Experiment: Glucose (C) and nitrate (N); with TAPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS08855 and PFLU_RS08860 are separated by 58 nucleotides PFLU_RS08860 and PFLU_RS08865 are separated by 145 nucleotides PFLU_RS08865 and PFLU_RS08870 are separated by 10 nucleotides
PFLU_RS08855: PFLU_RS08855 - glycerate kinase, at 1,962,875 to 1,964,155
_RS08855
PFLU_RS08860: PFLU_RS08860 - 2-hydroxy-3-oxopropionate reductase, at 1,964,214 to 1,965,104
_RS08860
PFLU_RS08865: PFLU_RS08865 - hydroxypyruvate isomerase, at 1,965,250 to 1,966,032
_RS08865
PFLU_RS08870: PFLU_RS08870 - glyoxylate carboligase, at 1,966,043 to 1,967,818
_RS08870
Position (kb) 1964
1965
1966 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1963.509 kb on + strand, within PFLU_RS08855 at 1963.614 kb on + strand, within PFLU_RS08855 at 1963.614 kb on + strand, within PFLU_RS08855 at 1963.614 kb on + strand, within PFLU_RS08855 at 1963.614 kb on + strand, within PFLU_RS08855 at 1963.614 kb on + strand, within PFLU_RS08855 at 1963.614 kb on + strand, within PFLU_RS08855 at 1963.614 kb on + strand, within PFLU_RS08855 at 1963.614 kb on + strand, within PFLU_RS08855 at 1963.614 kb on + strand, within PFLU_RS08855 at 1963.615 kb on - strand, within PFLU_RS08855 at 1963.615 kb on - strand, within PFLU_RS08855 at 1963.615 kb on - strand, within PFLU_RS08855 at 1963.615 kb on - strand, within PFLU_RS08855 at 1963.615 kb on - strand, within PFLU_RS08855 at 1963.615 kb on - strand, within PFLU_RS08855 at 1963.620 kb on + strand, within PFLU_RS08855 at 1963.620 kb on + strand, within PFLU_RS08855 at 1963.620 kb on + strand, within PFLU_RS08855 at 1963.620 kb on + strand, within PFLU_RS08855 at 1963.620 kb on + strand, within PFLU_RS08855 at 1963.620 kb on + strand, within PFLU_RS08855 at 1963.620 kb on + strand, within PFLU_RS08855 at 1963.620 kb on + strand, within PFLU_RS08855 at 1963.620 kb on + strand, within PFLU_RS08855 at 1963.620 kb on + strand, within PFLU_RS08855 at 1963.620 kb on + strand, within PFLU_RS08855 at 1963.620 kb on + strand, within PFLU_RS08855 at 1963.621 kb on - strand, within PFLU_RS08855 at 1963.621 kb on - strand, within PFLU_RS08855 at 1963.621 kb on - strand, within PFLU_RS08855 at 1963.621 kb on - strand, within PFLU_RS08855 at 1963.621 kb on - strand, within PFLU_RS08855 at 1963.621 kb on - strand, within PFLU_RS08855 at 1963.621 kb on - strand, within PFLU_RS08855 at 1963.621 kb on - strand, within PFLU_RS08855 at 1963.621 kb on - strand, within PFLU_RS08855 at 1964.070 kb on + strand at 1964.071 kb on - strand at 1964.155 kb on + strand at 1964.156 kb on - strand at 1964.156 kb on - strand at 1964.156 kb on - strand at 1964.181 kb on + strand at 1964.182 kb on - strand at 1964.182 kb on - strand at 1964.184 kb on + strand at 1964.184 kb on + strand at 1964.184 kb on + strand at 1964.185 kb on - strand at 1964.185 kb on - strand at 1964.185 kb on - strand at 1964.185 kb on - strand at 1964.185 kb on - strand at 1964.185 kb on - strand at 1964.215 kb on + strand at 1964.215 kb on + strand at 1964.215 kb on + strand at 1964.215 kb on + strand at 1964.215 kb on + strand at 1964.216 kb on - strand at 1964.216 kb on - strand at 1964.216 kb on - strand at 1964.216 kb on - strand at 1964.219 kb on + strand at 1964.220 kb on - strand at 1964.220 kb on - strand at 1964.243 kb on + strand at 1964.243 kb on + strand at 1964.243 kb on + strand at 1964.243 kb on + strand at 1964.244 kb on - strand at 1964.244 kb on - strand at 1964.405 kb on + strand, within PFLU_RS08860 at 1964.406 kb on - strand, within PFLU_RS08860 at 1964.758 kb on + strand, within PFLU_RS08860 at 1964.758 kb on + strand, within PFLU_RS08860 at 1964.758 kb on + strand, within PFLU_RS08860 at 1965.002 kb on + strand, within PFLU_RS08860 at 1965.099 kb on - strand at 1965.122 kb on + strand at 1965.122 kb on + strand at 1965.122 kb on + strand at 1965.123 kb on - strand at 1965.123 kb on - strand at 1965.123 kb on - strand at 1965.123 kb on - strand at 1965.123 kb on - strand at 1965.123 kb on - strand at 1965.123 kb on - strand at 1965.125 kb on + strand at 1965.125 kb on + strand at 1965.125 kb on + strand at 1965.125 kb on + strand at 1965.126 kb on - strand at 1965.126 kb on - strand at 1965.126 kb on - strand at 1965.126 kb on - strand at 1965.126 kb on - strand at 1965.126 kb on - strand at 1965.179 kb on + strand at 1965.187 kb on + strand at 1965.187 kb on + strand at 1965.187 kb on + strand at 1965.188 kb on - strand at 1965.188 kb on - strand at 1965.251 kb on + strand at 1965.251 kb on + strand at 1965.251 kb on + strand at 1965.251 kb on + strand at 1965.251 kb on + strand at 1965.252 kb on - strand at 1965.252 kb on - strand at 1965.252 kb on - strand at 1965.262 kb on - strand at 1965.311 kb on + strand at 1965.311 kb on + strand at 1965.312 kb on - strand at 1965.312 kb on - strand at 1965.312 kb on - strand at 1965.371 kb on + strand, within PFLU_RS08865 at 1965.371 kb on + strand, within PFLU_RS08865 at 1965.371 kb on + strand, within PFLU_RS08865 at 1965.372 kb on - strand, within PFLU_RS08865 at 1965.494 kb on + strand, within PFLU_RS08865 at 1965.494 kb on + strand, within PFLU_RS08865 at 1965.494 kb on + strand, within PFLU_RS08865 at 1965.494 kb on + strand, within PFLU_RS08865 at 1965.494 kb on + strand, within PFLU_RS08865 at 1965.494 kb on + strand, within PFLU_RS08865 at 1965.494 kb on + strand, within PFLU_RS08865 at 1965.494 kb on + strand, within PFLU_RS08865 at 1965.494 kb on + strand, within PFLU_RS08865 at 1965.494 kb on + strand, within PFLU_RS08865 at 1965.494 kb on + strand, within PFLU_RS08865 at 1965.494 kb on + strand, within PFLU_RS08865 at 1965.494 kb on + strand, within PFLU_RS08865 at 1965.494 kb on + strand, within PFLU_RS08865 at 1965.494 kb on + strand, within PFLU_RS08865 at 1965.494 kb on + strand, within PFLU_RS08865 at 1965.494 kb on + strand, within PFLU_RS08865 at 1965.494 kb on + strand, within PFLU_RS08865 at 1965.494 kb on + strand, within PFLU_RS08865 at 1965.494 kb on + strand, within PFLU_RS08865 at 1965.494 kb on + strand, within PFLU_RS08865 at 1965.494 kb on + strand, within PFLU_RS08865 at 1965.494 kb on + strand, within PFLU_RS08865 at 1965.494 kb on + strand, within PFLU_RS08865 at 1965.495 kb on - strand, within PFLU_RS08865 at 1965.495 kb on - strand, within PFLU_RS08865 at 1965.495 kb on - strand, within PFLU_RS08865 at 1965.495 kb on - strand, within PFLU_RS08865 at 1965.495 kb on - strand, within PFLU_RS08865 at 1965.495 kb on - strand, within PFLU_RS08865 at 1965.495 kb on - strand, within PFLU_RS08865 at 1965.495 kb on - strand, within PFLU_RS08865 at 1965.495 kb on - strand, within PFLU_RS08865 at 1965.495 kb on - strand, within PFLU_RS08865 at 1965.495 kb on - strand, within PFLU_RS08865 at 1965.503 kb on + strand, within PFLU_RS08865 at 1965.504 kb on - strand, within PFLU_RS08865 at 1965.504 kb on - strand, within PFLU_RS08865 at 1965.504 kb on - strand, within PFLU_RS08865 at 1965.572 kb on + strand, within PFLU_RS08865 at 1965.572 kb on + strand, within PFLU_RS08865 at 1965.573 kb on - strand, within PFLU_RS08865 at 1965.573 kb on - strand, within PFLU_RS08865 at 1965.573 kb on - strand, within PFLU_RS08865 at 1965.573 kb on - strand, within PFLU_RS08865 at 1965.573 kb on - strand, within PFLU_RS08865 at 1965.650 kb on + strand, within PFLU_RS08865 at 1965.650 kb on + strand, within PFLU_RS08865 at 1965.650 kb on + strand, within PFLU_RS08865 at 1965.650 kb on + strand, within PFLU_RS08865 at 1965.651 kb on - strand, within PFLU_RS08865 at 1965.651 kb on - strand, within PFLU_RS08865 at 1965.696 kb on + strand, within PFLU_RS08865 at 1965.696 kb on + strand, within PFLU_RS08865 at 1965.696 kb on + strand, within PFLU_RS08865 at 1965.696 kb on + strand, within PFLU_RS08865 at 1965.696 kb on + strand, within PFLU_RS08865 at 1965.696 kb on + strand, within PFLU_RS08865 at 1965.697 kb on - strand, within PFLU_RS08865 at 1965.697 kb on - strand, within PFLU_RS08865 at 1965.697 kb on - strand, within PFLU_RS08865 at 1965.697 kb on - strand, within PFLU_RS08865 at 1965.697 kb on - strand, within PFLU_RS08865 at 1965.697 kb on - strand, within PFLU_RS08865 at 1965.697 kb on - strand, within PFLU_RS08865 at 1965.697 kb on - strand, within PFLU_RS08865 at 1965.697 kb on - strand, within PFLU_RS08865 at 1965.697 kb on - strand, within PFLU_RS08865 at 1965.697 kb on - strand, within PFLU_RS08865 at 1965.697 kb on - strand, within PFLU_RS08865 at 1965.932 kb on + strand, within PFLU_RS08865 at 1965.932 kb on + strand, within PFLU_RS08865 at 1965.932 kb on + strand, within PFLU_RS08865 at 1965.933 kb on - strand, within PFLU_RS08865 at 1965.933 kb on - strand, within PFLU_RS08865 at 1965.933 kb on - strand, within PFLU_RS08865 at 1966.032 kb on + strand at 1966.032 kb on + strand at 1966.032 kb on + strand at 1966.033 kb on - strand at 1966.033 kb on - strand at 1966.033 kb on - strand at 1966.044 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucose (C) and nitrate (N); with TAPS remove 1,963,509 + PFLU_RS08855 0.49 -1.2 1,963,614 + PFLU_RS08855 0.58 +0.4 1,963,614 + PFLU_RS08855 0.58 +1.7 1,963,614 + PFLU_RS08855 0.58 -1.6 1,963,614 + PFLU_RS08855 0.58 -0.4 1,963,614 + PFLU_RS08855 0.58 -0.0 1,963,614 + PFLU_RS08855 0.58 -0.7 1,963,614 + PFLU_RS08855 0.58 +1.2 1,963,614 + PFLU_RS08855 0.58 +0.7 1,963,614 + PFLU_RS08855 0.58 -0.0 1,963,615 - PFLU_RS08855 0.58 +0.8 1,963,615 - PFLU_RS08855 0.58 -0.6 1,963,615 - PFLU_RS08855 0.58 -1.2 1,963,615 - PFLU_RS08855 0.58 +0.2 1,963,615 - PFLU_RS08855 0.58 +1.3 1,963,615 - PFLU_RS08855 0.58 +1.0 1,963,620 + PFLU_RS08855 0.58 +0.4 1,963,620 + PFLU_RS08855 0.58 +0.5 1,963,620 + PFLU_RS08855 0.58 +0.2 1,963,620 + PFLU_RS08855 0.58 +1.2 1,963,620 + PFLU_RS08855 0.58 -0.1 1,963,620 + PFLU_RS08855 0.58 -0.5 1,963,620 + PFLU_RS08855 0.58 -0.1 1,963,620 + PFLU_RS08855 0.58 -0.7 1,963,620 + PFLU_RS08855 0.58 -0.7 1,963,620 + PFLU_RS08855 0.58 +0.7 1,963,620 + PFLU_RS08855 0.58 +1.4 1,963,620 + PFLU_RS08855 0.58 +0.4 1,963,621 - PFLU_RS08855 0.58 +1.6 1,963,621 - PFLU_RS08855 0.58 -0.4 1,963,621 - PFLU_RS08855 0.58 -0.0 1,963,621 - PFLU_RS08855 0.58 +0.2 1,963,621 - PFLU_RS08855 0.58 -1.0 1,963,621 - PFLU_RS08855 0.58 -0.3 1,963,621 - PFLU_RS08855 0.58 -0.8 1,963,621 - PFLU_RS08855 0.58 +1.7 1,963,621 - PFLU_RS08855 0.58 +1.4 1,964,070 + +0.1 1,964,071 - +0.7 1,964,155 + +0.7 1,964,156 - -0.3 1,964,156 - -0.4 1,964,156 - +0.1 1,964,181 + +1.4 1,964,182 - -0.9 1,964,182 - -0.0 1,964,184 + +0.4 1,964,184 + +0.8 1,964,184 + -0.0 1,964,185 - +0.4 1,964,185 - -0.4 1,964,185 - +0.5 1,964,185 - -1.2 1,964,185 - -1.8 1,964,185 - +0.2 1,964,215 + -0.6 1,964,215 + +0.7 1,964,215 + +0.2 1,964,215 + +0.4 1,964,215 + -0.8 1,964,216 - -0.8 1,964,216 - -2.3 1,964,216 - +0.6 1,964,216 - -1.0 1,964,219 + -0.6 1,964,220 - +0.4 1,964,220 - +2.2 1,964,243 + -1.4 1,964,243 + +1.0 1,964,243 + -0.5 1,964,243 + -1.4 1,964,244 - -1.5 1,964,244 - +1.3 1,964,405 + PFLU_RS08860 0.21 -1.2 1,964,406 - PFLU_RS08860 0.22 -1.1 1,964,758 + PFLU_RS08860 0.61 -0.2 1,964,758 + PFLU_RS08860 0.61 -0.8 1,964,758 + PFLU_RS08860 0.61 -1.0 1,965,002 + PFLU_RS08860 0.88 -0.6 1,965,099 - -0.5 1,965,122 + -1.4 1,965,122 + +0.5 1,965,122 + +1.6 1,965,123 - -0.8 1,965,123 - +0.1 1,965,123 - -0.5 1,965,123 - +0.8 1,965,123 - -0.0 1,965,123 - -0.8 1,965,123 - +1.0 1,965,125 + +1.1 1,965,125 + +3.3 1,965,125 + +2.2 1,965,125 + +0.0 1,965,126 - -0.0 1,965,126 - -1.0 1,965,126 - +1.0 1,965,126 - +0.4 1,965,126 - -0.8 1,965,126 - +1.3 1,965,179 + +0.7 1,965,187 + +0.2 1,965,187 + +0.1 1,965,187 + +0.6 1,965,188 - -2.4 1,965,188 - +0.6 1,965,251 + -1.0 1,965,251 + +1.4 1,965,251 + -0.6 1,965,251 + -1.0 1,965,251 + -0.6 1,965,252 - -0.8 1,965,252 - -1.0 1,965,252 - +0.7 1,965,262 - -1.2 1,965,311 + -2.3 1,965,311 + -0.0 1,965,312 - -0.1 1,965,312 - -1.2 1,965,312 - -0.4 1,965,371 + PFLU_RS08865 0.15 -1.4 1,965,371 + PFLU_RS08865 0.15 +1.0 1,965,371 + PFLU_RS08865 0.15 -2.0 1,965,372 - PFLU_RS08865 0.16 -0.6 1,965,494 + PFLU_RS08865 0.31 +0.4 1,965,494 + PFLU_RS08865 0.31 +0.4 1,965,494 + PFLU_RS08865 0.31 -0.4 1,965,494 + PFLU_RS08865 0.31 +0.1 1,965,494 + PFLU_RS08865 0.31 -2.3 1,965,494 + PFLU_RS08865 0.31 +0.6 1,965,494 + PFLU_RS08865 0.31 +0.2 1,965,494 + PFLU_RS08865 0.31 -0.3 1,965,494 + PFLU_RS08865 0.31 -0.5 1,965,494 + PFLU_RS08865 0.31 -0.8 1,965,494 + PFLU_RS08865 0.31 -1.4 1,965,494 + PFLU_RS08865 0.31 +0.3 1,965,494 + PFLU_RS08865 0.31 +0.2 1,965,494 + PFLU_RS08865 0.31 +0.4 1,965,494 + PFLU_RS08865 0.31 -0.4 1,965,494 + PFLU_RS08865 0.31 +0.4 1,965,494 + PFLU_RS08865 0.31 +0.4 1,965,494 + PFLU_RS08865 0.31 +0.4 1,965,494 + PFLU_RS08865 0.31 -0.5 1,965,494 + PFLU_RS08865 0.31 -0.0 1,965,494 + PFLU_RS08865 0.31 +1.6 1,965,494 + PFLU_RS08865 0.31 -0.5 1,965,494 + PFLU_RS08865 0.31 -0.5 1,965,494 + PFLU_RS08865 0.31 +0.5 1,965,495 - PFLU_RS08865 0.31 +0.6 1,965,495 - PFLU_RS08865 0.31 -0.8 1,965,495 - PFLU_RS08865 0.31 +1.0 1,965,495 - PFLU_RS08865 0.31 +1.2 1,965,495 - PFLU_RS08865 0.31 +1.0 1,965,495 - PFLU_RS08865 0.31 -0.8 1,965,495 - PFLU_RS08865 0.31 -1.2 1,965,495 - PFLU_RS08865 0.31 -0.3 1,965,495 - PFLU_RS08865 0.31 +1.2 1,965,495 - PFLU_RS08865 0.31 +2.3 1,965,495 - PFLU_RS08865 0.31 +0.2 1,965,503 + PFLU_RS08865 0.32 -0.1 1,965,504 - PFLU_RS08865 0.32 +0.9 1,965,504 - PFLU_RS08865 0.32 -1.0 1,965,504 - PFLU_RS08865 0.32 -1.6 1,965,572 + PFLU_RS08865 0.41 -1.1 1,965,572 + PFLU_RS08865 0.41 +0.4 1,965,573 - PFLU_RS08865 0.41 +1.1 1,965,573 - PFLU_RS08865 0.41 -0.3 1,965,573 - PFLU_RS08865 0.41 -0.4 1,965,573 - PFLU_RS08865 0.41 -0.4 1,965,573 - PFLU_RS08865 0.41 -1.2 1,965,650 + PFLU_RS08865 0.51 +0.1 1,965,650 + PFLU_RS08865 0.51 +1.0 1,965,650 + PFLU_RS08865 0.51 -0.8 1,965,650 + PFLU_RS08865 0.51 +1.3 1,965,651 - PFLU_RS08865 0.51 +2.0 1,965,651 - PFLU_RS08865 0.51 +0.5 1,965,696 + PFLU_RS08865 0.57 -0.0 1,965,696 + PFLU_RS08865 0.57 -0.2 1,965,696 + PFLU_RS08865 0.57 +0.0 1,965,696 + PFLU_RS08865 0.57 +0.6 1,965,696 + PFLU_RS08865 0.57 -0.6 1,965,696 + PFLU_RS08865 0.57 -0.4 1,965,697 - PFLU_RS08865 0.57 -0.6 1,965,697 - PFLU_RS08865 0.57 -0.1 1,965,697 - PFLU_RS08865 0.57 +0.2 1,965,697 - PFLU_RS08865 0.57 +0.2 1,965,697 - PFLU_RS08865 0.57 -0.5 1,965,697 - PFLU_RS08865 0.57 +1.3 1,965,697 - PFLU_RS08865 0.57 -0.7 1,965,697 - PFLU_RS08865 0.57 +0.4 1,965,697 - PFLU_RS08865 0.57 +1.2 1,965,697 - PFLU_RS08865 0.57 +0.3 1,965,697 - PFLU_RS08865 0.57 +0.2 1,965,697 - PFLU_RS08865 0.57 +3.0 1,965,932 + PFLU_RS08865 0.87 -0.8 1,965,932 + PFLU_RS08865 0.87 +0.3 1,965,932 + PFLU_RS08865 0.87 +0.2 1,965,933 - PFLU_RS08865 0.87 +2.6 1,965,933 - PFLU_RS08865 0.87 -0.0 1,965,933 - PFLU_RS08865 0.87 +1.3 1,966,032 + -1.8 1,966,032 + -0.2 1,966,032 + +0.4 1,966,033 - +1.6 1,966,033 - +1.3 1,966,033 - -1.8 1,966,044 + +0.1
Or see this region's nucleotide sequence