Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22690 and HSERO_RS22695 are separated by 100 nucleotides HSERO_RS22695 and HSERO_RS22700 are separated by 259 nucleotides
HSERO_RS22690: HSERO_RS22690 - C4-dicarboxylate ABC transporter, at 5,203,961 to 5,205,295
_RS22690
HSERO_RS22695: HSERO_RS22695 - GntR family transcriptional regulator, at 5,205,396 to 5,206,082
_RS22695
HSERO_RS22700: HSERO_RS22700 - methyl-accepting chemotaxis protein, at 5,206,342 to 5,208,138
_RS22700
Position (kb) 5205
5206
5207 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 5204.441 kb on + strand, within HSERO_RS22690 at 5204.563 kb on - strand, within HSERO_RS22690 at 5204.990 kb on - strand, within HSERO_RS22690 at 5204.991 kb on - strand, within HSERO_RS22690 at 5204.998 kb on - strand, within HSERO_RS22690 at 5205.121 kb on + strand, within HSERO_RS22690 at 5205.284 kb on + strand at 5205.286 kb on + strand at 5205.617 kb on + strand, within HSERO_RS22695 at 5205.680 kb on - strand, within HSERO_RS22695 at 5205.835 kb on - strand, within HSERO_RS22695 at 5205.979 kb on + strand, within HSERO_RS22695 at 5205.979 kb on + strand, within HSERO_RS22695 at 5205.979 kb on + strand, within HSERO_RS22695 at 5206.042 kb on - strand at 5206.073 kb on + strand at 5206.104 kb on + strand at 5206.196 kb on + strand at 5206.266 kb on + strand at 5206.318 kb on + strand at 5206.325 kb on + strand at 5206.325 kb on + strand at 5206.477 kb on - strand at 5206.550 kb on + strand, within HSERO_RS22700 at 5206.619 kb on + strand, within HSERO_RS22700 at 5206.749 kb on + strand, within HSERO_RS22700 at 5206.785 kb on + strand, within HSERO_RS22700 at 5207.067 kb on + strand, within HSERO_RS22700 at 5207.067 kb on + strand, within HSERO_RS22700 at 5207.075 kb on - strand, within HSERO_RS22700 at 5207.075 kb on - strand, within HSERO_RS22700
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 5,204,441 + HSERO_RS22690 0.36 -0.6 5,204,563 - HSERO_RS22690 0.45 -0.1 5,204,990 - HSERO_RS22690 0.77 -0.4 5,204,991 - HSERO_RS22690 0.77 +0.6 5,204,998 - HSERO_RS22690 0.78 +4.2 5,205,121 + HSERO_RS22690 0.87 -0.0 5,205,284 + -0.3 5,205,286 + +0.4 5,205,617 + HSERO_RS22695 0.32 +0.1 5,205,680 - HSERO_RS22695 0.41 +1.7 5,205,835 - HSERO_RS22695 0.64 -1.5 5,205,979 + HSERO_RS22695 0.85 +0.2 5,205,979 + HSERO_RS22695 0.85 -1.2 5,205,979 + HSERO_RS22695 0.85 +0.7 5,206,042 - +0.5 5,206,073 + +0.0 5,206,104 + +0.7 5,206,196 + -0.0 5,206,266 + +0.0 5,206,318 + +0.7 5,206,325 + +0.2 5,206,325 + +0.6 5,206,477 - +2.4 5,206,550 + HSERO_RS22700 0.12 -0.2 5,206,619 + HSERO_RS22700 0.15 +0.4 5,206,749 + HSERO_RS22700 0.23 +0.4 5,206,785 + HSERO_RS22700 0.25 -0.6 5,207,067 + HSERO_RS22700 0.40 +0.1 5,207,067 + HSERO_RS22700 0.40 +1.5 5,207,075 - HSERO_RS22700 0.41 -0.2 5,207,075 - HSERO_RS22700 0.41 -0.8
Or see this region's nucleotide sequence