	+		PFLU_RS14500	0.11	-1.1
3,246,180	+		PFLU_RS14500	0.11	-2.1
3,246,305	+		PFLU_RS14500	0.33	-0.8
3,246,595	+		PFLU_RS14500	0.83	-0.6
3,246,595	+		PFLU_RS14500	0.83	-0.1
3,246,596	-		PFLU_RS14500	0.83	+2.9
3,246,596	-		PFLU_RS14500	0.83	+1.3
3,246,596	-		PFLU_RS14500	0.83	-1.0
3,246,596	-		PFLU_RS14500	0.83	-1.5
3,246,603	+		PFLU_RS14500	0.84	+0.1
3,246,604	-		PFLU_RS14500	0.84	-1.5
3,246,615	+		PFLU_RS14500	0.86	-1.0
3,246,615	+		PFLU_RS14500	0.86	-0.3
3,246,615	+		PFLU_RS14500	0.86	-2.0
3,246,615	+		PFLU_RS14500	0.86	+1.3
3,246,616	-		PFLU_RS14500	0.87	-0.7
3,246,616	-		PFLU_RS14500	0.87	-0.7
3,246,616	-		PFLU_RS14500	0.87	-1.7
3,246,657	+				-2.0
3,246,657	+				-1.1
3,246,657	+				+0.5
3,246,657	+				+0.7
3,246,691	+				+0.4
3,246,691	+				-0.4
3,246,764	+				-2.0
3,246,765	-				+0.5
3,246,771	+				-0.7
3,246,771	+				-1.0
3,246,771	+				-0.3
3,246,771	+				+1.1
3,246,771	+				+1.9
3,246,771	+				-1.1
3,246,772	-				+0.7
3,246,772	-				+0.3
3,246,772	-				-0.8
3,246,772	-				-1.0
3,246,772	-				-1.5
3,246,774	+				+0.3
3,246,775	-				-0.7
3,246,877	+		PFLU_RS14505	0.18	+0.3
3,246,877	+		PFLU_RS14505	0.18	+0.3
3,246,877	+		PFLU_RS14505	0.18	-0.9
3,246,878	-		PFLU_RS14505	0.18	+1.1
3,247,207	+		PFLU_RS14505	0.49	-1.3
3,247,207	+		PFLU_RS14505	0.49	-0.8
3,247,207	+		PFLU_RS14505	0.49	+0.2
3,247,208	-		PFLU_RS14505	0.49	+0.2
3,247,208	-		PFLU_RS14505	0.49	+0.9
3,247,208	-		PFLU_RS14505	0.49	-0.1
3,247,208	-		PFLU_RS14505	0.49	-1.3
3,247,282	+		PFLU_RS14505	0.57	+2.9
3,247,282	+		PFLU_RS14505	0.57	+0.6
3,247,283	-		PFLU_RS14505	0.57	-1.1
3,247,283	-		PFLU_RS14505	0.57	+1.3
3,247,283	-		PFLU_RS14505	0.57	-0.7
3,247,326	+		PFLU_RS14505	0.61	+0.9
3,247,326	+		PFLU_RS14505	0.61	+1.9
3,247,327	-		PFLU_RS14505	0.61	+0.9
3,247,327	-		PFLU_RS14505	0.61	+0.1
3,247,327	-		PFLU_RS14505	0.61	+0.0
3,247,327	-		PFLU_RS14505	0.61	-0.8
3,247,355	-		PFLU_RS14505	0.64	-1.0
3,247,355	-		PFLU_RS14505	0.64	+1.7
3,247,469	+		PFLU_RS14505	0.74	+0.6
3,247,639	+				-0.3
3,247,639	+				-0.8
3,247,640	-				-1.0
3,247,663	+				-1.2